Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001759

Physical Location & Seq

Genomic Coordinates Forward (+)

9380081 .. 9386726

Gene Structure 6646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG126300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGCTGAGCACAACCTTCAACAACATACTGTCTAGGTGTGTTACTGGAAACAGGTTTGTAGAGGAAAATGATAATTGGTTTGGAGAGGCATCAAGAAGGTTGTTGGTTCAACTCACGACTTTCAGTTTTGGAGATATGTTCCCTTGTTTGAGATGGATTGACAATCTTAGAGGATTCATTGCAAGTTTGAAAGAAACTTCTGCCAAATTAGATGGGTTCTTTGATCAGTTGATTGAAGAACACAAGACCACAAAGGCAGAAGGTATGCCCGAAACAAGTGATTTTGTGGATATTCTTGTCAAACTTCAAAAAGATGACATACTTAACTTGGATCTCACTCAAGACAACTTGAAAGCAATCCTACAGGACATGTTTATTGGCGGAAGTGATACTACAACGACAGCTTTGGAATGGCTAATGGCAGAGCTTGTGAGAAATCCAACTCCTCTTTTACTTCCGCGAGAAACAATCGCAGCTGTAACACTGGGAGGTTACTATATCCCCGCAAAAACAAGGGTACTTGTCAATGCATTTGCTATCCAAAGGGACCCCAAGTTCTGGGACAAGCCAGAGGAGTTCCTCCCGGAGCGATTTGAGGACAACTCAATTGATTTTAAGGGCCAGGACTTCCAATTTGTCCCGTTCGGTGGTGGGAGAAGAGGTTGTCCAGGGCAGGCCTTTGCGGTGGCTGGAGCTGAATATGTGGTTGCAAATCTTCTGTACTGGTTTGACTGGAAGTTGCCAAATGATAATGTTTCGGCCGATGCCTTAGACATGAGCGAGGTTTTTGGAATCACTGTCCATAAGAAAGCTCCTCTTCATCTTGTCCCCATACCATACTCCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00460 ko00590 ko00591 ko00830 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00460 map00590 map00591 map00830 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

282

Amino Acids

31.86

Weight (kDa)

4.76

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	4 - 148	9.6e-17	Cytochrome P450
p450	PF00067	147 - 260	2.4e-32	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001759)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g17450 FvH4_5g06440 FvH4_5g06460
malus_domestica	MD00G1167000.v1.1 MD06G1164400.v1.1 MD06G1164700.v1.1 MD14G1169200.v1.1 MD14G1169600.v1.1 MD14G1169700.v1.1
prunus_persica	Prupe.3G184200_v2.0.a1 Prupe.5G163700_v2.0.a1 Prupe.5G163800_v2.0.a1 Prupe.5G164000_v2.0.a1 Prupe.5G164100_v2.0.a1
pyrus_communis	pycom06g14730 pycom14g14150
rosa_chinensis	RchiOBHm_Chr1g0314001 RchiOBHm_Chr4g0420441 RchiOBHm_Chr5g0028981 RchiOBHm_Chr7g0192271 RchiOBHm_Chr7g0192301 RchiOBHm_Chr7g0233491
rosa_laevigata	RLG00000004378 RLG00000004380 RLG00000007763 RLG00000033133
rosa_multiflora	Rmu_sc0001559.1_g000001 Rmu_sc0009042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00050910 Rroxscaffold_3G00263130
rosa_rugosa	Rorug03G0295500 Rorug05G0112200 Rorug07G0000300 Rorug07G0000400
rosa_samantha	Rh4AG225500 Rh5AG204200 Rh5CG223300 Rh7AG124500 Rh7AG124700 Rh7BG126300 Rh7BG126500 Rh7DG128100 Rh7DG128300
rosa_wichuraiana	Rw0G008520 Rw4G011870 Rw5G018510 Rw7G010670 Rw7G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	558
AccII	CGCG	1 cut(s)	460
AciI	CCGC	4 cut(s)	381, 458, 504, 683
AclWI	GGATC	1 cut(s)	339
AcoI	YGGCCR	1 cut(s)	759
AfaI	GTAC	2 cut(s)	519, 722
AfiI	CCNNNNNNNGG	2 cut(s)	558, 647
AflIII	ACRYGT	1 cut(s)	369
AgsI	TTSAA	6 cut(s)	19, 110, 190, 236, 308, 352
AjnI	CCWGG	2 cut(s)	621, 667
AloI	GAACNNNNNNTCC	2 cut(s)	539, 571
AluBI	AGCT	5 cut(s)	404, 427, 476, 695, 812
AluI	AGCT	5 cut(s)	404, 427, 476, 695, 812
Alw21I	GWGCWC	1 cut(s)	11
AlwI	GGATC	1 cut(s)	339
AoxI	GGCC	3 cut(s)	619, 675, 759
ApeKI	GCWGC	1 cut(s)	473
ArsI	GACNNNNNNTTYG	2 cut(s)	617, 649
AspS9I	GGNCC	2 cut(s)	547, 619
AsuC2I	CCSGG	1 cut(s)	584
AvaII	GGWCC	1 cut(s)	547
BarI	GAAGNNNNNNTAC	2 cut(s)	376, 408
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	485
BccI	CCATC	2 cut(s)	147, 206
BciT130I	CCWGG	2 cut(s)	623, 669
BclI	TGATCA	1 cut(s)	223
BcnI	CCSGG	1 cut(s)	584
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	362
BisI	GCNGC	1 cut(s)	474
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	475
Bme1390I	CCNGG	3 cut(s)	584, 623, 669
Bme18I	GGWCC	1 cut(s)	547
BmgT120I	GGNCC	2 cut(s)	547, 619
BmiI	GGNNCC	2 cut(s)	548, 549
BmrFI	CCNGG	3 cut(s)	584, 623, 669
BmrI	ACTGGG	1 cut(s)	494
BmsI	GCATC	2 cut(s)	98, 754
BmuI	ACTGGG	1 cut(s)	494
BplI	GAGNNNNNCTC	2 cut(s)	587, 619
BpmI	CTGGAG	1 cut(s)	711
Bpu1102I	GCTNAGC	1 cut(s)	5
BpuEI	CTTGAG	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	584
BsaJI	CCNNGG	1 cut(s)	668
BsaXI	ACNNNNNCTCC	2 cut(s)	646, 676
Bsc4I	CCNNNNNNNGG	2 cut(s)	558, 647
Bse1I	ACTGG	4 cut(s)	49, 489, 728, 737
Bse3DI	GCAATG	1 cut(s)	177
BseBI	CCWGG	2 cut(s)	623, 669
BseDI	CCNNGG	1 cut(s)	668
BseLI	CCNNNNNNNGG	2 cut(s)	558, 647
BseMI	GCAATG	1 cut(s)	177
BseNI	ACTGG	4 cut(s)	49, 489, 728, 737
BseRI	GAGGAG	3 cut(s)	435, 587, 804
BseX3I	CGGCCG	1 cut(s)	759
BseXI	GCAGC	1 cut(s)	485
Bsh1236I	CGCG	1 cut(s)	460
Bsh1285I	CGRYCG	1 cut(s)	762
BshFI	GGCC	3 cut(s)	621, 677, 761
BsiEI	CGRYCG	1 cut(s)	762
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	584
BslFI	GGGAC	4 cut(s)	560, 575, 623, 812
BslI	CCNNNNNNNGG	2 cut(s)	558, 647
BsmFI	GGGAC	4 cut(s)	560, 575, 623, 812
BsnI	GGCC	3 cut(s)	621, 677, 761
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	223, 331
Bsp1720I	GCTNAGC	1 cut(s)	5
BspACI	CCGC	4 cut(s)	381, 458, 504, 683
BspANI	GGCC	3 cut(s)	621, 677, 761
BspFNI	CGCG	1 cut(s)	460
BspLI	GGNNCC	2 cut(s)	548, 549
BspPI	GGATC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	177
BsrI	ACTGG	4 cut(s)	49, 489, 728, 737
BssECI	CCNNGG	1 cut(s)	668
BssMI	GATC	2 cut(s)	223, 331
Bst2UI	CCWGG	2 cut(s)	623, 669
Bst4CI	ACNGT	2 cut(s)	30, 799
Bst6I	CTCTTC	2 cut(s)	652, 822
BstC8I	GCNNGC	1 cut(s)	675
BstDEI	CTNAG	3 cut(s)	5, 167, 769
BstFNI	CGCG	1 cut(s)	460
BstKTI	GATC	2 cut(s)	226, 334
BstMBI	GATC	2 cut(s)	223, 331
BstMCI	CGRYCG	1 cut(s)	762
BstNI	CCWGG	2 cut(s)	623, 669
BstNSI	RCATGY	1 cut(s)	373
BstSCI	CCNGG	3 cut(s)	582, 621, 667
BstSFI	CTRYAG	1 cut(s)	362
BstUI	CGCG	1 cut(s)	460
BstV1I	GCAGC	1 cut(s)	485
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BstZI	CGGCCG	1 cut(s)	759
BsuRI	GGCC	3 cut(s)	621, 677, 761
BtsIMutI	CAGTG	2 cut(s)	482, 795
Cac8I	GCNNGC	1 cut(s)	675
Cfr13I	GGNCC	2 cut(s)	547, 619
Csp6I	GTAC	2 cut(s)	518, 721
CviAII	CATG	2 cut(s)	370, 775
CviQI	GTAC	2 cut(s)	518, 721
DdeI	CTNAG	3 cut(s)	5, 167, 769
DpnI	GATC	2 cut(s)	225, 333
DpnII	GATC	2 cut(s)	223, 331
EaeI	YGGCCR	1 cut(s)	759
EagI	CGGCCG	1 cut(s)	759
Eam1104I	CTCTTC	2 cut(s)	652, 822
EarI	CTCTTC	2 cut(s)	652, 822
EciI	GGCGGA	1 cut(s)	396
EclXI	CGGCCG	1 cut(s)	759
Eco147I	AGGCCT	1 cut(s)	677
Eco47I	GGWCC	1 cut(s)	547
Eco52I	CGGCCG	1 cut(s)	759
EcoO109I	RGGNCCY	1 cut(s)	547
EcoRII	CCWGG	2 cut(s)	621, 667
EcoT22I	ATGCAT	1 cut(s)	532
FaeI	CATG	2 cut(s)	373, 778
FalI	AAGNNNNNCTT	2 cut(s)	801, 833
FaqI	GGGAC	4 cut(s)	560, 575, 623, 812
FatI	CATG	2 cut(s)	369, 774
FauI	CCCGC	1 cut(s)	511
FbaI	TGATCA	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	474
Fsp4HI	GCNGC	1 cut(s)	474
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	1 cut(s)	474
GsuI	CTGGAG	1 cut(s)	711
HaeIII	GGCC	3 cut(s)	621, 677, 761
HapII	CCGG	1 cut(s)	584
Hin1II	CATG	2 cut(s)	373, 778
HinfI	GANTC	2 cut(s)	174, 792
HpaII	CCGG	1 cut(s)	584
Hpy188III	TCNNGA	3 cut(s)	93, 115, 341
HpyAV	CCTTC	3 cut(s)	25, 90, 254
HpyCH4III	ACNGT	2 cut(s)	30, 799
HpyCH4V	TGCA	3 cut(s)	182, 530, 710
HpyF3I	CTNAG	3 cut(s)	5, 167, 769
Hsp92II	CATG	2 cut(s)	373, 778
KflI	GGGWCCC	1 cut(s)	547
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	223, 331
LmnI	GCTCC	3 cut(s)	586, 692, 817
Lsp1109I	GCAGC	1 cut(s)	485
LweI	GCATC	2 cut(s)	98, 754
MaeI	CTAG	1 cut(s)	33
MaeIII	GTNAC	3 cut(s)	40, 478, 491
MalI	GATC	2 cut(s)	225, 333
MboI	GATC	2 cut(s)	223, 331
MboII	GAAGA	4 cut(s)	248, 669, 707, 809
MfeI	CAATTG	1 cut(s)	606
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	4 cut(s)	73, 206, 606, 632
MmeI	TCCRAC	1 cut(s)	464
Mph1103I	ATGCAT	1 cut(s)	532
MseI	TTAA	3 cut(s)	324, 615, 847
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	1 cut(s)	584
MspR9I	CCNGG	3 cut(s)	584, 623, 669
MunI	CAATTG	1 cut(s)	606
MvaI	CCWGG	2 cut(s)	623, 669
MvnI	CGCG	1 cut(s)	460
NciI	CCSGG	1 cut(s)	584
NdeII	GATC	2 cut(s)	223, 331
NlaIII	CATG	2 cut(s)	373, 778
NlaIV	GGNNCC	2 cut(s)	548, 549
NsiI	ATGCAT	1 cut(s)	532
NspI	RCATGY	1 cut(s)	373
PceI	AGGCCT	1 cut(s)	677
PciI	ACATGT	1 cut(s)	369
PfeI	GAWTC	2 cut(s)	174, 792
PflMI	CCANNNNNTGG	1 cut(s)	558
PfoI	TCCNGGA	1 cut(s)	582
PkrI	GCNGC	1 cut(s)	475
PpuMI	RGGWCCY	1 cut(s)	547
PscI	ACATGT	1 cut(s)	369
Psp5II	RGGWCCY	1 cut(s)	547
Psp6I	CCWGG	2 cut(s)	621, 667
PspGI	CCWGG	2 cut(s)	621, 667
PspN4I	GGNNCC	2 cut(s)	548, 549
PspPI	GGNCC	2 cut(s)	547, 619
PspPPI	RGGWCCY	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	2 cut(s)	519, 722
RsaNI	GTAC	2 cut(s)	518, 721
SaqAI	TTAA	3 cut(s)	324, 615, 847
SatI	GCNGC	1 cut(s)	474
Sau3AI	GATC	2 cut(s)	223, 331
Sau96I	GGNCC	2 cut(s)	547, 619
ScrFI	CCNGG	3 cut(s)	584, 623, 669
SduI	GDGCHC	1 cut(s)	11
SfaNI	GCATC	2 cut(s)	98, 754
SfcI	CTRYAG	1 cut(s)	362
SinI	GGWCC	1 cut(s)	547
SmlI	CTYRAG	1 cut(s)	339
SmoI	CTYRAG	1 cut(s)	339
Sse9I	AATT	4 cut(s)	73, 206, 606, 632
SseBI	AGGCCT	1 cut(s)	677
SsiI	CCGC	4 cut(s)	381, 458, 504, 683
SspMI	CTAG	1 cut(s)	33
StuI	AGGCCT	1 cut(s)	677
StyD4I	CCNGG	3 cut(s)	582, 621, 667
TaaI	ACNGT	2 cut(s)	30, 799
TasI	AATT	4 cut(s)	73, 206, 606, 632
TatI	WGTACW	1 cut(s)	720
TfiI	GAWTC	2 cut(s)	174, 792
Tru1I	TTAA	3 cut(s)	324, 615, 847
Tru9I	TTAA	3 cut(s)	324, 615, 847
TscAI	CASTG	2 cut(s)	489, 802
TseI	GCWGC	1 cut(s)	473
TspDTI	ATGAA	2 cut(s)	166, 809
TspRI	CASTG	2 cut(s)	489, 802
Van91I	CCANNNNNTGG	1 cut(s)	558
VpaK11BI	GGWCC	1 cut(s)	547
XceI	RCATGY	1 cut(s)	373
XspI	CTAG	1 cut(s)	33
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.