Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001759

Physical Location & Seq

Genomic Coordinates Reverse (-)

38246708 .. 38248500

Gene Structure 1793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1167000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGCTCTTCTAGCACTTGTGTTTGAGCAGCTGCAGAAGAATGTCTTTCTTCTTCCTCTTCTCCTCCTTTCTGCGTTTATTCTCTTTTCGTTTACTAGATCATCGTCCAATGGCGATGAGAAACGCAAACTCAAGTTACCACCTTCCCCTCCAAGGTTGCCATTGATCGGAAACCTTCACCAGTTAGGCACATTCCCGCACCTTTCTCTCCATGCTCTCTCGAAAAAGTATGGCGATTTAATGCTAGTGCATTTGGGGAAAGTTCCGACTCTGATTGTTTCGTCTGCAGAGATGGCCAAGGAGGTGATGAAGACGCAGGACATTGCTTTCTGCAGCCGGCCAAAAGCCACTGCTCCAGGAATATTGTTCTATGACGCTCATGATGTGGGGTTTGCTCCTTACGGGGAGTACTGGAGGCAAGTTCGGAAAATCTGTGTTCTTGAGTTTCTCAGTCTTAAGAAGGTGTCACAGTTTCAGTACGCAAGGGTGGAAGAAGTTTCCGAGTTGGTCGGAAAGATTCGCAAAGTGTCGAGTCTCAATGGCGGGGGTCCTATTGTTCTGAGTGATCTGCTGGTGGCAACCTCCAACAACATCATCTGCAGGTGTATTCTCGGACAAAAGTTTGAGGGCGAAGAGAACAAGTGGTTCGGAGATCTGACGAAAGATTTGATCTGCCAACTCACGAGTTTCAGTTTTACGGATTACTTTGGTCCGAGGATGAGTTGGCTCGACCGTGCTAGGGGCCACATTAAACATTTGACATCAATTTGGTCCGAATTTGATAAGTTTTTCGATAAGTTGATTGCCGAACATAAGGAGGCAGAGAAAGAAGGCAAGCCTCGCAAGAAGGATTTCGTGGATATTCTCCTCCAAGTTCAAAAGGATGGCAATGACTTTGAGCTCAAAAGTGACCACCTCAAAGCACTTCTACTGTTGGACTGCCATGATATGGTTGATGACAGAGCTTGGGAAAAATCAAAGTGTGATGAAGAAAGCCAAGAAGAGGTAAGAAGAGTGGTGGGGAAAAAGGGATTTGTAGATGAGAATGTTGACATCCCCCAAATGACTTACATGATATGTTGCATCAAAGAAAATATGAGAGTTCATCCTCCAGCGCCTCTTTTAATTCCCCGTGAAACAAGTACAGATGAGAAATTGGGAGGTTACAATATCCCTGCGAAAACACAAGTGTTTGTCAGCGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00460 ko00590 ko00591 ko00830 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00460 map00590 map00591 map00830 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

402

Amino Acids

45.52

Weight (kDa)

7.98

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	47 - 310	6.3e-36	Cytochrome P450
p450	PF00067	330 - 400	2e-15	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001759)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g17450 FvH4_5g06440 FvH4_5g06460
malus_domestica	MD00G1167000.v1.1 MD06G1164400.v1.1 MD06G1164700.v1.1 MD14G1169200.v1.1 MD14G1169600.v1.1 MD14G1169700.v1.1
prunus_persica	Prupe.3G184200_v2.0.a1 Prupe.5G163700_v2.0.a1 Prupe.5G163800_v2.0.a1 Prupe.5G164000_v2.0.a1 Prupe.5G164100_v2.0.a1
pyrus_communis	pycom06g14730 pycom14g14150
rosa_chinensis	RchiOBHm_Chr1g0314001 RchiOBHm_Chr4g0420441 RchiOBHm_Chr5g0028981 RchiOBHm_Chr7g0192271 RchiOBHm_Chr7g0192301 RchiOBHm_Chr7g0233491
rosa_laevigata	RLG00000004378 RLG00000004380 RLG00000007763 RLG00000033133
rosa_multiflora	Rmu_sc0001559.1_g000001 Rmu_sc0009042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00050910 Rroxscaffold_3G00263130
rosa_rugosa	Rorug03G0295500 Rorug05G0112200 Rorug07G0000300 Rorug07G0000400
rosa_samantha	Rh4AG225500 Rh5AG204200 Rh5CG223300 Rh7AG124500 Rh7AG124700 Rh7BG126300 Rh7BG126500 Rh7DG128100 Rh7DG128300
rosa_wichuraiana	Rw0G008520 Rw4G011870 Rw5G018510 Rw7G010670 Rw7G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	591
Acc36I	ACCTGC	1 cut(s)	591
AccB7I	CCANNNNNTGG	1 cut(s)	949
AciI	CCGC	2 cut(s)	197, 543
AcoI	YGGCCR	2 cut(s)	294, 338
AcsI	RAATTY	1 cut(s)	776
AfaI	GTAC	3 cut(s)	410, 479, 1144
AfiI	CCNNNNNNNGG	5 cut(s)	153, 167, 739, 949, 1003
AflII	CTTAAG	1 cut(s)	455
AgsI	TTSAA	1 cut(s)	878
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	3 cut(s)	31, 901, 965
AluI	AGCT	3 cut(s)	31, 901, 965
Alw21I	GWGCWC	1 cut(s)	903
Alw26I	GTCTC	1 cut(s)	539
AoxI	GGCC	3 cut(s)	294, 338, 742
ApeKI	GCWGC	3 cut(s)	28, 31, 333
ApoI	RAATTY	1 cut(s)	776
ArsI	GACNNNNNNTTYG	2 cut(s)	649, 681
Asp700I	GAANNNNTTC	1 cut(s)	851
AspLEI	GCGC	2 cut(s)	1117, 1202
AspS9I	GGNCC	4 cut(s)	548, 710, 742, 771
AsuHPI	GGTGA	2 cut(s)	170, 316
AvaII	GGWCC	3 cut(s)	548, 710, 771
BalI	TGGCCA	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	903
BauI	CACGAG	1 cut(s)	682
BbsI	GAAGAC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	903
BbvI	GCAGC	3 cut(s)	18, 40, 345
BccI	CCATC	2 cut(s)	286, 878
BciT130I	CCWGG	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	539
BfaI	CTAG	4 cut(s)	11, 96, 245, 738
BfmI	CTRYAG	4 cut(s)	32, 285, 331, 598
BfoI	RGCGCY	1 cut(s)	1118
BfrI	CTTAAG	1 cut(s)	455
BfuAI	ACCTGC	1 cut(s)	591
BglII	AGATCT	1 cut(s)	652
BisI	GCNGC	3 cut(s)	29, 32, 334
BlsI	GCNGC	3 cut(s)	30, 33, 335
BmcAI	AGTACT	1 cut(s)	410
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	3 cut(s)	548, 710, 771
BmgT120I	GGNCC	4 cut(s)	548, 710, 742, 771
BmiI	GGNNCC	2 cut(s)	549, 743
BmrFI	CCNGG	1 cut(s)	357
BmsI	GCATC	1 cut(s)	1092
BpiI	GAAGAC	1 cut(s)	317
BpmI	CTGGAG	3 cut(s)	339, 433, 1095
BpuEI	CTTGAG	2 cut(s)	116, 461
BsaJI	CCNNGG	3 cut(s)	152, 297, 713
Bsc4I	CCNNNNNNNGG	5 cut(s)	153, 167, 739, 949, 1003
Bse118I	RCCGGY	1 cut(s)	336
Bse1I	ACTGG	2 cut(s)	181, 416
Bse3DI	GCAATG	2 cut(s)	321, 895
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	3 cut(s)	152, 297, 713
BseGI	GGATG	4 cut(s)	723, 889, 1053, 1105
BseLI	CCNNNNNNNGG	5 cut(s)	153, 167, 739, 949, 1003
BseMI	GCAATG	2 cut(s)	321, 895
BseMII	CTCAG	2 cut(s)	463, 551
BseNI	ACTGG	2 cut(s)	181, 416
BseRI	GAGGAG	2 cut(s)	53, 857
BseXI	GCAGC	3 cut(s)	18, 40, 345
Bsh1285I	CGRYCG	1 cut(s)	733
BshFI	GGCC	3 cut(s)	296, 340, 744
BsiEI	CGRYCG	1 cut(s)	733
BsiHKAI	GWGCWC	1 cut(s)	903
BsiSI	CCGG	1 cut(s)	337
BslI	CCNNNNNNNGG	5 cut(s)	153, 167, 739, 949, 1003
BsmAI	GTCTC	1 cut(s)	539
BsnI	GGCC	3 cut(s)	296, 340, 744
Bsp1286I	GDGCHC	1 cut(s)	903
Bsp143I	GATC	5 cut(s)	98, 165, 565, 652, 669
BspACI	CCGC	2 cut(s)	197, 543
BspANI	GGCC	3 cut(s)	296, 340, 744
BspCNI	CTCAG	2 cut(s)	462, 552
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	2 cut(s)	549, 743
BspMAI	CTGCAG	4 cut(s)	36, 289, 335, 602
BspMI	ACCTGC	1 cut(s)	591
BspQI	GCTCTTC	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	455
BsrDI	GCAATG	2 cut(s)	321, 895
BsrFI	RCCGGY	1 cut(s)	336
BsrI	ACTGG	2 cut(s)	181, 416
BssAI	RCCGGY	1 cut(s)	336
BssECI	CCNNGG	3 cut(s)	152, 297, 713
BssMI	GATC	5 cut(s)	98, 165, 565, 652, 669
BssSI	CACGAG	1 cut(s)	682
BssT1I	CCWWGG	2 cut(s)	152, 297
Bst2BI	CACGAG	1 cut(s)	682
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	3 cut(s)	471, 734, 933
Bst6I	CTCTTC	5 cut(s)	12, 63, 627, 996, 1006
BstAFI	CTTAAG	1 cut(s)	455
BstC8I	GCNNGC	2 cut(s)	338, 836
BstDEI	CTNAG	2 cut(s)	449, 560
BstF5I	GGATG	4 cut(s)	723, 889, 1053, 1105
BstH2I	RGCGCY	1 cut(s)	1118
BstHHI	GCGC	2 cut(s)	1117, 1202
BstKTI	GATC	5 cut(s)	101, 168, 568, 655, 672
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	5 cut(s)	98, 165, 565, 652, 669
BstMCI	CGRYCG	1 cut(s)	733
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 293, 840
BstNI	CCWGG	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	355
BstSFI	CTRYAG	4 cut(s)	32, 285, 331, 598
BstV1I	GCAGC	3 cut(s)	18, 40, 345
BstV2I	GAAGAC	1 cut(s)	317
BstX2I	RGATCY	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	652
BsuRI	GGCC	3 cut(s)	296, 340, 744
BtgZI	GCGATG	1 cut(s)	129
BtsCI	GGATG	4 cut(s)	723, 889, 1053, 1105
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	348
BveI	ACCTGC	1 cut(s)	591
Cac8I	GCNNGC	2 cut(s)	338, 836
CciI	TCATGA	1 cut(s)	379
CfoI	GCGC	2 cut(s)	1117, 1202
Cfr10I	RCCGGY	1 cut(s)	336
Cfr13I	GGNCC	4 cut(s)	548, 710, 742, 771
CseI	GACGC	2 cut(s)	322, 383
Csp6I	GTAC	3 cut(s)	409, 478, 1143
CviAII	CATG	4 cut(s)	212, 380, 944, 1072
CviQI	GTAC	3 cut(s)	409, 478, 1143
DdeI	CTNAG	2 cut(s)	449, 560
DpnI	GATC	5 cut(s)	100, 167, 567, 654, 671
DpnII	GATC	5 cut(s)	98, 165, 565, 652, 669
EaeI	YGGCCR	2 cut(s)	294, 338
Eam1104I	CTCTTC	5 cut(s)	12, 63, 627, 996, 1006
EarI	CTCTTC	5 cut(s)	12, 63, 627, 996, 1006
Ecl136II	GAGCTC	1 cut(s)	901
Eco130I	CCWWGG	2 cut(s)	152, 297
Eco24I	GRGCYC	1 cut(s)	903
Eco47I	GGWCC	3 cut(s)	548, 710, 771
Eco53kI	GAGCTC	1 cut(s)	901
EcoICRI	GAGCTC	1 cut(s)	901
EcoO109I	RGGNCCY	1 cut(s)	548
EcoRII	CCWGG	1 cut(s)	355
EcoT14I	CCWWGG	2 cut(s)	152, 297
EcoT38I	GRGCYC	1 cut(s)	903
ErhI	CCWWGG	2 cut(s)	152, 297
FaeI	CATG	4 cut(s)	215, 383, 947, 1075
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FatI	CATG	4 cut(s)	211, 379, 943, 1071
FauI	CCCGC	2 cut(s)	204, 536
Fnu4HI	GCNGC	3 cut(s)	29, 32, 334
FokI	GGATG	4 cut(s)	730, 896, 1040, 1092
FriOI	GRGCYC	1 cut(s)	903
Fsp4HI	GCNGC	3 cut(s)	29, 32, 334
FspBI	CTAG	4 cut(s)	11, 96, 245, 738
GlaI	GCGC	2 cut(s)	1116, 1201
GluI	GCNGC	3 cut(s)	29, 32, 334
GsuI	CTGGAG	3 cut(s)	339, 433, 1095
HaeII	RGCGCY	1 cut(s)	1118
HaeIII	GGCC	3 cut(s)	296, 340, 744
HapII	CCGG	1 cut(s)	337
HgaI	GACGC	2 cut(s)	322, 383
HhaI	GCGC	2 cut(s)	1117, 1202
Hin1II	CATG	4 cut(s)	215, 383, 947, 1075
Hin6I	GCGC	2 cut(s)	1115, 1200
HinP1I	GCGC	2 cut(s)	1115, 1200
HincII	GTYRAC	1 cut(s)	1051
HindII	GTYRAC	1 cut(s)	1051
HinfI	GANTC	3 cut(s)	268, 517, 532
HpaII	CCGG	1 cut(s)	337
HphI	GGTGA	2 cut(s)	170, 316
Hpy166II	GTNNAC	2 cut(s)	93, 1051
Hpy188III	TCNNGA	4 cut(s)	220, 380, 440, 682
Hpy8I	GTNNAC	2 cut(s)	93, 1051
HpyAV	CCTTC	5 cut(s)	153, 185, 454, 824, 841
HpyCH4III	ACNGT	3 cut(s)	471, 734, 933
HpyCH4V	TGCA	6 cut(s)	34, 250, 287, 333, 600, 1083
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 293, 840
HpyF3I	CTNAG	2 cut(s)	449, 560
Hsp92II	CATG	4 cut(s)	215, 383, 947, 1075
HspAI	GCGC	2 cut(s)	1115, 1200
KroI	GCCGGC	1 cut(s)	336
KroNI	GCCGGC	1 cut(s)	338
Kzo9I	GATC	5 cut(s)	98, 165, 565, 652, 669
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	2 cut(s)	358, 400
Lsp1109I	GCAGC	3 cut(s)	18, 40, 345
LweI	GCATC	1 cut(s)	1092
MaeI	CTAG	4 cut(s)	11, 96, 245, 738
MaeIII	GTNAC	4 cut(s)	135, 465, 908, 1163
MalI	GATC	5 cut(s)	100, 167, 567, 654, 671
MboI	GATC	5 cut(s)	98, 165, 565, 652, 669
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	1 cut(s)	903
MlsI	TGGCCA	1 cut(s)	296
MluCI	AATT	4 cut(s)	765, 776, 1125, 1154
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	2 cut(s)	262, 541
MmeI	TCCRAC	4 cut(s)	290, 490, 609, 915
Mox20I	TGGCCA	1 cut(s)	296
MroNI	GCCGGC	1 cut(s)	336
MroXI	GAANNNNTTC	1 cut(s)	851
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	4 cut(s)	239, 456, 750, 1124
Msp20I	TGGCCA	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	31
MspCI	CTTAAG	1 cut(s)	455
MspI	CCGG	1 cut(s)	337
MspR9I	CCNGG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	3 cut(s)	11, 293, 840
NaeI	GCCGGC	1 cut(s)	338
NdeII	GATC	5 cut(s)	98, 165, 565, 652, 669
NgoMIV	GCCGGC	1 cut(s)	336
NlaIII	CATG	4 cut(s)	215, 383, 947, 1075
NlaIV	GGNNCC	2 cut(s)	549, 743
NmuCI	GTSAC	2 cut(s)	465, 908
PagI	TCATGA	1 cut(s)	379
PaqCI	CACCTGC	1 cut(s)	591
PciSI	GCTCTTC	1 cut(s)	12
PdiI	GCCGGC	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	851
PfeI	GAWTC	1 cut(s)	517
PflMI	CCANNNNNTGG	1 cut(s)	949
PfoI	TCCNGGA	1 cut(s)	355
PkrI	GCNGC	3 cut(s)	30, 33, 335
PleI	GAGTC	2 cut(s)	262, 540
PpsI	GAGTC	2 cut(s)	262, 540
PpuMI	RGGWCCY	1 cut(s)	548
Psp124BI	GAGCTC	1 cut(s)	903
Psp5II	RGGWCCY	1 cut(s)	548
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	2 cut(s)	549, 743
PspPI	GGNCC	4 cut(s)	548, 710, 742, 771
PspPPI	RGGWCCY	1 cut(s)	548
PstI	CTGCAG	4 cut(s)	36, 289, 335, 602
PsuI	RGATCY	1 cut(s)	652
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	3 cut(s)	410, 479, 1144
RsaNI	GTAC	3 cut(s)	409, 478, 1143
SacI	GAGCTC	1 cut(s)	903
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	4 cut(s)	239, 456, 750, 1124
SatI	GCNGC	3 cut(s)	29, 32, 334
Sau3AI	GATC	5 cut(s)	98, 165, 565, 652, 669
Sau96I	GGNCC	4 cut(s)	548, 710, 742, 771
ScaI	AGTACT	1 cut(s)	410
SchI	GAGTC	2 cut(s)	262, 541
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	903
SfaNI	GCATC	1 cut(s)	1092
SfcI	CTRYAG	4 cut(s)	32, 285, 331, 598
SinI	GGWCC	3 cut(s)	548, 710, 771
SmlI	CTYRAG	3 cut(s)	131, 440, 455
SmoI	CTYRAG	3 cut(s)	131, 440, 455
Sse9I	AATT	4 cut(s)	765, 776, 1125, 1154
SsiI	CCGC	2 cut(s)	197, 543
SspI	AATATT	1 cut(s)	363
SspMI	CTAG	4 cut(s)	11, 96, 245, 738
SstI	GAGCTC	1 cut(s)	903
StyD4I	CCNGG	1 cut(s)	355
StyI	CCWWGG	2 cut(s)	152, 297
TaaI	ACNGT	3 cut(s)	471, 734, 933
TaqI	TCGA	4 cut(s)	221, 530, 729, 792
TasI	AATT	4 cut(s)	765, 776, 1125, 1154
TatI	WGTACW	2 cut(s)	408, 1142
TfiI	GAWTC	1 cut(s)	517
Tru1I	TTAA	4 cut(s)	239, 456, 750, 1124
Tru9I	TTAA	4 cut(s)	239, 456, 750, 1124
TscAI	CASTG	1 cut(s)	355
TseFI	GTSAC	2 cut(s)	465, 908
TseI	GCWGC	3 cut(s)	28, 31, 333
Tsp45I	GTSAC	2 cut(s)	465, 908
TspDTI	ATGAA	3 cut(s)	323, 1002, 1094
TspGWI	ACGGA	1 cut(s)	713
TspRI	CASTG	1 cut(s)	355
Van91I	CCANNNNNTGG	1 cut(s)	949
Vha464I	CTTAAG	1 cut(s)	455
VpaK11BI	GGWCC	3 cut(s)	548, 710, 771
XapI	RAATTY	1 cut(s)	776
XmnI	GAANNNNTTC	1 cut(s)	851
XspI	CTAG	4 cut(s)	11, 96, 245, 738
ZrmI	AGTACT	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.