Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001759

Physical Location & Seq

Genomic Coordinates Forward (+)

30489608 .. 30495358

Gene Structure 5751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1164400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCTGATATTGTCCTCCAACAACATAATGTGTAGGTCTATTCTTGGGCAAAAGTTTGACGATGAAGATGGTAGTTGGTTCGGAGAGGTGGCGGTGGAGTTGATGCTGCAAGTAATGAGCTTCAGCTTCGGAGATCTTTTCCCTGCTTCGAGATGGATTGACCATCTTAGAGGCTTCATTGCGCGTTTGAAGGCAAGTTTTTCCCGATTTGATACGTTTTATGATCAGTTGATTGATGAACACAAGACAGCGAATAGAGAAGGTAAGACTAGTAAGAAGGATTTTGTGGATATTATACTCCAAGTTCAAAACGACGGTGCACTTGATTTTGAGTTCATTAAAGAGGACCTCAGAGTATTCCTACAGGACATGTTTGTGGGGGGAAGTGATGCTAGTTCAACTGCGATGGTATGGCTAATGGCGGAGCTTGTGAGAAATCCAAGAGTGATGAAGAAAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00980 ko01100 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00980 map01100 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

154

Amino Acids

17.58

Weight (kDa)

5.02

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	7 - 153	9e-17	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001759)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g17450 FvH4_5g06440 FvH4_5g06460
malus_domestica	MD00G1167000.v1.1 MD06G1164400.v1.1 MD06G1164700.v1.1 MD14G1169200.v1.1 MD14G1169600.v1.1 MD14G1169700.v1.1
prunus_persica	Prupe.3G184200_v2.0.a1 Prupe.5G163700_v2.0.a1 Prupe.5G163800_v2.0.a1 Prupe.5G164000_v2.0.a1 Prupe.5G164100_v2.0.a1
pyrus_communis	pycom06g14730 pycom14g14150
rosa_chinensis	RchiOBHm_Chr1g0314001 RchiOBHm_Chr4g0420441 RchiOBHm_Chr5g0028981 RchiOBHm_Chr7g0192271 RchiOBHm_Chr7g0192301 RchiOBHm_Chr7g0233491
rosa_laevigata	RLG00000004378 RLG00000004380 RLG00000007763 RLG00000033133
rosa_multiflora	Rmu_sc0001559.1_g000001 Rmu_sc0009042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00050910 Rroxscaffold_3G00263130
rosa_rugosa	Rorug03G0295500 Rorug05G0112200 Rorug07G0000300 Rorug07G0000400
rosa_samantha	Rh4AG225500 Rh5AG204200 Rh5CG223300 Rh7AG124500 Rh7AG124700 Rh7BG126300 Rh7BG126500 Rh7DG128100 Rh7DG128300
rosa_wichuraiana	Rw0G008520 Rw4G011870 Rw5G018510 Rw7G010670 Rw7G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	184
AciI	CCGC	2 cut(s)	92, 422
AcuI	CTGAAG	1 cut(s)	106
AflIII	ACRYGT	1 cut(s)	369
AgsI	TTSAA	3 cut(s)	190, 308, 399
AhlI	ACTAGT	1 cut(s)	269
AluBI	AGCT	3 cut(s)	120, 126, 427
AluI	AGCT	3 cut(s)	120, 126, 427
Alw21I	GWGCWC	1 cut(s)	322
Alw44I	GTGCAC	1 cut(s)	318
ApaLI	GTGCAC	1 cut(s)	318
ApeKI	GCWGC	1 cut(s)	106
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	346
BaeGI	GKGCMC	1 cut(s)	322
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	1 cut(s)	93
BccI	CCATC	4 cut(s)	62, 147, 171, 400
BclI	TGATCA	1 cut(s)	223
BcuI	ACTAGT	1 cut(s)	269
BfaI	CTAG	2 cut(s)	270, 393
BfmI	CTRYAG	1 cut(s)	362
BglII	AGATCT	1 cut(s)	133
BisI	GCNGC	1 cut(s)	107
BlsI	GCNGC	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	346
BmsI	GCATC	2 cut(s)	93, 379
Bse3DI	GCAATG	1 cut(s)	177
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	364
BseSI	GKGCMC	1 cut(s)	322
BseXI	GCAGC	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	2 cut(s)	133, 223
BspACI	CCGC	2 cut(s)	92, 422
BspCNI	CTCAG	1 cut(s)	363
BspFNI	CGCG	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	177
BssMI	GATC	2 cut(s)	133, 223
Bst4CI	ACNGT	1 cut(s)	317
BstDEI	CTNAG	2 cut(s)	167, 350
BstFNI	CGCG	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	2 cut(s)	136, 226
BstMBI	GATC	2 cut(s)	133, 223
BstNSI	RCATGY	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	362
BstSLI	GKGCMC	1 cut(s)	322
BstUI	CGCG	1 cut(s)	184
BstV1I	GCAGC	1 cut(s)	93
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BtgZI	GCGATG	1 cut(s)	419
CfoI	GCGC	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	346
CviAII	CATG	1 cut(s)	370
CviJI	RGCY	5 cut(s)	120, 126, 174, 415, 427
CviKI_1	RGCY	5 cut(s)	120, 126, 174, 415, 427
DdeI	CTNAG	2 cut(s)	167, 350
DpnI	GATC	2 cut(s)	135, 225
DpnII	GATC	2 cut(s)	133, 223
EciI	GGCGGA	1 cut(s)	437
Eco47I	GGWCC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	106
EcoO109I	RGGNCCY	1 cut(s)	346
FaeI	CATG	1 cut(s)	373
FaiI	YATR	5 cut(s)	26, 222, 296, 371, 412
FatI	CATG	1 cut(s)	369
FbaI	TGATCA	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	107
FspBI	CTAG	2 cut(s)	270, 393
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	1 cut(s)	373
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	3 cut(s)	83, 131, 353
Hpy188III	TCNNGA	2 cut(s)	150, 204
Hpy8I	GTNNAC	1 cut(s)	320
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	3 cut(s)	184, 254, 271
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	2 cut(s)	109, 320
HpyF3I	CTNAG	2 cut(s)	167, 350
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	1 cut(s)	373
HspAI	GCGC	1 cut(s)	182
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	133, 223
LmnI	GCTCC	1 cut(s)	424
LpnPI	CCDG	2 cut(s)	156, 350
Lsp1109I	GCAGC	1 cut(s)	93
LweI	GCATC	2 cut(s)	93, 379
MaeI	CTAG	2 cut(s)	270, 393
MaeII	ACGT	1 cut(s)	215
MalI	GATC	2 cut(s)	135, 225
MboI	GATC	2 cut(s)	133, 223
MboII	GAAGA	1 cut(s)	77
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	322
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	5 cut(s)	25, 79, 164, 337, 359
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	374
MvnI	CGCG	1 cut(s)	184
NdeII	GATC	2 cut(s)	133, 223
NlaIII	CATG	1 cut(s)	373
NspI	RCATGY	1 cut(s)	373
PciI	ACATGT	1 cut(s)	369
PkrI	GCNGC	1 cut(s)	108
PpuMI	RGGWCCY	1 cut(s)	346
PscI	ACATGT	1 cut(s)	369
Psp5II	RGGWCCY	1 cut(s)	346
PspPI	GGNCC	1 cut(s)	346
PspPPI	RGGWCCY	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	374
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	1 cut(s)	107
Sau3AI	GATC	2 cut(s)	133, 223
Sau96I	GGNCC	1 cut(s)	346
SduI	GDGCHC	1 cut(s)	322
SetI	ASST	8 cut(s)	38, 90, 122, 128, 218, 265, 351, 429
SfaNI	GCATC	2 cut(s)	93, 379
SfcI	CTRYAG	1 cut(s)	362
SinI	GGWCC	1 cut(s)	346
SmiMI	CAYNNNNRTG	1 cut(s)	374
SpeI	ACTAGT	1 cut(s)	269
SsiI	CCGC	2 cut(s)	92, 422
SspMI	CTAG	2 cut(s)	270, 393
TaaI	ACNGT	1 cut(s)	317
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TseI	GCWGC	1 cut(s)	106
TspDTI	ATGAA	4 cut(s)	78, 166, 252, 325
VneI	GTGCAC	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	346
XceI	RCATGY	1 cut(s)	373
XspI	CTAG	2 cut(s)	270, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.