Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001759

Physical Location & Seq

Genomic Coordinates Forward (+)

20751094 .. 20753086

Gene Structure 1993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007763

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGCTCATGTTACTAACTTGCTTAAGGAGCTAAATATGAGCATTCTCTCCAGTCTTTTCCTGCTTTTTGTTCTCTTGCTTACTATTTTCATTTTATTTTCAACTTTTAGATCAGGTGAGAAACTAAAATTGCCGCCATCCCCAACAAGGTTACCCATAATCGGAAACCTCCACCAGCTAGGTACACTCCCACACCGTTCTCTTCACACCCTCTCAAAGAAGTATGGCCCTCTAATGTTATTGCACTTGGGCCAATTTCCGACACTAGTAGTTTCATCGACAGACATGGCCAAGGAAATAAAGAAGACTCATGACAATGTTTGTTGTAGTCGTCCCCAATTTACAGCTACAAATATATTACTCTATGGATGCAAAGACCTAGTGTTTTCTCCTTATGGAGAGTACTGGAGACAAGTTCGGAAAGTCTGTGTTGTTGAACTTCTGAGCCTGAAAAAAGTGCAACAATTTCAGTATGCAAGGGAAGAAGAAGTTGCAGAATTAGTCAAGAACACAAAGAGTGCCTCAGCATCAAGAAGGTTGATGGTTCAACTAATGGCTTTCAGTGTAGGAGATTTCTTCCCTAGTTTAAGATGGATTGACAATCTTAGAGGATTCATTGCACATTTGAAAGCAACTTCTGCCGAATTAGATGGATTCTTTGATCAGTTGATTGAAGAACACAAGGCTATAAAGGGAGAATGTGAACTCAAAACAAGAGATTTTATAGATATACTCCTCAAATACGGAAAGGATGATGCGCTTAACTTGGATCTCACTCAAGATAACTTAAAAGCAATCCTACAGGACATGTTTATTGGAGGAAGTGATACAACATCAACAGCTTTGGAATGGTTAATGGCAGAGCTTGTCAAAAATCCAAATGTGATGGAAAAAGTCCAACAAGAGGTAAGAAGAGTGGTGGGACAAAAGGCAAAAGTAGATGTGGATGATATCAATCAAATGGACTACTTAAAATGTGTCATCAAAGAAACTCTAAGACTACATCCTCCAACTACTCTTATAAATCAGGAAACAACCAGAGCTGTAACATTGGGAGGTTACTATATCCCCATGAAAACAAGAGTACTTGTCAATACATTTGCAATCCAAAGGGACCCCACGTTCTGGGACAAGCAAGAGGAATTCCTCCCGGATCGATTTGAGGACAACTCGATTAACTTCAATGGTCAGGACTTCCAATTTATCCCATTTGGTGGAGGGAGAAGAGGGTGTCCCGGACAGGCCTTTGTGCTGGCTACAATTGAATATATGGTTGCCAATCTTCTATATTGGTTTGATTGGAAGTTACCTAGTGGTAATGTATCAGTTGAGGTCGTAGACATGAGTGAAGTGTATGGACTCGTTGTCTATAAGAAAGCTCCTCTTCATCTTGTCCCCATACCATTCTCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00460 ko00590 ko00591 ko00830 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00460 map00590 map00591 map00830 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

472

Amino Acids

53.67

Weight (kDa)

7.61

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	45 - 178	1e-18	Cytochrome P450
p450	PF00067	186 - 440	3.2e-70	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001759)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g17450 FvH4_5g06440 FvH4_5g06460
malus_domestica	MD00G1167000.v1.1 MD06G1164400.v1.1 MD06G1164700.v1.1 MD14G1169200.v1.1 MD14G1169600.v1.1 MD14G1169700.v1.1
prunus_persica	Prupe.3G184200_v2.0.a1 Prupe.5G163700_v2.0.a1 Prupe.5G163800_v2.0.a1 Prupe.5G164000_v2.0.a1 Prupe.5G164100_v2.0.a1
pyrus_communis	pycom06g14730 pycom14g14150
rosa_chinensis	RchiOBHm_Chr1g0314001 RchiOBHm_Chr4g0420441 RchiOBHm_Chr5g0028981 RchiOBHm_Chr7g0192271 RchiOBHm_Chr7g0192301 RchiOBHm_Chr7g0233491
rosa_laevigata	RLG00000004378 RLG00000004380 RLG00000007763 RLG00000033133
rosa_multiflora	Rmu_sc0001559.1_g000001 Rmu_sc0009042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00050910 Rroxscaffold_3G00263130
rosa_rugosa	Rorug03G0295500 Rorug05G0112200 Rorug07G0000300 Rorug07G0000400
rosa_samantha	Rh4AG225500 Rh5AG204200 Rh5CG223300 Rh7AG124500 Rh7AG124700 Rh7BG126300 Rh7BG126500 Rh7DG128100 Rh7DG128300
rosa_wichuraiana	Rw0G008520 Rw4G011870 Rw5G018510 Rw7G010670 Rw7G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1022
AccB7I	CCANNNNNTGG	2 cut(s)	1125, 1214
AccI	GTMKAC	1 cut(s)	1338
AciI	CCGC	1 cut(s)	134
AclWI	GGATC	2 cut(s)	777, 1161
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	1142
AfaI	GTAC	3 cut(s)	184, 404, 1086
AfiI	CCNNNNNNNGG	5 cut(s)	147, 161, 904, 1125, 1214
AflII	CTTAAG	1 cut(s)	23
AflIII	ACRYGT	1 cut(s)	807
AgsI	TTSAA	7 cut(s)	102, 437, 548, 628, 674, 1183, 1265
AhdI	GACNNNNNGTC	1 cut(s)	1364
AhlI	ACTAGT	1 cut(s)	265
AloI	GAACNNNNNNTCC	2 cut(s)	1106, 1138
AluBI	AGCT	7 cut(s)	31, 178, 347, 842, 865, 1043, 1379
AluI	AGCT	7 cut(s)	31, 178, 347, 842, 865, 1043, 1379
Alw26I	GTCTC	1 cut(s)	403
AlwI	GGATC	2 cut(s)	777, 1161
AoxI	GGCC	4 cut(s)	226, 250, 288, 1242
ApoI	RAATTY	1 cut(s)	1142
AspLEI	GCGC	1 cut(s)	760
AspS9I	GGNCC	3 cut(s)	227, 250, 1114
AsuC2I	CCSGG	2 cut(s)	1151, 1236
AsuHPI	GGTGA	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	1114
BalI	TGGCCA	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	311
BbvCI	CCTCAGC	1 cut(s)	523
BccI	CCATC	5 cut(s)	145, 535, 585, 644, 880
BclI	TGATCA	1 cut(s)	661
BcnI	CCSGG	2 cut(s)	1151, 1236
BcoDI	GTCTC	1 cut(s)	403
BcuI	ACTAGT	1 cut(s)	265
BfaI	CTAG	5 cut(s)	179, 266, 380, 582, 1311
BfmI	CTRYAG	1 cut(s)	800
BfrI	CTTAAG	1 cut(s)	23
BisI	GCNGC	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	135
BmcAI	AGTACT	2 cut(s)	404, 1086
Bme1390I	CCNGG	2 cut(s)	1151, 1236
Bme18I	GGWCC	1 cut(s)	1114
BmeRI	GACNNNNNGTC	1 cut(s)	1364
BmgT120I	GGNCC	3 cut(s)	227, 250, 1114
BmiI	GGNNCC	2 cut(s)	1115, 1116
BmrFI	CCNGG	2 cut(s)	1151, 1236
BmsI	GCATC	3 cut(s)	359, 536, 745
BpiI	GAAGAC	1 cut(s)	311
BplI	GAGNNNNNCTC	2 cut(s)	1154, 1186
BpmI	CTGGAG	2 cut(s)	34, 427
Bpu10I	CCTNAGC	1 cut(s)	523
BpuEI	CTTGAG	1 cut(s)	762
BpuMI	CCSGG	2 cut(s)	1151, 1236
Bsa29I	ATCGAT	1 cut(s)	1156
BsaBI	GATNNNNATC	1 cut(s)	954
BsaJI	CCNNGG	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	5 cut(s)	147, 161, 904, 1125, 1214
Bse1I	ACTGG	2 cut(s)	51, 410
Bse3DI	GCAATG	1 cut(s)	615
Bse8I	GATNNNNATC	1 cut(s)	954
BseCI	ATCGAT	1 cut(s)	1156
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	5 cut(s)	137, 374, 757, 952, 1003
BseJI	GATNNNNATC	1 cut(s)	954
BseLI	CCNNNNNNNGG	5 cut(s)	147, 161, 904, 1125, 1214
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	2 cut(s)	434, 537
BseNI	ACTGG	2 cut(s)	51, 410
BseRI	GAGGAG	2 cut(s)	725, 1371
BshFI	GGCC	4 cut(s)	228, 252, 290, 1244
BshVI	ATCGAT	1 cut(s)	1156
BsiSI	CCGG	2 cut(s)	1151, 1236
BslFI	GGGAC	6 cut(s)	318, 936, 1127, 1142, 1218, 1379
BslI	CCNNNNNNNGG	5 cut(s)	147, 161, 904, 1125, 1214
BsmAI	GTCTC	1 cut(s)	403
BsmFI	GGGAC	6 cut(s)	318, 936, 1127, 1142, 1218, 1379
BsmI	GAATGC	1 cut(s)	42
BsnI	GGCC	4 cut(s)	228, 252, 290, 1244
Bsp143I	GATC	4 cut(s)	110, 661, 769, 1153
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	4 cut(s)	228, 252, 290, 1244
BspCNI	CTCAG	2 cut(s)	435, 536
BspDI	ATCGAT	1 cut(s)	1156
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	2 cut(s)	1115, 1116
BspPI	GGATC	2 cut(s)	777, 1161
BspTI	CTTAAG	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	615
BsrI	ACTGG	2 cut(s)	51, 410
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	4 cut(s)	110, 661, 769, 1153
BssT1I	CCWWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	4 cut(s)	207, 907, 1219, 1389
BstAFI	CTTAAG	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstC8I	GCNNGC	1 cut(s)	1254
BstDEI	CTNAG	4 cut(s)	443, 523, 605, 995
BstEII	GGTNACC	1 cut(s)	150
BstF5I	GGATG	5 cut(s)	137, 374, 757, 952, 1003
BstHHI	GCGC	1 cut(s)	760
BstKTI	GATC	4 cut(s)	113, 664, 772, 1156
BstMAI	GTCTC	1 cut(s)	403
BstMBI	GATC	4 cut(s)	110, 661, 769, 1153
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 638
BstNSI	RCATGY	1 cut(s)	811
BstPI	GGTNACC	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	1149, 1234
BstSFI	CTRYAG	1 cut(s)	800
BstV2I	GAAGAC	1 cut(s)	311
BstX2I	RGATCY	1 cut(s)	769
BstYI	RGATCY	1 cut(s)	769
Bsu15I	ATCGAT	1 cut(s)	1156
BsuRI	GGCC	4 cut(s)	228, 252, 290, 1244
BsuTUI	ATCGAT	1 cut(s)	1156
BtsCI	GGATG	5 cut(s)	137, 374, 757, 952, 1003
BtsIMutI	CAGTG	1 cut(s)	568
Cac8I	GCNNGC	1 cut(s)	1254
CciI	TCATGA	1 cut(s)	310
CfoI	GCGC	1 cut(s)	760
Cfr13I	GGNCC	3 cut(s)	227, 250, 1114
ClaI	ATCGAT	1 cut(s)	1156
Csp6I	GTAC	3 cut(s)	183, 403, 1085
CviAII	CATG	6 cut(s)	8, 286, 311, 808, 1072, 1342
CviQI	GTAC	3 cut(s)	183, 403, 1085
DdeI	CTNAG	4 cut(s)	443, 523, 605, 995
DpnI	GATC	4 cut(s)	112, 663, 771, 1155
DpnII	GATC	4 cut(s)	110, 661, 769, 1153
DriI	GACNNNNNGTC	1 cut(s)	1364
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	4 cut(s)	207, 907, 1219, 1389
Eam1105I	GACNNNNNGTC	1 cut(s)	1364
EarI	CTCTTC	4 cut(s)	207, 907, 1219, 1389
Eco130I	CCWWGG	1 cut(s)	291
Eco147I	AGGCCT	1 cut(s)	1244
Eco32I	GATATC	1 cut(s)	952
Eco47I	GGWCC	1 cut(s)	1114
Eco91I	GGTNACC	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	1114
EcoO65I	GGTNACC	1 cut(s)	150
EcoRI	GAATTC	1 cut(s)	1142
EcoRV	GATATC	1 cut(s)	952
EcoT14I	CCWWGG	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	6 cut(s)	11, 289, 314, 811, 1075, 1345
FalI	AAGNNNNNCTT	2 cut(s)	1368, 1400
FaqI	GGGAC	6 cut(s)	318, 936, 1127, 1142, 1218, 1379
FatI	CATG	6 cut(s)	7, 285, 310, 807, 1071, 1341
FbaI	TGATCA	1 cut(s)	661
FblI	GTMKAC	1 cut(s)	1338
Fnu4HI	GCNGC	1 cut(s)	134
FokI	GGATG	5 cut(s)	124, 381, 764, 959, 990
Fsp4HI	GCNGC	1 cut(s)	134
FspBI	CTAG	5 cut(s)	179, 266, 380, 582, 1311
GlaI	GCGC	1 cut(s)	759
GluI	GCNGC	1 cut(s)	134
GsuI	CTGGAG	2 cut(s)	34, 427
HaeIII	GGCC	4 cut(s)	228, 252, 290, 1244
HapII	CCGG	2 cut(s)	1151, 1236
HhaI	GCGC	1 cut(s)	760
Hin1II	CATG	6 cut(s)	11, 289, 314, 811, 1075, 1345
Hin6I	GCGC	1 cut(s)	758
HinP1I	GCGC	1 cut(s)	758
HinfI	GANTC	4 cut(s)	307, 612, 654, 1359
HpaII	CCGG	2 cut(s)	1151, 1236
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	3 cut(s)	185, 704, 1339
Hpy188I	TCNGA	4 cut(s)	164, 261, 420, 444
Hpy188III	TCNNGA	6 cut(s)	311, 505, 531, 779, 1028, 1190
Hpy8I	GTNNAC	3 cut(s)	185, 704, 1339
HpyAV	CCTTC	1 cut(s)	528
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	1 cut(s)	1121
HpyCH4V	TGCA	7 cut(s)	244, 372, 460, 476, 494, 620, 1103
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 638
HpyF3I	CTNAG	4 cut(s)	443, 523, 605, 995
HpySE526I	ACGT	1 cut(s)	1121
Hsp92II	CATG	6 cut(s)	11, 289, 314, 811, 1075, 1345
HspAI	GCGC	1 cut(s)	758
KflI	GGGWCCC	1 cut(s)	1114
Ksp22I	TGATCA	1 cut(s)	661
Kzo9I	GATC	4 cut(s)	110, 661, 769, 1153
LmnI	GCTCC	2 cut(s)	28, 1384
LweI	GCATC	3 cut(s)	359, 536, 745
MaeI	CTAG	5 cut(s)	179, 266, 380, 582, 1311
MaeII	ACGT	1 cut(s)	1121
MaeIII	GTNAC	5 cut(s)	10, 150, 1045, 1058, 1305
MalI	GATC	4 cut(s)	112, 663, 771, 1155
MboI	GATC	4 cut(s)	110, 661, 769, 1153
MfeI	CAATTG	1 cut(s)	1260
MflI	RGATCY	1 cut(s)	769
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	9 cut(s)	128, 254, 338, 464, 497, 644, 1142, 1199, 1260
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	2 cut(s)	301, 1353
MmeI	TCCRAC	3 cut(s)	284, 922, 1034
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	7 cut(s)	24, 587, 762, 788, 854, 971, 1176
MslI	CAYNNNNRTG	1 cut(s)	315
Msp20I	TGGCCA	1 cut(s)	290
MspCI	CTTAAG	1 cut(s)	23
MspI	CCGG	2 cut(s)	1151, 1236
MspR9I	CCNGG	2 cut(s)	1151, 1236
MunI	CAATTG	1 cut(s)	1260
Mva1269I	GAATGC	1 cut(s)	42
MwoI	GCNNNNNNNGC	2 cut(s)	28, 638
NciI	CCSGG	2 cut(s)	1151, 1236
NdeII	GATC	4 cut(s)	110, 661, 769, 1153
NlaIII	CATG	6 cut(s)	11, 289, 314, 811, 1075, 1345
NlaIV	GGNNCC	2 cut(s)	1115, 1116
NspI	RCATGY	1 cut(s)	811
PagI	TCATGA	1 cut(s)	310
PceI	AGGCCT	1 cut(s)	1244
PciI	ACATGT	1 cut(s)	807
PctI	GAATGC	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	612, 654
PflMI	CCANNNNNTGG	2 cut(s)	1125, 1214
PfoI	TCCNGGA	2 cut(s)	1149, 1234
PkrI	GCNGC	1 cut(s)	135
PleI	GAGTC	2 cut(s)	301, 1353
PpsI	GAGTC	2 cut(s)	301, 1353
PpuMI	RGGWCCY	1 cut(s)	1114
PscI	ACATGT	1 cut(s)	807
PsiI	TTATAA	1 cut(s)	1022
Psp5II	RGGWCCY	1 cut(s)	1114
PspEI	GGTNACC	1 cut(s)	150
PspN4I	GGNNCC	2 cut(s)	1115, 1116
PspPI	GGNCC	3 cut(s)	227, 250, 1114
PspPPI	RGGWCCY	1 cut(s)	1114
PsuI	RGATCY	1 cut(s)	769
RsaI	GTAC	3 cut(s)	184, 404, 1086
RsaNI	GTAC	3 cut(s)	183, 403, 1085
RseI	CAYNNNNRTG	1 cut(s)	315
SaqAI	TTAA	7 cut(s)	24, 587, 762, 788, 854, 971, 1176
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	4 cut(s)	110, 661, 769, 1153
Sau96I	GGNCC	3 cut(s)	227, 250, 1114
ScaI	AGTACT	2 cut(s)	404, 1086
SchI	GAGTC	2 cut(s)	301, 1353
ScrFI	CCNGG	2 cut(s)	1151, 1236
SfaNI	GCATC	3 cut(s)	359, 536, 745
SfcI	CTRYAG	1 cut(s)	800
SinI	GGWCC	1 cut(s)	1114
SmiMI	CAYNNNNRTG	1 cut(s)	315
SmlI	CTYRAG	2 cut(s)	23, 777
SmoI	CTYRAG	2 cut(s)	23, 777
SpeI	ACTAGT	1 cut(s)	265
Sse9I	AATT	9 cut(s)	128, 254, 338, 464, 497, 644, 1142, 1199, 1260
SseBI	AGGCCT	1 cut(s)	1244
SsiI	CCGC	1 cut(s)	134
SspMI	CTAG	5 cut(s)	179, 266, 380, 582, 1311
StuI	AGGCCT	1 cut(s)	1244
StyD4I	CCNGG	2 cut(s)	1149, 1234
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	1 cut(s)	1124
TaqI	TCGA	3 cut(s)	278, 1156, 1172
TasI	AATT	9 cut(s)	128, 254, 338, 464, 497, 644, 1142, 1199, 1260
TatI	WGTACW	2 cut(s)	402, 1084
TauI	GCSGC	1 cut(s)	136
TfiI	GAWTC	2 cut(s)	612, 654
Tru1I	TTAA	7 cut(s)	24, 587, 762, 788, 854, 971, 1176
Tru9I	TTAA	7 cut(s)	24, 587, 762, 788, 854, 971, 1176
TscAI	CASTG	1 cut(s)	568
TspDTI	ATGAA	5 cut(s)	79, 264, 604, 1088, 1376
TspGWI	ACGGA	1 cut(s)	759
TspRI	CASTG	1 cut(s)	568
Van91I	CCANNNNNTGG	2 cut(s)	1125, 1214
Vha464I	CTTAAG	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	1114
XapI	RAATTY	1 cut(s)	1142
XceI	RCATGY	1 cut(s)	811
XmiI	GTMKAC	1 cut(s)	1338
XspI	CTAG	5 cut(s)	179, 266, 380, 582, 1311
ZrmI	AGTACT	2 cut(s)	404, 1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.