Rw5G018510

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
23897774 .. 23899469
1696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G018510.1

Sequence Viewer

Length: 1545 bp
ATGGCTCTATTACCATGTTTGAATCAACTGGGGCAAGAGCTACAAAGGATCACCACTCCCTTCAATCTTTTCTTGGTTTCTCTCCTCTCACTTTCCATATTCATTTTGTTTTCATTTTCCGGATCAGGTTCGAAACTCAAGTTACCGCCATCTCCAACAAGGTTACCACTAATTGGAAACCTCCACCAGCTAGGCACACTCCCACACCGCTCTCTTGGCAATCTGTCTAATAAGTATGGCCCTCTAATGCTACTTCACTTGGGCCTAGTTCCAACACTAGTAGTTTCATCAGCAGAAATGGCCAAGGAAGTCATGAAGACCCATGATACTGTTTTCTCCAGCCGTCCCAAAACTACAGCTGCAAACATATTAGTCTATGGATGCCACGACATCGGCTTTGCTCCTTATGGGGAGTACTGGAGACAAGTTCGGAAACTTTGTGTTCTTGAACTTCTCAGCCTCAAAAGGGTGCAACAATTTCAGTATGCAAGAGAAGAAGAAATTGGGGAGTTGGTAAACAGGATAGGAAAAGCGTGCCTCGGCAAGTCTCCTATTAATCTAAGTGAGATGCTGATAAAAGCCTCCAACAACATAATGTCTAGGTGCGTTCTTGGACAGAATTTTATAGAAGAAAATGGAAATTGGTTTGGAGAGTTGTCAAGAACGCTGATGGCTCAACTAATGGTTTTCAGCTTCGGAGATTTCTTCCCTTCTTTGAGATGGATTGACAGTCTTAGAGGACTAACTGCGCGGTTGAATAAAACCTTTGTCGAAGTAGATGGATTCCTTGATCAGTTAATTGAAAAGCATAAGACAGCAAATGGAGAAGTTGATTCCAAGGACTTTGTGGATATTCTCCTCCAGCTTCAAAAGGATAGCATCCTTGACTTCGAGCTTACTCGAGACAACCTGAAAGCCATCCTAGTGGACATGCTCATTGGGGGAAGTGATACTAGTTCAACCGCGTTGGAATGGTTAATGGCAGAGCTGGTGAGAAATCCAAACGTAATGGCCAAAGTCCAAGAAGAAGTTAGGCGGGTGGTGGGAAAAAAGGCAAGGGTGGATGTGAGTGATATCGAACAAATGGACTACCTAAAATGTGTCATCAAAGAAGCTCTAAGGCTACATCCTCCAGCTCCTCTTTTAATTCCTAGAGAAACAATTGCAGGTGTGGAATTGGGAGGTTACTATATCCCTGCGAAAACAAGAGTGTTTGTGAATGCATTTGCAATCCAAAGGGACCCTGAATTCTGGGACAGACCAGAGGAGTTCCTTCCGGAACGATTTGAGGGCAACTCAGTTGATTTCAGAGGCCAGGACTTCCAGTTCATCGCATTTGGTGGTGGGAGAAGGGGGTGTCCTGGAGTGACCTTTGCGGTTGCTGCAGCTGAATACGAGCTTGCAAACCTTCTTTATTGGTTTGATTGGAAATTGCCTAGTTGTGGTAGTGCATTGGCCGAGACCTTGGACATGACTGAAGTTTACGGTCTCACTGTCCATAAAAAAGCTCCTCTTCATGTCGTGCCATTATTGTACTCCCCTTGA

Protein Analysis

514

Amino Acids

57.68

Weight (kDa)

6.35

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 49 - 480 2.4e-100 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1157
Acc36I ACCTGC 1 cut(s) 1157
AccB7I CCANNNNNTGG 1 cut(s) 173
AccBSI CCGCTC 1 cut(s) 210
AccII CGCG 2 cut(s) 751, 965
AccIII TCCGGA 2 cut(s) 119, 1276
AciI CCGC 6 cut(s) 146, 208, 751, 963, 1036, 1376
AclWI GGATC 2 cut(s) 56, 130
AcoI YGGCCR 3 cut(s) 300, 1011, 1455
AcsI RAATTY 2 cut(s) 619, 1247
AcuI CTGAAG 1 cut(s) 1497
AfaI GTAC 2 cut(s) 416, 1535
AfiI CCNNNNNNNGG 3 cut(s) 173, 466, 1442
AgsI TTSAA 7 cut(s) 22, 64, 449, 757, 803, 869, 960
AhlI ACTAGT 2 cut(s) 277, 953
AjnI CCWGG 2 cut(s) 1314, 1360
AjuI GAANNNNNNNTTGG 2 cut(s) 486, 518
AloI GAACNNNNNNTCC 2 cut(s) 1310, 1342
Alw26I GTCTC 5 cut(s) 415, 552, 897, 1454, 1493
AlwI GGATC 2 cut(s) 56, 130
Ama87I CYCGRG 1 cut(s) 900
Aor13HI TCCGGA 2 cut(s) 119, 1276
AoxI GGCC 6 cut(s) 238, 262, 300, 1011, 1312, 1455
ApeKI GCWGC 3 cut(s) 359, 1382, 1385
ApoI RAATTY 2 cut(s) 619, 1247
ArsI GACNNNNNNTTYG 2 cut(s) 380, 412
AseI ATTAAT 1 cut(s) 555
AspLEI GCGC 1 cut(s) 751
AspS9I GGNCC 3 cut(s) 239, 262, 1240
AsuHPI GGTGA 2 cut(s) 43, 1003
AsuII TTCGAA 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 900
AvaII GGWCC 1 cut(s) 1240
BalI TGGCCA 2 cut(s) 302, 1013
BbsI GAAGAC 1 cut(s) 323
BbvI GCAGC 3 cut(s) 346, 1369, 1397
BccI CCATC 5 cut(s) 157, 664, 714, 773, 926
BceAI ACGGC 1 cut(s) 327
BciT130I CCWGG 2 cut(s) 1316, 1362
BclI TGATCA 1 cut(s) 790
BcoDI GTCTC 5 cut(s) 415, 552, 897, 1454, 1493
BcuI ACTAGT 2 cut(s) 277, 953
BfaI CTAG 8 cut(s) 191, 266, 278, 600, 923, 954, 1152, 1437
BfmI CTRYAG 2 cut(s) 354, 1383
BfuAI ACCTGC 1 cut(s) 1157
BisI GCNGC 3 cut(s) 360, 1383, 1386
BlsI GCNGC 3 cut(s) 361, 1384, 1387
BmcAI AGTACT 1 cut(s) 416
Bme1390I CCNGG 2 cut(s) 1316, 1362
Bme18I GGWCC 1 cut(s) 1240
BmeT110I CYCGRG 1 cut(s) 900
BmgT120I GGNCC 3 cut(s) 239, 262, 1240
BmiI GGNNCC 2 cut(s) 1241, 1242
BmrFI CCNGG 2 cut(s) 1316, 1362
BmrI ACTGGG 1 cut(s) 38
BmsI GCATC 3 cut(s) 371, 558, 888
BmuI ACTGGG 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 323
BplI GAGNNNNNCTC 2 cut(s) 1280, 1312
BpmI CTGGAG 5 cut(s) 322, 439, 845, 1116, 1383
Bpu14I TTCGAA 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 122
BsaI GGTCTC 2 cut(s) 1454, 1493
BsaJI CCNNGG 4 cut(s) 303, 538, 837, 1464
BsaWI WCCGGW 2 cut(s) 119, 1276
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 466, 1442
Bse1I ACTGG 3 cut(s) 33, 422, 1324
BseAI TCCGGA 2 cut(s) 119, 1276
BseBI CCWGG 2 cut(s) 1316, 1362
BseDI CCNNGG 4 cut(s) 303, 538, 837, 1464
BseGI GGATG 5 cut(s) 386, 879, 918, 1069, 1126
BseLI CCNNNNNNNGG 3 cut(s) 173, 466, 1442
BseMII CTCAG 2 cut(s) 469, 1311
BseNI ACTGG 3 cut(s) 33, 422, 1324
BseRI GAGGAG 5 cut(s) 74, 848, 1128, 1280, 1500
BseXI GCAGC 3 cut(s) 346, 1369, 1397
Bsh1236I CGCG 2 cut(s) 751, 965
BshFI GGCC 6 cut(s) 240, 264, 302, 1013, 1314, 1457
BsiHKCI CYCGRG 1 cut(s) 900
BsiSI CCGG 2 cut(s) 120, 1277
BslFI GGGAC 3 cut(s) 330, 1253, 1268
BslI CCNNNNNNNGG 3 cut(s) 173, 466, 1442
BsmAI GTCTC 5 cut(s) 415, 552, 897, 1454, 1493
BsmFI GGGAC 3 cut(s) 330, 1253, 1268
BsmI GAATGC 1 cut(s) 1225
BsnI GGCC 6 cut(s) 240, 264, 302, 1013, 1314, 1457
Bso31I GGTCTC 2 cut(s) 1454, 1493
BsoBI CYCGRG 1 cut(s) 900
Bsp119I TTCGAA 1 cut(s) 131
Bsp13I TCCGGA 2 cut(s) 119, 1276
Bsp143I GATC 3 cut(s) 48, 122, 790
BspACI CCGC 6 cut(s) 146, 208, 751, 963, 1036, 1376
BspANI GGCC 6 cut(s) 240, 264, 302, 1013, 1314, 1457
BspCNI CTCAG 2 cut(s) 468, 1310
BspEI TCCGGA 2 cut(s) 119, 1276
BspFNI CGCG 2 cut(s) 751, 965
BspHI TCATGA 1 cut(s) 312
BspLI GGNNCC 2 cut(s) 1241, 1242
BspMAI CTGCAG 1 cut(s) 1387
BspMI ACCTGC 1 cut(s) 1157
BspPI GGATC 2 cut(s) 56, 130
BspT104I TTCGAA 1 cut(s) 131
BspTNI GGTCTC 2 cut(s) 1454, 1493
BsrBI CCGCTC 1 cut(s) 210
BsrI ACTGG 3 cut(s) 33, 422, 1324
BssECI CCNNGG 4 cut(s) 303, 538, 837, 1464
BssMI GATC 3 cut(s) 48, 122, 790
BssT1I CCWWGG 3 cut(s) 303, 837, 1464
Bst2UI CCWGG 2 cut(s) 1316, 1362
Bst4CI ACNGT 4 cut(s) 331, 731, 1487, 1495
Bst6I CTCTTC 1 cut(s) 1518
BstBI TTCGAA 1 cut(s) 131
BstC8I GCNNGC 2 cut(s) 535, 1401
BstDEI CTNAG 5 cut(s) 455, 560, 734, 1118, 1297
BstEII GGTNACC 1 cut(s) 162
BstF5I GGATG 5 cut(s) 386, 879, 918, 1069, 1126
BstFNI CGCG 2 cut(s) 751, 965
BstHHI GCGC 1 cut(s) 751
BstKTI GATC 3 cut(s) 51, 125, 793
BstMAI GTCTC 5 cut(s) 415, 552, 897, 1454, 1493
BstMBI GATC 3 cut(s) 48, 122, 790
BstMWI GCNNNNNNNGC 3 cut(s) 216, 299, 1382
BstNI CCWGG 2 cut(s) 1316, 1362
BstNSI RCATGY 1 cut(s) 934
BstPI GGTNACC 1 cut(s) 162
BstSCI CCNGG 2 cut(s) 1314, 1360
BstSFI CTRYAG 2 cut(s) 354, 1383
BstUI CGCG 2 cut(s) 751, 965
BstV1I GCAGC 3 cut(s) 346, 1369, 1397
BstV2I GAAGAC 1 cut(s) 323
BstXI CCANNNNNNTGG 1 cut(s) 925
BsuRI GGCC 6 cut(s) 240, 264, 302, 1013, 1314, 1457
BtgZI GCGATG 1 cut(s) 1315
BtsCI GGATG 5 cut(s) 386, 879, 918, 1069, 1126
BtsIMutI CAGTG 1 cut(s) 1491
BveI ACCTGC 1 cut(s) 1157
Cac8I GCNNGC 2 cut(s) 535, 1401
CciI TCATGA 1 cut(s) 312
CfoI GCGC 1 cut(s) 751
Cfr13I GGNCC 3 cut(s) 239, 262, 1240
Csp6I GTAC 2 cut(s) 415, 1534
CviAII CATG 6 cut(s) 15, 313, 323, 931, 1471, 1517
CviQI GTAC 2 cut(s) 415, 1534
DdeI CTNAG 5 cut(s) 455, 560, 734, 1118, 1297
DpnI GATC 3 cut(s) 50, 124, 792
DpnII GATC 3 cut(s) 48, 122, 790
EaeI YGGCCR 3 cut(s) 300, 1011, 1455
Eam1104I CTCTTC 1 cut(s) 1518
EarI CTCTTC 1 cut(s) 1518
Eco130I CCWWGG 3 cut(s) 303, 837, 1464
Eco31I GGTCTC 2 cut(s) 1454, 1493
Eco32I GATATC 1 cut(s) 1075
Eco47I GGWCC 1 cut(s) 1240
Eco57I CTGAAG 1 cut(s) 1497
Eco88I CYCGRG 1 cut(s) 900
Eco91I GGTNACC 1 cut(s) 162
EcoO109I RGGNCCY 1 cut(s) 1240
EcoO65I GGTNACC 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 1247
EcoRII CCWGG 2 cut(s) 1314, 1360
EcoRV GATATC 1 cut(s) 1075
EcoT14I CCWWGG 3 cut(s) 303, 837, 1464
EcoT22I ATGCAT 1 cut(s) 1225
ErhI CCWWGG 3 cut(s) 303, 837, 1464
FaeI CATG 6 cut(s) 18, 316, 326, 934, 1474, 1520
FalI AAGNNNNNCTT 2 cut(s) 1497, 1529
FaqI GGGAC 3 cut(s) 330, 1253, 1268
FatI CATG 6 cut(s) 14, 312, 322, 930, 1470, 1516
FauI CCCGC 1 cut(s) 1029
FbaI TGATCA 1 cut(s) 790
Fnu4HI GCNGC 3 cut(s) 360, 1383, 1386
FokI GGATG 5 cut(s) 393, 866, 905, 1076, 1113
Fsp4HI GCNGC 3 cut(s) 360, 1383, 1386
FspBI CTAG 8 cut(s) 191, 266, 278, 600, 923, 954, 1152, 1437
GlaI GCGC 1 cut(s) 750
GluI GCNGC 3 cut(s) 360, 1383, 1386
GsuI CTGGAG 5 cut(s) 322, 439, 845, 1116, 1383
HaeIII GGCC 6 cut(s) 240, 264, 302, 1013, 1314, 1457
HapII CCGG 2 cut(s) 120, 1277
HhaI GCGC 1 cut(s) 751
Hin1II CATG 6 cut(s) 18, 316, 326, 934, 1474, 1520
Hin6I GCGC 1 cut(s) 749
HinP1I GCGC 1 cut(s) 749
HinfI GANTC 3 cut(s) 22, 783, 833
HpaII CCGG 2 cut(s) 120, 1277
HphI GGTGA 2 cut(s) 43, 1003
Hpy166II GTNNAC 3 cut(s) 517, 928, 1483
Hpy188I TCNGA 3 cut(s) 432, 698, 1310
Hpy188III TCNNGA 6 cut(s) 120, 313, 446, 660, 902, 1277
Hpy8I GTNNAC 3 cut(s) 517, 928, 1483
HpyAV CCTTC 5 cut(s) 70, 720, 1283, 1344, 1418
HpyCH4III ACNGT 4 cut(s) 331, 731, 1487, 1495
HpyCH4IV ACGT 1 cut(s) 1005
HpyCH4V TGCA 9 cut(s) 362, 472, 488, 1166, 1223, 1229, 1385, 1403, 1451
HpyF10VI GCNNNNNNNGC 3 cut(s) 216, 299, 1382
HpyF3I CTNAG 5 cut(s) 455, 560, 734, 1118, 1297
HpySE526I ACGT 1 cut(s) 1005
Hsp92II CATG 6 cut(s) 18, 316, 326, 934, 1474, 1520
HspAI GCGC 1 cut(s) 749
KflI GGGWCCC 1 cut(s) 1240
Kpn2I TCCGGA 2 cut(s) 119, 1276
Ksp22I TGATCA 1 cut(s) 790
Kzo9I GATC 3 cut(s) 48, 122, 790
LmnI GCTCC 3 cut(s) 406, 1141, 1513
Lsp1109I GCAGC 3 cut(s) 346, 1369, 1397
LweI GCATC 3 cut(s) 371, 558, 888
MaeI CTAG 8 cut(s) 191, 266, 278, 600, 923, 954, 1152, 1437
MaeII ACGT 1 cut(s) 1005
MaeIII GTNAC 4 cut(s) 141, 162, 1184, 1366
MalI GATC 3 cut(s) 50, 124, 792
MbiI CCGCTC 1 cut(s) 210
MboI GATC 3 cut(s) 48, 122, 790
MboII GAAGA 7 cut(s) 328, 506, 509, 641, 697, 1037, 1505
MfeI CAATTG 1 cut(s) 1161
MlsI TGGCCA 2 cut(s) 302, 1013
MluNI TGGCCA 2 cut(s) 302, 1013
MmeI TCCRAC 4 cut(s) 179, 296, 609, 948
Mox20I TGGCCA 2 cut(s) 302, 1013
Mph1103I ATGCAT 1 cut(s) 1225
MroI TCCGGA 2 cut(s) 119, 1276
MscI TGGCCA 2 cut(s) 302, 1013
MseI TTAA 4 cut(s) 555, 797, 977, 1145
MslI CAYNNNNRTG 1 cut(s) 923
Msp20I TGGCCA 2 cut(s) 302, 1013
MspA1I CMGCKG 2 cut(s) 359, 1388
MspI CCGG 2 cut(s) 120, 1277
MspR9I CCNGG 2 cut(s) 1316, 1362
MunI CAATTG 1 cut(s) 1161
Mva1269I GAATGC 1 cut(s) 1225
MvaI CCWGG 2 cut(s) 1316, 1362
MvnI CGCG 2 cut(s) 751, 965
MwoI GCNNNNNNNGC 3 cut(s) 216, 299, 1382
NdeII GATC 3 cut(s) 48, 122, 790
NlaIII CATG 6 cut(s) 18, 316, 326, 934, 1474, 1520
NlaIV GGNNCC 2 cut(s) 1241, 1242
NmeAIII GCCGAG 2 cut(s) 519, 1483
NmuCI GTSAC 1 cut(s) 1366
NsiI ATGCAT 1 cut(s) 1225
NspI RCATGY 1 cut(s) 934
NspV TTCGAA 1 cut(s) 131
PaeR7I CTCGAG 1 cut(s) 900
PagI TCATGA 1 cut(s) 312
PaqCI CACCTGC 1 cut(s) 1157
PctI GAATGC 1 cut(s) 1225
PfeI GAWTC 3 cut(s) 22, 783, 833
PflMI CCANNNNNTGG 1 cut(s) 173
PfoI TCCNGGA 1 cut(s) 1360
PkrI GCNGC 3 cut(s) 361, 1384, 1387
PpuMI RGGWCCY 1 cut(s) 1240
PshBI ATTAAT 1 cut(s) 555
Psp5II RGGWCCY 1 cut(s) 1240
Psp6I CCWGG 2 cut(s) 1314, 1360
PspEI GGTNACC 1 cut(s) 162
PspGI CCWGG 2 cut(s) 1314, 1360
PspN4I GGNNCC 2 cut(s) 1241, 1242
PspPI GGNCC 3 cut(s) 239, 262, 1240
PspPPI RGGWCCY 1 cut(s) 1240
PstI CTGCAG 1 cut(s) 1387
PvuII CAGCTG 2 cut(s) 359, 1388
RsaI GTAC 2 cut(s) 416, 1535
RsaNI GTAC 2 cut(s) 415, 1534
RseI CAYNNNNRTG 1 cut(s) 923
SaqAI TTAA 4 cut(s) 555, 797, 977, 1145
SatI GCNGC 3 cut(s) 360, 1383, 1386
Sau3AI GATC 3 cut(s) 48, 122, 790
Sau96I GGNCC 3 cut(s) 239, 262, 1240
ScaI AGTACT 1 cut(s) 416
ScrFI CCNGG 2 cut(s) 1316, 1362
SfaNI GCATC 3 cut(s) 371, 558, 888
SfcI CTRYAG 2 cut(s) 354, 1383
Sfr274I CTCGAG 1 cut(s) 900
SfuI TTCGAA 1 cut(s) 131
SinI GGWCC 1 cut(s) 1240
SlaI CTCGAG 1 cut(s) 900
SmiMI CAYNNNNRTG 1 cut(s) 923
SmlI CTYRAG 2 cut(s) 137, 900
SmoI CTYRAG 2 cut(s) 137, 900
SpeI ACTAGT 2 cut(s) 277, 953
SsiI CCGC 6 cut(s) 146, 208, 751, 963, 1036, 1376
SspMI CTAG 8 cut(s) 191, 266, 278, 600, 923, 954, 1152, 1437
StyD4I CCNGG 2 cut(s) 1314, 1360
StyI CCWWGG 3 cut(s) 303, 837, 1464
TaaI ACNGT 4 cut(s) 331, 731, 1487, 1495
TaiI ACGT 1 cut(s) 1008
TaqI TCGA 5 cut(s) 131, 771, 891, 901, 1077
TatI WGTACW 2 cut(s) 414, 1533
TfiI GAWTC 3 cut(s) 22, 783, 833
Tru1I TTAA 4 cut(s) 555, 797, 977, 1145
Tru9I TTAA 4 cut(s) 555, 797, 977, 1145
TscAI CASTG 1 cut(s) 1498
TseFI GTSAC 1 cut(s) 1366
TseI GCWGC 3 cut(s) 359, 1382, 1385
Tsp45I GTSAC 1 cut(s) 1366
TspDTI ATGAA 6 cut(s) 91, 102, 276, 329, 1318, 1505
TspRI CASTG 1 cut(s) 1498
Van91I CCANNNNNTGG 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 1240
VspI ATTAAT 1 cut(s) 555
XapI RAATTY 2 cut(s) 619, 1247
XceI RCATGY 1 cut(s) 934
XcmI CCANNNNNNNNNTGG 1 cut(s) 844
XhoI CTCGAG 1 cut(s) 900
XspI CTAG 8 cut(s) 191, 266, 278, 600, 923, 954, 1152, 1437
ZrmI AGTACT 1 cut(s) 416
Zsp2I ATGCAT 1 cut(s) 1225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.