FvH4_5g07331

Oxygen-independent coproporphyrinogen-III oxidase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0009349
Physical Location & Seq
Reverse (-)
4290099 .. 4291958
1860 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g07331.t1

Sequence Viewer

Length: 1404 bp
ATGCTAAAGTCAACTTTCACACCCTTATTCTCAACCATTCCCGCCAAACCAAGACTCCCAATACCTTTGCTCAGAGCCTTCACACAAAGCCCACCACCTGTTCGACAAAATGCCTTACTCGCCGTTCACCCACCTCCTACTTCCGCCTACGTCCACCTCCCCTTCTGCCGCAAACGCTGCCACTACTGTGACTTCACCATCATCGCTCTCGGCTCTTCTTCTTCTTCCTCAAACCAACCCCAAGGCAACGACCCGCGAATGGTGAACTATGTCCAGTTACTCTGCCGTGAAATTAATGCAATAAAAGCAGAACATAAAACCAACCCGCCTCTCGAAACTGTCTTTTTCGGAGGCGGCACGCCGTCTCTTGTGCCACCAAAGCTTGTGTCTTCCATTTTGGAGACGCTGAGGTTGAAATTCGGGCTGAGCTCGGATGCTGAGATATCTATGGAAATGGACCCCGGGACTTTCGATGGTGAAAAAATGAAGCGAATGATGGAGTTGGGTGTGAATAGAGTGTCATTGGGAGTTCAGGCGTTTCAACAGGAGCTGTTGAAGTCTTGTGGGAGAGCTCATGGTATTAAGGAGGTTTATGAAGCAATTGAGATTGTTGGGTCATGTGGGGTTGAGAATTGGAGTATGGATCTTATCTCTTCTCTTCCTCATCAGACCCCGGAAATGTGGGAAGAGAGCTTGAGGCTAACAGTGGAAGCTCGTCCTCCCCATGTGTCGGTTTACGATTTGCAAGTGGAACAAGGCACCAAATTCGGAAGATTGTATACGCCAGGGGAGTTCCCGTTGCCTTCTGAAACAAGGTCAGCTGAGTTCTATAGAACGGCATCTCGGACGCTTTGTGATGCAGGTTACGAGCACTATGAGATTAGTAGCTATGGCAAGAGTGGGTTTCAGTGCAAGCATAATCTTACTTACTGGAAGAACAAGCCTTTCTATGGTTTTGGCCTCGGCGCTGCTAGCCATGTTGGTCGTGTGAGGTTTTCGAGACCCAAAATGATGAAAGAGTACAGTGGTTATGTGGAGAATCTGGAAAATGGGTTGGTGGAATGTGGTGGGAGGGATCTCATTGATGCTAAGGATGTGGCCATGGATGTTGTTATGCTGTCTCTAAGAACTTCAAGAGGTCTGGATTTGAAGTGTTTTGGAGAAGCATATGGTAGCTCCCTTGTTGGTTCTCTCTGCGAGGTTTATAAACCTTATGTTGAAAGTGGGCACGTAGTTTTCTTAGATGAACAGAGAAGAGCCATGACTGCGGATGAACTGAACGCCTTGACACTAAACGAAGAAGAGATCGAGCAAATAATTGCCTACATTCGTCTAAGTGATCCAGATGGTTTCCTTTTATCGAATGAATTGATATCCCTTGCGTTTGCAGTTGTATCTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HemN_C Radical_SAM

Protein Analysis

468

Amino Acids

51.99

Weight (kDa)

5.94

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Radical_SAM PF04055 50 - 234 2.1e-26 Radical SAM superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1206
Acc36I ACCTGC 1 cut(s) 851
AccB1I GGYRCC 1 cut(s) 758
AccI GTMKAC 1 cut(s) 779
AccII CGCG 1 cut(s) 256
AciI CCGC 7 cut(s) 42, 144, 169, 254, 326, 354, 1268
AclWI GGATC 3 cut(s) 651, 1083, 1334
AcoI YGGCCR 1 cut(s) 1098
AcsI RAATTY 2 cut(s) 416, 764
AfaI GTAC 1 cut(s) 1022
AfiI CCNNNNNNNGG 3 cut(s) 259, 730, 950
AgsI TTSAA 6 cut(s) 415, 542, 556, 1134, 1150, 1220
AjnI CCWGG 1 cut(s) 784
AleI CACNNNNGTG 1 cut(s) 186
AluBI AGCT 9 cut(s) 382, 429, 550, 572, 693, 713, 821, 888, 1176
AluI AGCT 9 cut(s) 382, 429, 550, 572, 693, 713, 821, 888, 1176
Alw21I GWGCWC 3 cut(s) 431, 574, 873
Alw26I GTCTC 4 cut(s) 369, 395, 994, 1125
AlwI GGATC 3 cut(s) 651, 1083, 1334
AlwNI CAGNNNCTG 1 cut(s) 550
Ama87I CYCGRG 1 cut(s) 461
AoxI GGCC 2 cut(s) 958, 1098
ApeKI GCWGC 2 cut(s) 177, 968
ApoI RAATTY 2 cut(s) 416, 764
ArsI GACNNNNNNTTYG 2 cut(s) 371, 403
AseI ATTAAT 1 cut(s) 294
AspLEI GCGC 1 cut(s) 968
AspS9I GGNCC 1 cut(s) 457
AsuC2I CCSGG 3 cut(s) 462, 463, 674
AsuHPI GGTGA 4 cut(s) 119, 187, 274, 488
AsuNHI GCTAGC 1 cut(s) 971
AvaI CYCGRG 1 cut(s) 461
AvaII GGWCC 1 cut(s) 457
BaeGI GKGCMC 1 cut(s) 1230
BalI TGGCCA 1 cut(s) 1100
BanI GGYRCC 1 cut(s) 758
BanII GRGCYC 2 cut(s) 431, 574
BarI GAAGNNNNNNTAC 2 cut(s) 763, 795
BbsI GAAGAC 1 cut(s) 381
Bbv12I GWGCWC 3 cut(s) 431, 574, 873
BbvCI CCTCAGC 1 cut(s) 407
BbvI GCAGC 2 cut(s) 164, 955
BccI CCATC 4 cut(s) 206, 467, 490, 1340
BceAI ACGGC 4 cut(s) 107, 270, 346, 852
BcgI CGANNNNNNTGC 2 cut(s) 748, 782
BciT130I CCWGG 1 cut(s) 786
BcnI CCSGG 3 cut(s) 462, 463, 674
BcoDI GTCTC 4 cut(s) 369, 395, 994, 1125
BfaI CTAG 1 cut(s) 972
BfmI CTRYAG 1 cut(s) 829
BfoI RGCGCY 1 cut(s) 969
BfuAI ACCTGC 1 cut(s) 851
BisI GCNGC 4 cut(s) 169, 178, 355, 969
BlpI GCTNAGC 1 cut(s) 425
BlsI GCNGC 4 cut(s) 170, 179, 356, 970
Bme1390I CCNGG 4 cut(s) 462, 463, 674, 786
Bme18I GGWCC 1 cut(s) 457
BmeT110I CYCGRG 1 cut(s) 461
BmgT120I GGNCC 1 cut(s) 457
BmiI GGNNCC 2 cut(s) 459, 760
BmrFI CCNGG 4 cut(s) 462, 463, 674, 786
BmsI GCATC 4 cut(s) 424, 847, 848, 1075
BmtI GCTAGC 1 cut(s) 975
BpiI GAAGAC 1 cut(s) 381
Bpu10I CCTNAGC 2 cut(s) 407, 1089
Bpu1102I GCTNAGC 1 cut(s) 425
BpuEI CTTGAG 1 cut(s) 715
BpuMI CCSGG 3 cut(s) 462, 463, 674
BsaAI YACGTR 1 cut(s) 1231
BsaI GGTCTC 1 cut(s) 994
BsaJI CCNNGG 7 cut(s) 241, 460, 461, 672, 785, 961, 1101
BsaXI ACNNNNNCTCC 4 cut(s) 39, 69, 782, 812
Bsc4I CCNNNNNNNGG 3 cut(s) 259, 730, 950
Bse1I ACTGG 2 cut(s) 274, 935
BseBI CCWGG 1 cut(s) 786
BseDI CCNNGG 7 cut(s) 241, 460, 461, 672, 785, 961, 1101
BseGI GGATG 4 cut(s) 439, 1099, 1111, 1276
BseLI CCNNNNNNNGG 3 cut(s) 259, 730, 950
BseMII CTCAG 5 cut(s) 85, 398, 416, 429, 813
BseNI ACTGG 2 cut(s) 274, 935
BseSI GKGCMC 1 cut(s) 1230
BseXI GCAGC 2 cut(s) 164, 955
Bsh1236I CGCG 1 cut(s) 256
BshFI GGCC 2 cut(s) 960, 1100
BshNI GGYRCC 1 cut(s) 758
BsiHKAI GWGCWC 3 cut(s) 431, 574, 873
BsiHKCI CYCGRG 1 cut(s) 461
BsiSI CCGG 2 cut(s) 462, 674
BslFI GGGAC 1 cut(s) 478
BslI CCNNNNNNNGG 3 cut(s) 259, 730, 950
BsmAI GTCTC 4 cut(s) 369, 395, 994, 1125
BsmBI CGTCTC 2 cut(s) 369, 395
BsmFI GGGAC 1 cut(s) 478
BsnI GGCC 2 cut(s) 960, 1100
Bso31I GGTCTC 1 cut(s) 994
BsoBI CYCGRG 1 cut(s) 461
Bsp1286I GDGCHC 4 cut(s) 431, 574, 873, 1230
Bsp143I GATC 4 cut(s) 643, 1075, 1305, 1339
Bsp1720I GCTNAGC 1 cut(s) 425
Bsp19I CCATGG 1 cut(s) 1101
BspACI CCGC 7 cut(s) 42, 144, 169, 254, 326, 354, 1268
BspANI GGCC 2 cut(s) 960, 1100
BspCNI CTCAG 5 cut(s) 84, 399, 417, 430, 814
BspFNI CGCG 1 cut(s) 256
BspLI GGNNCC 2 cut(s) 459, 760
BspMI ACCTGC 1 cut(s) 851
BspOI GCTAGC 1 cut(s) 975
BspPI GGATC 3 cut(s) 651, 1083, 1334
BspQI GCTCTTC 2 cut(s) 220, 1249
BspT107I GGYRCC 1 cut(s) 758
BspTNI GGTCTC 1 cut(s) 994
BsrI ACTGG 2 cut(s) 274, 935
BssECI CCNNGG 7 cut(s) 241, 460, 461, 672, 785, 961, 1101
BssMI GATC 4 cut(s) 643, 1075, 1305, 1339
BssNAI GTATAC 1 cut(s) 780
BssT1I CCWWGG 2 cut(s) 241, 1101
Bst1107I GTATAC 1 cut(s) 780
Bst2UI CCWGG 1 cut(s) 786
Bst4CI ACNGT 4 cut(s) 188, 340, 706, 1025
Bst6I CTCTTC 6 cut(s) 220, 658, 663, 681, 1249, 1296
BstAPI GCANNNNNTGC 1 cut(s) 177
BstBAI YACGTR 1 cut(s) 1231
BstC8I GCNNGC 3 cut(s) 359, 914, 973
BstDEI CTNAG 9 cut(s) 71, 407, 425, 438, 822, 1089, 1124, 1240, 1334
BstDSI CCRYGG 1 cut(s) 1101
BstF5I GGATG 4 cut(s) 439, 1099, 1111, 1276
BstFNI CGCG 1 cut(s) 256
BstH2I RGCGCY 1 cut(s) 969
BstHHI GCGC 1 cut(s) 968
BstKTI GATC 4 cut(s) 646, 1078, 1308, 1342
BstMAI GTCTC 4 cut(s) 369, 395, 994, 1125
BstMBI GATC 4 cut(s) 643, 1075, 1305, 1339
BstMWI GCNNNNNNNGC 7 cut(s) 119, 174, 177, 305, 379, 972, 1265
BstNI CCWGG 1 cut(s) 786
BstSCI CCNGG 4 cut(s) 460, 461, 672, 784
BstSFI CTRYAG 1 cut(s) 829
BstSLI GKGCMC 1 cut(s) 1230
BstUI CGCG 1 cut(s) 256
BstV1I GCAGC 2 cut(s) 164, 955
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 2 cut(s) 643, 1075
BstYI RGATCY 2 cut(s) 643, 1075
BstZ17I GTATAC 1 cut(s) 780
BsuRI GGCC 2 cut(s) 960, 1100
BtgI CCRYGG 1 cut(s) 1101
BtgZI GCGATG 1 cut(s) 187
BtsCI GGATG 4 cut(s) 439, 1099, 1111, 1276
BtsIMutI CAGTG 3 cut(s) 711, 914, 1030
BveI ACCTGC 1 cut(s) 851
Cac8I GCNNGC 3 cut(s) 359, 914, 973
CaiI CAGNNNCTG 1 cut(s) 550
CfoI GCGC 1 cut(s) 968
Cfr13I GGNCC 1 cut(s) 457
Cfr9I CCCGGG 1 cut(s) 461
CseI GACGC 2 cut(s) 412, 856
Csp6I GTAC 1 cut(s) 1021
CviAII CATG 6 cut(s) 575, 618, 725, 977, 1102, 1261
CviQI GTAC 1 cut(s) 1021
DdeI CTNAG 9 cut(s) 71, 407, 425, 438, 822, 1089, 1124, 1240, 1334
DpnI GATC 4 cut(s) 645, 1077, 1307, 1341
DpnII GATC 4 cut(s) 643, 1075, 1305, 1339
EaeI YGGCCR 1 cut(s) 1098
Eam1104I CTCTTC 6 cut(s) 220, 658, 663, 681, 1249, 1296
EarI CTCTTC 6 cut(s) 220, 658, 663, 681, 1249, 1296
EciI GGCGGA 1 cut(s) 133
Ecl136II GAGCTC 2 cut(s) 429, 572
Eco130I CCWWGG 2 cut(s) 241, 1101
Eco24I GRGCYC 2 cut(s) 431, 574
Eco31I GGTCTC 1 cut(s) 994
Eco32I GATATC 2 cut(s) 444, 1374
Eco47I GGWCC 1 cut(s) 457
Eco53kI GAGCTC 2 cut(s) 429, 572
Eco88I CYCGRG 1 cut(s) 461
EcoICRI GAGCTC 2 cut(s) 429, 572
EcoRII CCWGG 1 cut(s) 784
EcoRV GATATC 2 cut(s) 444, 1374
EcoT14I CCWWGG 2 cut(s) 241, 1101
EcoT38I GRGCYC 2 cut(s) 431, 574
ErhI CCWWGG 2 cut(s) 241, 1101
Esp3I CGTCTC 2 cut(s) 369, 395
FaeI CATG 6 cut(s) 578, 621, 728, 980, 1105, 1264
FaqI GGGAC 1 cut(s) 478
FatI CATG 6 cut(s) 574, 617, 724, 976, 1101, 1260
FauI CCCGC 3 cut(s) 49, 261, 333
FauNDI CATATG 1 cut(s) 1168
FblI GTMKAC 1 cut(s) 779
Fnu4HI GCNGC 4 cut(s) 169, 178, 355, 969
FokI GGATG 4 cut(s) 446, 1106, 1118, 1283
FriOI GRGCYC 2 cut(s) 431, 574
Fsp4HI GCNGC 4 cut(s) 169, 178, 355, 969
FspBI CTAG 1 cut(s) 972
GlaI GCGC 1 cut(s) 967
GluI GCNGC 4 cut(s) 169, 178, 355, 969
HaeII RGCGCY 1 cut(s) 969
HaeIII GGCC 2 cut(s) 960, 1100
HapII CCGG 2 cut(s) 462, 674
HgaI GACGC 2 cut(s) 412, 856
HhaI GCGC 1 cut(s) 968
Hin1II CATG 6 cut(s) 578, 621, 728, 980, 1105, 1264
Hin6I GCGC 1 cut(s) 966
HinP1I GCGC 1 cut(s) 966
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 2 cut(s) 54, 1039
HpaII CCGG 2 cut(s) 462, 674
HphI GGTGA 4 cut(s) 119, 187, 274, 488
Hpy166II GTNNAC 6 cut(s) 12, 127, 154, 265, 736, 780
Hpy188I TCNGA 7 cut(s) 74, 350, 433, 669, 770, 808, 846
Hpy188III TCNNGA 6 cut(s) 332, 999, 1043, 1134, 1142, 1343
Hpy8I GTNNAC 6 cut(s) 12, 127, 154, 265, 736, 780
HpyAV CCTTC 3 cut(s) 88, 172, 813
HpyCH4III ACNGT 4 cut(s) 188, 340, 706, 1025
HpyCH4IV ACGT 2 cut(s) 150, 1230
HpyCH4V TGCA 5 cut(s) 299, 745, 860, 912, 1388
HpyF10VI GCNNNNNNNGC 7 cut(s) 119, 174, 177, 305, 379, 972, 1265
HpyF3I CTNAG 9 cut(s) 71, 407, 425, 438, 822, 1089, 1124, 1240, 1334
HpySE526I ACGT 2 cut(s) 150, 1230
Hsp92II CATG 6 cut(s) 578, 621, 728, 980, 1105, 1264
HspAI GCGC 1 cut(s) 966
Kzo9I GATC 4 cut(s) 643, 1075, 1305, 1339
LguI GCTCTTC 2 cut(s) 220, 1249
LmnI GCTCC 2 cut(s) 547, 1181
Lsp1109I GCAGC 2 cut(s) 164, 955
LweI GCATC 4 cut(s) 424, 847, 848, 1075
MaeI CTAG 1 cut(s) 972
MaeII ACGT 2 cut(s) 150, 1230
MaeIII GTNAC 3 cut(s) 188, 276, 863
MalI GATC 4 cut(s) 645, 1077, 1307, 1341
MboI GATC 4 cut(s) 643, 1075, 1305, 1339
MfeI CAATTG 1 cut(s) 600
MflI RGATCY 2 cut(s) 643, 1075
MhlI GDGCHC 4 cut(s) 431, 574, 873, 1230
MlsI TGGCCA 1 cut(s) 1100
MluCI AATT 7 cut(s) 291, 416, 600, 631, 764, 1317, 1367
MluNI TGGCCA 1 cut(s) 1100
MlyI GAGTC 1 cut(s) 48
Mox20I TGGCCA 1 cut(s) 1100
MscI TGGCCA 1 cut(s) 1100
MseI TTAA 2 cut(s) 294, 582
MslI CAYNNNNRTG 1 cut(s) 186
Msp20I TGGCCA 1 cut(s) 1100
MspA1I CMGCKG 1 cut(s) 821
MspI CCGG 2 cut(s) 462, 674
MspR9I CCNGG 4 cut(s) 462, 463, 674, 786
MunI CAATTG 1 cut(s) 600
MvaI CCWGG 1 cut(s) 786
MvnI CGCG 1 cut(s) 256
MwoI GCNNNNNNNGC 7 cut(s) 119, 174, 177, 305, 379, 972, 1265
NciI CCSGG 3 cut(s) 462, 463, 674
NcoI CCATGG 1 cut(s) 1101
NdeI CATATG 1 cut(s) 1168
NdeII GATC 4 cut(s) 643, 1075, 1305, 1339
NheI GCTAGC 1 cut(s) 971
NlaIII CATG 6 cut(s) 578, 621, 728, 980, 1105, 1264
NlaIV GGNNCC 2 cut(s) 459, 760
NmeAIII GCCGAG 2 cut(s) 189, 942
NmuCI GTSAC 1 cut(s) 188
OliI CACNNNNGTG 1 cut(s) 186
PciSI GCTCTTC 2 cut(s) 220, 1249
PfeI GAWTC 1 cut(s) 1039
PkrI GCNGC 4 cut(s) 170, 179, 356, 970
PleI GAGTC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 48
Ppu21I YACGTR 1 cut(s) 1231
PshBI ATTAAT 1 cut(s) 294
PsiI TTATAA 1 cut(s) 1206
Psp124BI GAGCTC 2 cut(s) 431, 574
Psp6I CCWGG 1 cut(s) 784
PspGI CCWGG 1 cut(s) 784
PspN4I GGNNCC 2 cut(s) 459, 760
PspPI GGNCC 1 cut(s) 457
PstNI CAGNNNCTG 1 cut(s) 550
PsuI RGATCY 2 cut(s) 643, 1075
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 1 cut(s) 1022
RsaNI GTAC 1 cut(s) 1021
RseI CAYNNNNRTG 1 cut(s) 186
SacI GAGCTC 2 cut(s) 431, 574
SapI GCTCTTC 2 cut(s) 220, 1249
SaqAI TTAA 2 cut(s) 294, 582
SatI GCNGC 4 cut(s) 169, 178, 355, 969
Sau3AI GATC 4 cut(s) 643, 1075, 1305, 1339
Sau96I GGNCC 1 cut(s) 457
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 4 cut(s) 462, 463, 674, 786
SduI GDGCHC 4 cut(s) 431, 574, 873, 1230
SfaNI GCATC 4 cut(s) 424, 847, 848, 1075
SfcI CTRYAG 1 cut(s) 829
SinI GGWCC 1 cut(s) 457
SmaI CCCGGG 1 cut(s) 463
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 694
SmoI CTYRAG 1 cut(s) 694
Sse9I AATT 7 cut(s) 291, 416, 600, 631, 764, 1317, 1367
SsiI CCGC 7 cut(s) 42, 144, 169, 254, 326, 354, 1268
SspMI CTAG 1 cut(s) 972
SstI GAGCTC 2 cut(s) 431, 574
StyD4I CCNGG 4 cut(s) 460, 461, 672, 784
StyI CCWWGG 2 cut(s) 241, 1101
TaaI ACNGT 4 cut(s) 188, 340, 706, 1025
TaiI ACGT 2 cut(s) 153, 1233
TaqI TCGA 6 cut(s) 103, 333, 471, 998, 1308, 1361
TasI AATT 7 cut(s) 291, 416, 600, 631, 764, 1317, 1367
TatI WGTACW 1 cut(s) 1020
TauI GCSGC 2 cut(s) 171, 357
TfiI GAWTC 1 cut(s) 1039
Tru1I TTAA 2 cut(s) 294, 582
Tru9I TTAA 2 cut(s) 294, 582
TscAI CASTG 3 cut(s) 711, 914, 1030
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 2 cut(s) 177, 968
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 6 cut(s) 500, 609, 1028, 1260, 1287, 1380
TspGWI ACGGA 1 cut(s) 1389
TspMI CCCGGG 1 cut(s) 461
TspRI CASTG 3 cut(s) 711, 914, 1030
VpaK11BI GGWCC 1 cut(s) 457
VspI ATTAAT 1 cut(s) 294
XapI RAATTY 2 cut(s) 416, 764
XmaI CCCGGG 1 cut(s) 461
XmiI GTMKAC 1 cut(s) 779
XspI CTAG 1 cut(s) 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.