Rh7CG121700

Oxygen-independent coproporphyrinogen-III oxidase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0009349
Physical Location & Seq
Forward (+)
9395000 .. 9396488
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG121700.1

Sequence Viewer

Length: 1413 bp
ATGCTTAAGTCAACGTTCACACCCTTTTTCTCAACCATTCCCGCCAAACCAAGATTCCCAAAACCATTACCTTCCACCATTCTCAGAGCCTTAACACAAAGCGCACCACCTGTTCGACAAAATGCCTCACTCACCATTTTCCCACCGCCTACTTCCGCCTACGTCCACCTCCCCTTCTGCCGGAAACGCTGCCACTACTGTGACTTCACCATCATCGCGCTCGGCTCTTCTTCTTCTTCTTCCTCTTCAAACCATCCCGAAGACGACCCACGAATGGTGAACTATGTCCAGTTACTCTGCCGAGAAATCAATGCCACACAAGTTAAGACCAACCCACCTCTGGAAACGGTCTTTTTCGGAGGCGGCACGCCTTCTCTTGTGCCACCAAAGCTTGTTTCTTCCATTTTGGAGACATTGAGGTTGAAATTCGGGCTGAGCTTGGATGCTGAGATATCTATGGAAATGGACCCCGGGACTTTTGATGGTGAGAAACTGAAGGGAATGATGGAGTTGGGTGTGAATAGGGTGTCATTGGGAGTTCAGGCATTTCAAGAAGAGTTGTTGAAGTCTTGTGGGAGAGCACATGGTCTTACGGAGGTTTATGAAGCTATTGAAATTGTTGGGTCATGTGGAGTTGAGAATTGGAGTATGGATCTAATCTCTTCTCTGCCTCACCAGACTCCAGAAATGTGGGAAGAGAGTTTGAGGCTAACAGTTGAAGCTCGTCCTCCTCATGTATCAGTATACGATTTACAAGTGGAGCAAGGCACCAAATTCGGAAGATTGTACACACCAGGTGAGTTCCCATTGCCTTCTGAAACACGGTCAGCTGAATTCTATAGAATGGCATCTCGGACGCTTTCTGATGCGGGTTATGAGCACTATGAAATTAGCAGCTATGGCAAGAAGGGATATCAGTGCAAGCACAATCTTACTTACTGGAAGAACAAGCCTTTCTATGGTTTTGGCCTTGGCTCTGCTAGCCATGTTGGTGGTGTGAGGTTTTCGAGACCAAAAATGATGAAAGAGTACAGTGGTTATGTGGAGAACTTGGAAAATGGGTTGGTGGATTGTGGTGGGAGTAAATATATTGATGTCAAGGACATGGCCATGGACGTTGTTATGCTCTCTCTTAGAACTTCAAGAGGTCTGGATTTGAAGTCTTTTGGAGAAGCGTATGGTAGCTCCCTTGCTGTCTCTCTTTGCGAGGTTTATAAACCTTATGTTGAAAGTGGGCATGTGGTTTTCTTAGATGAGCAGAGAAGGGCCATGACTGTAGATGAGTTGAACTCCTTCAAACTAAACGAAGAAGAGATAGAAAAAAGTCTTGCATATATCCGTCTAAGTGATCCGGATGGTTTCCTTTTATCGAATGAATTGATATCACTTGCATTTGCAGTTGTATCTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HemN_C Radical_SAM

Protein Analysis

470

Amino Acids

52.31

Weight (kDa)

5.79

Isoelectric Point (pI)

43.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Radical_SAM PF04055 54 - 237 1.3e-23 Radical SAM superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1215
AccB1I GGYRCC 1 cut(s) 767
AccI GTMKAC 1 cut(s) 744
AccII CGCG 1 cut(s) 218
AccIII TCCGGA 1 cut(s) 1351
AciI CCGC 5 cut(s) 42, 146, 156, 363, 869
AclI AACGTT 1 cut(s) 14
AclWI GGATC 2 cut(s) 660, 1343
AcoI YGGCCR 1 cut(s) 1107
AcsI RAATTY 3 cut(s) 425, 773, 833
AcuI CTGAAG 1 cut(s) 515
AdeI CACNNNGTG 1 cut(s) 797
AfaI GTAC 2 cut(s) 788, 1031
AfiI CCNNNNNNNGG 4 cut(s) 180, 274, 340, 959
AflII CTTAAG 1 cut(s) 5
AjnI CCWGG 1 cut(s) 793
AjuI GAANNNNNNNTTGG 4 cut(s) 38, 70, 379, 411
AleI CACNNNNGTG 1 cut(s) 198
AluBI AGCT 7 cut(s) 391, 438, 608, 722, 830, 897, 1185
AluI AGCT 7 cut(s) 391, 438, 608, 722, 830, 897, 1185
Alw21I GWGCWC 2 cut(s) 583, 882
Alw26I GTCTC 3 cut(s) 404, 1003, 1201
AlwI GGATC 2 cut(s) 660, 1343
Ama87I CYCGRG 1 cut(s) 470
Aor13HI TCCGGA 1 cut(s) 1351
AoxI GGCC 3 cut(s) 967, 1107, 1266
ApeKI GCWGC 2 cut(s) 189, 894
ApoI RAATTY 3 cut(s) 425, 773, 833
Asp700I GAANNNNTTC 1 cut(s) 1292
AspLEI GCGC 2 cut(s) 104, 220
AspS9I GGNCC 2 cut(s) 466, 1266
AsuC2I CCSGG 2 cut(s) 471, 472
AsuHPI GGTGA 6 cut(s) 124, 199, 289, 497, 665, 809
AsuNHI GCTAGC 1 cut(s) 980
AvaI CYCGRG 1 cut(s) 470
AvaII GGWCC 1 cut(s) 466
BalI TGGCCA 1 cut(s) 1109
BanI GGYRCC 1 cut(s) 767
BbsI GAAGAC 1 cut(s) 267
Bbv12I GWGCWC 2 cut(s) 583, 882
BbvI GCAGC 2 cut(s) 176, 906
BccI CCATC 5 cut(s) 218, 261, 476, 499, 1349
BcgI CGANNNNNNTGC 2 cut(s) 757, 791
BciT130I CCWGG 1 cut(s) 795
BcnI CCSGG 2 cut(s) 471, 472
BcoDI GTCTC 3 cut(s) 404, 1003, 1201
BfaI CTAG 1 cut(s) 981
BfmI CTRYAG 2 cut(s) 838, 1275
BfrI CTTAAG 1 cut(s) 5
BisI GCNGC 3 cut(s) 190, 364, 895
BlpI GCTNAGC 1 cut(s) 434
BlsI GCNGC 3 cut(s) 191, 365, 896
Bme1390I CCNGG 3 cut(s) 471, 472, 795
Bme18I GGWCC 1 cut(s) 466
BmeT110I CYCGRG 1 cut(s) 470
BmgT120I GGNCC 2 cut(s) 466, 1266
BmiI GGNNCC 2 cut(s) 468, 769
BmrFI CCNGG 3 cut(s) 471, 472, 795
BmsI GCATC 3 cut(s) 433, 856, 857
BmtI GCTAGC 1 cut(s) 984
BpiI GAAGAC 1 cut(s) 267
BplI GAGNNNNNCTC 2 cut(s) 1274, 1306
BpmI CTGGAG 1 cut(s) 666
Bpu1102I GCTNAGC 1 cut(s) 434
BpuMI CCSGG 2 cut(s) 471, 472
BsaI GGTCTC 1 cut(s) 1003
BsaJI CCNNGG 4 cut(s) 469, 470, 970, 1110
BsaWI WCCGGW 1 cut(s) 1351
Bsc4I CCNNNNNNNGG 4 cut(s) 180, 274, 340, 959
Bse1I ACTGG 2 cut(s) 289, 944
Bse3DI GCAATG 1 cut(s) 806
BseAI TCCGGA 1 cut(s) 1351
BseBI CCWGG 1 cut(s) 795
BseDI CCNNGG 4 cut(s) 469, 470, 970, 1110
BseGI GGATG 3 cut(s) 253, 448, 1360
BseLI CCNNNNNNNGG 4 cut(s) 180, 274, 340, 959
BseMI GCAATG 1 cut(s) 806
BseMII CTCAG 3 cut(s) 97, 425, 438
BseNI ACTGG 2 cut(s) 289, 944
BseRI GAGGAG 1 cut(s) 720
BseXI GCAGC 2 cut(s) 176, 906
Bsh1236I CGCG 1 cut(s) 218
BshFI GGCC 3 cut(s) 969, 1109, 1268
BshNI GGYRCC 1 cut(s) 767
BsiHKAI GWGCWC 2 cut(s) 583, 882
BsiHKCI CYCGRG 1 cut(s) 470
BsiSI CCGG 3 cut(s) 181, 471, 1352
BslFI GGGAC 1 cut(s) 487
BslI CCNNNNNNNGG 4 cut(s) 180, 274, 340, 959
BsmAI GTCTC 3 cut(s) 404, 1003, 1201
BsmFI GGGAC 1 cut(s) 487
BsnI GGCC 3 cut(s) 969, 1109, 1268
Bso31I GGTCTC 1 cut(s) 1003
BsoBI CYCGRG 1 cut(s) 470
Bsp1286I GDGCHC 2 cut(s) 583, 882
Bsp13I TCCGGA 1 cut(s) 1351
Bsp1407I TGTACA 1 cut(s) 786
Bsp143I GATC 2 cut(s) 652, 1348
Bsp1720I GCTNAGC 1 cut(s) 434
Bsp19I CCATGG 1 cut(s) 1110
BspACI CCGC 5 cut(s) 42, 146, 156, 363, 869
BspANI GGCC 3 cut(s) 969, 1109, 1268
BspCNI CTCAG 3 cut(s) 96, 426, 439
BspEI TCCGGA 1 cut(s) 1351
BspFNI CGCG 1 cut(s) 218
BspLI GGNNCC 2 cut(s) 468, 769
BspOI GCTAGC 1 cut(s) 984
BspPI GGATC 2 cut(s) 660, 1343
BspQI GCTCTTC 1 cut(s) 232
BspT107I GGYRCC 1 cut(s) 767
BspTI CTTAAG 1 cut(s) 5
BspTNI GGTCTC 1 cut(s) 1003
BsrDI GCAATG 1 cut(s) 806
BsrGI TGTACA 1 cut(s) 786
BsrI ACTGG 2 cut(s) 289, 944
BssECI CCNNGG 4 cut(s) 469, 470, 970, 1110
BssMI GATC 2 cut(s) 652, 1348
BssNAI GTATAC 1 cut(s) 745
BssT1I CCWWGG 2 cut(s) 970, 1110
Bst1107I GTATAC 1 cut(s) 745
Bst2UI CCWGG 1 cut(s) 795
Bst4CI ACNGT 6 cut(s) 200, 349, 715, 825, 1034, 1276
Bst6I CTCTTC 6 cut(s) 232, 250, 549, 667, 690, 1305
BstAFI CTTAAG 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 786
BstC8I GCNNGC 3 cut(s) 368, 923, 982
BstDEI CTNAG 6 cut(s) 83, 434, 447, 1133, 1249, 1343
BstDSI CCRYGG 1 cut(s) 1110
BstF5I GGATG 3 cut(s) 253, 448, 1360
BstFNI CGCG 1 cut(s) 218
BstHHI GCGC 2 cut(s) 104, 220
BstKTI GATC 2 cut(s) 655, 1351
BstMAI GTCTC 3 cut(s) 404, 1003, 1201
BstMBI GATC 2 cut(s) 652, 1348
BstMWI GCNNNNNNNGC 4 cut(s) 186, 388, 900, 981
BstNI CCWGG 1 cut(s) 795
BstNSI RCATGY 1 cut(s) 1241
BstSCI CCNGG 3 cut(s) 469, 470, 793
BstSFI CTRYAG 2 cut(s) 838, 1275
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 2 cut(s) 176, 906
BstV2I GAAGAC 1 cut(s) 267
BstX2I RGATCY 1 cut(s) 652
BstXI CCANNNNNNTGG 2 cut(s) 690, 992
BstYI RGATCY 1 cut(s) 652
BstZ17I GTATAC 1 cut(s) 745
BsuRI GGCC 3 cut(s) 969, 1109, 1268
BtgI CCRYGG 1 cut(s) 1110
BtgZI GCGATG 1 cut(s) 199
BtsCI GGATG 3 cut(s) 253, 448, 1360
BtsIMutI CAGTG 2 cut(s) 923, 1039
Cac8I GCNNGC 3 cut(s) 368, 923, 982
CfoI GCGC 2 cut(s) 104, 220
Cfr13I GGNCC 2 cut(s) 466, 1266
Cfr9I CCCGGG 1 cut(s) 470
CseI GACGC 1 cut(s) 865
CsiI ACCWGGT 1 cut(s) 793
Csp6I GTAC 2 cut(s) 787, 1030
CviAII CATG 8 cut(s) 584, 627, 734, 986, 1105, 1111, 1238, 1270
CviQI GTAC 2 cut(s) 787, 1030
DdeI CTNAG 6 cut(s) 83, 434, 447, 1133, 1249, 1343
DpnI GATC 2 cut(s) 654, 1350
DpnII GATC 2 cut(s) 652, 1348
DraIII CACNNNGTG 1 cut(s) 797
EaeI YGGCCR 1 cut(s) 1107
Eam1104I CTCTTC 6 cut(s) 232, 250, 549, 667, 690, 1305
EarI CTCTTC 6 cut(s) 232, 250, 549, 667, 690, 1305
EciI GGCGGA 1 cut(s) 145
Eco130I CCWWGG 2 cut(s) 970, 1110
Eco31I GGTCTC 1 cut(s) 1003
Eco32I GATATC 3 cut(s) 453, 914, 1383
Eco47I GGWCC 1 cut(s) 466
Eco57I CTGAAG 1 cut(s) 515
Eco88I CYCGRG 1 cut(s) 470
EcoRI GAATTC 1 cut(s) 833
EcoRII CCWGG 1 cut(s) 793
EcoRV GATATC 3 cut(s) 453, 914, 1383
EcoT14I CCWWGG 2 cut(s) 970, 1110
ErhI CCWWGG 2 cut(s) 970, 1110
FaeI CATG 8 cut(s) 587, 630, 737, 989, 1108, 1114, 1241, 1273
FaqI GGGAC 1 cut(s) 487
FatI CATG 8 cut(s) 583, 626, 733, 985, 1104, 1110, 1237, 1269
FauI CCCGC 2 cut(s) 49, 862
FblI GTMKAC 1 cut(s) 744
Fnu4HI GCNGC 3 cut(s) 190, 364, 895
FokI GGATG 3 cut(s) 240, 455, 1367
Fsp4HI GCNGC 3 cut(s) 190, 364, 895
FspBI CTAG 1 cut(s) 981
GlaI GCGC 2 cut(s) 103, 219
GluI GCNGC 3 cut(s) 190, 364, 895
GsuI CTGGAG 1 cut(s) 666
HaeIII GGCC 3 cut(s) 969, 1109, 1268
HapII CCGG 3 cut(s) 181, 471, 1352
HgaI GACGC 1 cut(s) 865
HhaI GCGC 2 cut(s) 104, 220
Hin1II CATG 8 cut(s) 587, 630, 737, 989, 1108, 1114, 1241, 1273
Hin6I GCGC 2 cut(s) 102, 218
HinP1I GCGC 2 cut(s) 102, 218
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 2 cut(s) 54, 679
HpaII CCGG 3 cut(s) 181, 471, 1352
HphI GGTGA 6 cut(s) 124, 199, 289, 497, 665, 809
Hpy166II GTNNAC 6 cut(s) 12, 18, 166, 280, 745, 789
Hpy188I TCNGA 6 cut(s) 86, 359, 779, 817, 855, 865
Hpy188III TCNNGA 8 cut(s) 257, 341, 551, 683, 1008, 1143, 1151, 1352
Hpy8I GTNNAC 6 cut(s) 12, 18, 166, 280, 745, 789
HpyAV CCTTC 8 cut(s) 81, 184, 381, 490, 822, 901, 1257, 1303
HpyCH4III ACNGT 6 cut(s) 200, 349, 715, 825, 1034, 1276
HpyCH4IV ACGT 3 cut(s) 14, 162, 1116
HpyCH4V TGCA 4 cut(s) 921, 1331, 1391, 1397
HpyF10VI GCNNNNNNNGC 4 cut(s) 186, 388, 900, 981
HpyF3I CTNAG 6 cut(s) 83, 434, 447, 1133, 1249, 1343
HpySE526I ACGT 3 cut(s) 14, 162, 1116
Hsp92II CATG 8 cut(s) 587, 630, 737, 989, 1108, 1114, 1241, 1273
HspAI GCGC 2 cut(s) 102, 218
Kpn2I TCCGGA 1 cut(s) 1351
Kzo9I GATC 2 cut(s) 652, 1348
LguI GCTCTTC 1 cut(s) 232
LmnI GCTCC 2 cut(s) 760, 1190
Lsp1109I GCAGC 2 cut(s) 176, 906
LweI GCATC 3 cut(s) 433, 856, 857
MabI ACCWGGT 1 cut(s) 793
MaeI CTAG 1 cut(s) 981
MaeII ACGT 3 cut(s) 14, 162, 1116
MaeIII GTNAC 2 cut(s) 200, 291
MalI GATC 2 cut(s) 654, 1350
MboI GATC 2 cut(s) 652, 1348
MflI RGATCY 1 cut(s) 652
MhlI GDGCHC 2 cut(s) 583, 882
MlsI TGGCCA 1 cut(s) 1109
MluCI AATT 7 cut(s) 425, 615, 640, 773, 833, 888, 1376
MluNI TGGCCA 1 cut(s) 1109
MlyI GAGTC 1 cut(s) 673
Mox20I TGGCCA 1 cut(s) 1109
MroI TCCGGA 1 cut(s) 1351
MroXI GAANNNNTTC 1 cut(s) 1292
MscI TGGCCA 1 cut(s) 1109
MseI TTAA 3 cut(s) 6, 92, 324
MslI CAYNNNNRTG 3 cut(s) 198, 990, 1109
Msp20I TGGCCA 1 cut(s) 1109
MspA1I CMGCKG 1 cut(s) 830
MspCI CTTAAG 1 cut(s) 5
MspI CCGG 3 cut(s) 181, 471, 1352
MspR9I CCNGG 3 cut(s) 471, 472, 795
MvaI CCWGG 1 cut(s) 795
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 4 cut(s) 186, 388, 900, 981
NciI CCSGG 2 cut(s) 471, 472
NcoI CCATGG 1 cut(s) 1110
NdeII GATC 2 cut(s) 652, 1348
NheI GCTAGC 1 cut(s) 980
NlaIII CATG 8 cut(s) 587, 630, 737, 989, 1108, 1114, 1241, 1273
NlaIV GGNNCC 2 cut(s) 468, 769
NmeAIII GCCGAG 2 cut(s) 201, 326
NmuCI GTSAC 1 cut(s) 200
NspI RCATGY 1 cut(s) 1241
OliI CACNNNNGTG 1 cut(s) 198
PciSI GCTCTTC 1 cut(s) 232
PdmI GAANNNNTTC 1 cut(s) 1292
PfeI GAWTC 1 cut(s) 54
PkrI GCNGC 3 cut(s) 191, 365, 896
PleI GAGTC 1 cut(s) 673
PpsI GAGTC 1 cut(s) 673
PsiI TTATAA 1 cut(s) 1215
Psp1406I AACGTT 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 793
PspGI CCWGG 1 cut(s) 793
PspN4I GGNNCC 2 cut(s) 468, 769
PspPI GGNCC 2 cut(s) 466, 1266
PsuI RGATCY 1 cut(s) 652
PvuII CAGCTG 1 cut(s) 830
RsaI GTAC 2 cut(s) 788, 1031
RsaNI GTAC 2 cut(s) 787, 1030
RseI CAYNNNNRTG 3 cut(s) 198, 990, 1109
SapI GCTCTTC 1 cut(s) 232
SaqAI TTAA 3 cut(s) 6, 92, 324
SatI GCNGC 3 cut(s) 190, 364, 895
Sau3AI GATC 2 cut(s) 652, 1348
Sau96I GGNCC 2 cut(s) 466, 1266
SchI GAGTC 1 cut(s) 673
ScrFI CCNGG 3 cut(s) 471, 472, 795
SduI GDGCHC 2 cut(s) 583, 882
SexAI ACCWGGT 1 cut(s) 793
SfaNI GCATC 3 cut(s) 433, 856, 857
SfcI CTRYAG 2 cut(s) 838, 1275
SinI GGWCC 1 cut(s) 466
SmaI CCCGGG 1 cut(s) 472
SmiMI CAYNNNNRTG 3 cut(s) 198, 990, 1109
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
Sse9I AATT 7 cut(s) 425, 615, 640, 773, 833, 888, 1376
SsiI CCGC 5 cut(s) 42, 146, 156, 363, 869
SspMI CTAG 1 cut(s) 981
StyD4I CCNGG 3 cut(s) 469, 470, 793
StyI CCWWGG 2 cut(s) 970, 1110
TaaI ACNGT 6 cut(s) 200, 349, 715, 825, 1034, 1276
TaiI ACGT 3 cut(s) 17, 165, 1119
TaqI TCGA 3 cut(s) 115, 1007, 1370
TasI AATT 7 cut(s) 425, 615, 640, 773, 833, 888, 1376
TatI WGTACW 2 cut(s) 786, 1029
TauI GCSGC 1 cut(s) 366
TfiI GAWTC 1 cut(s) 54
Tru1I TTAA 3 cut(s) 6, 92, 324
Tru9I TTAA 3 cut(s) 6, 92, 324
TscAI CASTG 2 cut(s) 923, 1039
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 2 cut(s) 189, 894
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 4 cut(s) 618, 900, 1037, 1389
TspGWI ACGGA 3 cut(s) 608, 1328, 1398
TspMI CCCGGG 1 cut(s) 470
TspRI CASTG 2 cut(s) 923, 1039
Vha464I CTTAAG 1 cut(s) 5
VpaK11BI GGWCC 1 cut(s) 466
XapI RAATTY 3 cut(s) 425, 773, 833
XceI RCATGY 1 cut(s) 1241
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
XmaI CCCGGG 1 cut(s) 470
XmiI GTMKAC 1 cut(s) 744
XmnI GAANNNNTTC 1 cut(s) 1292
XspI CTAG 1 cut(s) 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.