FvH4_5g07462

Oxygen-independent coproporphyrinogen-III oxidase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0009349
Physical Location & Seq
Reverse (-)
4354957 .. 4356185
1229 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g07462.t1

Sequence Viewer

Length: 1041 bp
ATGGTGAACTATGTCCAGTTACTCTGCCGTGAAATTAATGCAACAAAAGCAGAACATAAAACCAACCCGCCTCTCGAAACTGTCTTTTCCGGAGGCGGCACGCCGTCTCTTGTTCCACCAAAGCTAGTGTCTTCCATAATGGAGACGCTGAGGTTGAAATTCGGGCTGAGCTCGGATGCTGAGATATCTATGGAAATGGACCCCGGAACTTTTGATGGTGAGAAAATGAAGGGAATGATGGAGTTGGGTGTGAATAGGGTGTCATTGGGAGTTCAGGCGTTTCAACAGGAGCTGTTGAAGTCTTGTGGGAGAGCTCATGGTTTTAAGTTGGTTTATGAAGCAATTGAGATTGTTGGGTCATGTGGGGTTGAGAATTGGAGTATGGATCTTATCTCTTCTCTTCCTCATCAGACCCCGGAAATGTGGGAAGAGAGCTTGAGGCTAACAGTGGAAGCTCGTCCTCCCCATGTGTCGGTTTACGATTTACAAGTGGAACAAGGCACCAAATTCGGAAGATTGTATACGCCAGGGGAGTTTCCATTGCCTTCTGAAACAAGGTCAGCTGAGTTCTATAGAATGGCATCTGGGACGCTGTCTGATGCATGTTATGAGCACTATGAGATTAGTAGCTATGGCAAGAGTGGGTTTCAGTGCAAGCATAATCTTACTTACTGGAAGAACAAGCCTTTCTATGGTTTTGGCCTTGGCGCTGCTAGCCATGTTGGTGGTGTGAGGTTTTCGAGACCCAAAATGATGAAAGAGTACAGTGGTTATGTGGAGAATCTGGAAAATGGGTTGGTGGAATGTGGTGGGAGGGATCACATTGATGCTAAGGATGTGGCCATGGATGTTGTTACGCTGTCTCTAAGAACTTCAAGAGATGAACAGAGAAGAGCCATGACTGCGGATGAACTGAACACCTTGACACTAAACGAAGAAGAGATCGAGCAAAGAATTGCCTACATTCGTCGAAGTGATCCAGATGGTTTCCTTTTATCGAATGAATTGATATCCCTTGCGTTTGCAGTTGTATCTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HemN_C Radical_SAM

Protein Analysis

347

Amino Acids

38.61

Weight (kDa)

5.26

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Radical_SAM PF04055 10 - 148 4.5e-18 Radical SAM superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 500
AccI GTMKAC 1 cut(s) 521
AccIII TCCGGA 1 cut(s) 89
AciI CCGC 3 cut(s) 68, 96, 905
AclWI GGATC 3 cut(s) 393, 825, 971
AcoI YGGCCR 1 cut(s) 840
AcsI RAATTY 2 cut(s) 158, 506
AfaI GTAC 1 cut(s) 764
AfiI CCNNNNNNNGG 2 cut(s) 472, 692
AgsI TTSAA 4 cut(s) 157, 284, 298, 876
AjnI CCWGG 1 cut(s) 526
AluBI AGCT 8 cut(s) 124, 171, 292, 314, 435, 455, 563, 630
AluI AGCT 8 cut(s) 124, 171, 292, 314, 435, 455, 563, 630
Alw21I GWGCWC 3 cut(s) 173, 316, 615
Alw26I GTCTC 4 cut(s) 111, 137, 736, 867
AlwI GGATC 3 cut(s) 393, 825, 971
AlwNI CAGNNNCTG 1 cut(s) 292
Aor13HI TCCGGA 1 cut(s) 89
AoxI GGCC 2 cut(s) 700, 840
ApeKI GCWGC 1 cut(s) 710
ApoI RAATTY 2 cut(s) 158, 506
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
AseI ATTAAT 1 cut(s) 36
AspLEI GCGC 1 cut(s) 710
AspS9I GGNCC 1 cut(s) 199
AsuC2I CCSGG 2 cut(s) 204, 416
AsuHPI GGTGA 2 cut(s) 16, 230
AsuNHI GCTAGC 1 cut(s) 713
AvaII GGWCC 1 cut(s) 199
BalI TGGCCA 1 cut(s) 842
BanI GGYRCC 1 cut(s) 500
BanII GRGCYC 2 cut(s) 173, 316
BarI GAAGNNNNNNTAC 2 cut(s) 505, 537
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 3 cut(s) 173, 316, 615
BbvCI CCTCAGC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 697
BccI CCATC 3 cut(s) 209, 232, 977
BceAI ACGGC 2 cut(s) 12, 88
BcgI CGANNNNNNTGC 2 cut(s) 490, 524
BciT130I CCWGG 1 cut(s) 528
BcnI CCSGG 2 cut(s) 204, 416
BcoDI GTCTC 4 cut(s) 111, 137, 736, 867
BfaI CTAG 2 cut(s) 125, 714
BfmI CTRYAG 1 cut(s) 571
BfoI RGCGCY 1 cut(s) 711
BisI GCNGC 2 cut(s) 97, 711
BlpI GCTNAGC 1 cut(s) 167
BlsI GCNGC 2 cut(s) 98, 712
Bme1390I CCNGG 3 cut(s) 204, 416, 528
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 2 cut(s) 201, 502
BmrFI CCNGG 3 cut(s) 204, 416, 528
BmsI GCATC 4 cut(s) 166, 589, 590, 817
BmtI GCTAGC 1 cut(s) 717
BpiI GAAGAC 1 cut(s) 123
Bpu10I CCTNAGC 2 cut(s) 149, 831
Bpu1102I GCTNAGC 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 457
BpuMI CCSGG 2 cut(s) 204, 416
BsaI GGTCTC 1 cut(s) 736
BsaJI CCNNGG 5 cut(s) 202, 414, 527, 703, 843
BsaWI WCCGGW 1 cut(s) 89
Bsc4I CCNNNNNNNGG 2 cut(s) 472, 692
Bse1I ACTGG 2 cut(s) 16, 677
Bse3DI GCAATG 1 cut(s) 539
BseAI TCCGGA 1 cut(s) 89
BseBI CCWGG 1 cut(s) 528
BseDI CCNNGG 5 cut(s) 202, 414, 527, 703, 843
BseGI GGATG 4 cut(s) 181, 841, 853, 913
BseLI CCNNNNNNNGG 2 cut(s) 472, 692
BseMI GCAATG 1 cut(s) 539
BseMII CTCAG 4 cut(s) 140, 158, 171, 555
BseNI ACTGG 2 cut(s) 16, 677
BseXI GCAGC 1 cut(s) 697
BshFI GGCC 2 cut(s) 702, 842
BshNI GGYRCC 1 cut(s) 500
BsiHKAI GWGCWC 3 cut(s) 173, 316, 615
BsiSI CCGG 3 cut(s) 90, 204, 416
BslFI GGGAC 1 cut(s) 601
BslI CCNNNNNNNGG 2 cut(s) 472, 692
BsmAI GTCTC 4 cut(s) 111, 137, 736, 867
BsmBI CGTCTC 2 cut(s) 111, 137
BsmFI GGGAC 1 cut(s) 601
BsnI GGCC 2 cut(s) 702, 842
Bso31I GGTCTC 1 cut(s) 736
Bsp1286I GDGCHC 3 cut(s) 173, 316, 615
Bsp13I TCCGGA 1 cut(s) 89
Bsp143I GATC 4 cut(s) 385, 817, 942, 976
Bsp1720I GCTNAGC 1 cut(s) 167
Bsp19I CCATGG 1 cut(s) 843
BspACI CCGC 3 cut(s) 68, 96, 905
BspANI GGCC 2 cut(s) 702, 842
BspCNI CTCAG 4 cut(s) 141, 159, 172, 556
BspEI TCCGGA 1 cut(s) 89
BspLI GGNNCC 2 cut(s) 201, 502
BspOI GCTAGC 1 cut(s) 717
BspPI GGATC 3 cut(s) 393, 825, 971
BspQI GCTCTTC 1 cut(s) 886
BspT107I GGYRCC 1 cut(s) 500
BspTNI GGTCTC 1 cut(s) 736
BsrDI GCAATG 1 cut(s) 539
BsrI ACTGG 2 cut(s) 16, 677
BssECI CCNNGG 5 cut(s) 202, 414, 527, 703, 843
BssMI GATC 4 cut(s) 385, 817, 942, 976
BssNAI GTATAC 1 cut(s) 522
BssT1I CCWWGG 2 cut(s) 703, 843
Bst1107I GTATAC 1 cut(s) 522
Bst2UI CCWGG 1 cut(s) 528
Bst4CI ACNGT 3 cut(s) 82, 448, 767
Bst6I CTCTTC 5 cut(s) 400, 405, 423, 886, 933
BstC8I GCNNGC 3 cut(s) 101, 656, 715
BstDEI CTNAG 6 cut(s) 149, 167, 180, 564, 831, 866
BstDSI CCRYGG 1 cut(s) 843
BstF5I GGATG 4 cut(s) 181, 841, 853, 913
BstH2I RGCGCY 1 cut(s) 711
BstHHI GCGC 1 cut(s) 710
BstKTI GATC 4 cut(s) 388, 820, 945, 979
BstMAI GTCTC 4 cut(s) 111, 137, 736, 867
BstMBI GATC 4 cut(s) 385, 817, 942, 976
BstMWI GCNNNNNNNGC 3 cut(s) 47, 714, 902
BstNI CCWGG 1 cut(s) 528
BstNSI RCATGY 1 cut(s) 606
BstSCI CCNGG 3 cut(s) 202, 414, 526
BstSFI CTRYAG 1 cut(s) 571
BstV1I GCAGC 1 cut(s) 697
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 385
BstXI CCANNNNNNTGG 1 cut(s) 725
BstYI RGATCY 1 cut(s) 385
BstZ17I GTATAC 1 cut(s) 522
BsuRI GGCC 2 cut(s) 702, 842
BtgI CCRYGG 1 cut(s) 843
BtsCI GGATG 4 cut(s) 181, 841, 853, 913
BtsIMutI CAGTG 3 cut(s) 453, 656, 772
Cac8I GCNNGC 3 cut(s) 101, 656, 715
CaiI CAGNNNCTG 1 cut(s) 292
CfoI GCGC 1 cut(s) 710
Cfr13I GGNCC 1 cut(s) 199
CseI GACGC 2 cut(s) 154, 598
Csp6I GTAC 1 cut(s) 763
CviAII CATG 7 cut(s) 317, 360, 467, 603, 719, 844, 898
CviQI GTAC 1 cut(s) 763
DdeI CTNAG 6 cut(s) 149, 167, 180, 564, 831, 866
DpnI GATC 4 cut(s) 387, 819, 944, 978
DpnII GATC 4 cut(s) 385, 817, 942, 976
EaeI YGGCCR 1 cut(s) 840
Eam1104I CTCTTC 5 cut(s) 400, 405, 423, 886, 933
EarI CTCTTC 5 cut(s) 400, 405, 423, 886, 933
Ecl136II GAGCTC 2 cut(s) 171, 314
Eco130I CCWWGG 2 cut(s) 703, 843
Eco24I GRGCYC 2 cut(s) 173, 316
Eco31I GGTCTC 1 cut(s) 736
Eco32I GATATC 2 cut(s) 186, 1011
Eco47I GGWCC 1 cut(s) 199
Eco53kI GAGCTC 2 cut(s) 171, 314
EcoICRI GAGCTC 2 cut(s) 171, 314
EcoRII CCWGG 1 cut(s) 526
EcoRV GATATC 2 cut(s) 186, 1011
EcoT14I CCWWGG 2 cut(s) 703, 843
EcoT22I ATGCAT 1 cut(s) 604
EcoT38I GRGCYC 2 cut(s) 173, 316
ErhI CCWWGG 2 cut(s) 703, 843
Esp3I CGTCTC 2 cut(s) 111, 137
FaeI CATG 7 cut(s) 320, 363, 470, 606, 722, 847, 901
FaqI GGGAC 1 cut(s) 601
FatI CATG 7 cut(s) 316, 359, 466, 602, 718, 843, 897
FauI CCCGC 1 cut(s) 75
FblI GTMKAC 1 cut(s) 521
Fnu4HI GCNGC 2 cut(s) 97, 711
FokI GGATG 4 cut(s) 188, 848, 860, 920
FriOI GRGCYC 2 cut(s) 173, 316
Fsp4HI GCNGC 2 cut(s) 97, 711
FspBI CTAG 2 cut(s) 125, 714
GlaI GCGC 1 cut(s) 709
GluI GCNGC 2 cut(s) 97, 711
HaeII RGCGCY 1 cut(s) 711
HaeIII GGCC 2 cut(s) 702, 842
HapII CCGG 3 cut(s) 90, 204, 416
HgaI GACGC 2 cut(s) 154, 598
HhaI GCGC 1 cut(s) 710
Hin1II CATG 7 cut(s) 320, 363, 470, 606, 722, 847, 901
Hin6I GCGC 1 cut(s) 708
HinP1I GCGC 1 cut(s) 708
HinfI GANTC 1 cut(s) 781
HpaII CCGG 3 cut(s) 90, 204, 416
HphI GGTGA 2 cut(s) 16, 230
Hpy166II GTNNAC 3 cut(s) 7, 478, 522
Hpy188I TCNGA 5 cut(s) 175, 411, 512, 550, 598
Hpy188III TCNNGA 6 cut(s) 74, 90, 741, 785, 876, 980
Hpy8I GTNNAC 3 cut(s) 7, 478, 522
Hpy99I CGWCG 1 cut(s) 972
HpyAV CCTTC 2 cut(s) 223, 555
HpyCH4III ACNGT 3 cut(s) 82, 448, 767
HpyCH4V TGCA 4 cut(s) 41, 602, 654, 1025
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 714, 902
HpyF3I CTNAG 6 cut(s) 149, 167, 180, 564, 831, 866
Hsp92II CATG 7 cut(s) 320, 363, 470, 606, 722, 847, 901
HspAI GCGC 1 cut(s) 708
Kpn2I TCCGGA 1 cut(s) 89
Kzo9I GATC 4 cut(s) 385, 817, 942, 976
LguI GCTCTTC 1 cut(s) 886
LmnI GCTCC 1 cut(s) 289
Lsp1109I GCAGC 1 cut(s) 697
LweI GCATC 4 cut(s) 166, 589, 590, 817
MaeI CTAG 2 cut(s) 125, 714
MaeIII GTNAC 2 cut(s) 18, 853
MalI GATC 4 cut(s) 387, 819, 944, 978
MboI GATC 4 cut(s) 385, 817, 942, 976
MboII GAAGA 9 cut(s) 123, 387, 392, 440, 525, 688, 903, 947, 950
MfeI CAATTG 1 cut(s) 342
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 3 cut(s) 173, 316, 615
MlsI TGGCCA 1 cut(s) 842
MluCI AATT 7 cut(s) 33, 158, 342, 373, 506, 954, 1004
MluNI TGGCCA 1 cut(s) 842
MnlI CCTC 8 cut(s) 81, 86, 144, 414, 432, 471, 726, 807
Mox20I TGGCCA 1 cut(s) 842
Mph1103I ATGCAT 1 cut(s) 604
MroI TCCGGA 1 cut(s) 89
MscI TGGCCA 1 cut(s) 842
MseI TTAA 2 cut(s) 36, 324
MslI CAYNNNNRTG 2 cut(s) 723, 825
Msp20I TGGCCA 1 cut(s) 842
MspA1I CMGCKG 1 cut(s) 563
MspI CCGG 3 cut(s) 90, 204, 416
MspR9I CCNGG 3 cut(s) 204, 416, 528
MunI CAATTG 1 cut(s) 342
MvaI CCWGG 1 cut(s) 528
MwoI GCNNNNNNNGC 3 cut(s) 47, 714, 902
NciI CCSGG 2 cut(s) 204, 416
NcoI CCATGG 1 cut(s) 843
NdeII GATC 4 cut(s) 385, 817, 942, 976
NheI GCTAGC 1 cut(s) 713
NlaIII CATG 7 cut(s) 320, 363, 470, 606, 722, 847, 901
NlaIV GGNNCC 2 cut(s) 201, 502
NsiI ATGCAT 1 cut(s) 604
NspI RCATGY 1 cut(s) 606
PciSI GCTCTTC 1 cut(s) 886
PfeI GAWTC 1 cut(s) 781
PflFI GACNNNGTC 1 cut(s) 592
PkrI GCNGC 2 cut(s) 98, 712
PshBI ATTAAT 1 cut(s) 36
Psp124BI GAGCTC 2 cut(s) 173, 316
Psp6I CCWGG 1 cut(s) 526
PspGI CCWGG 1 cut(s) 526
PspN4I GGNNCC 2 cut(s) 201, 502
PspPI GGNCC 1 cut(s) 199
PstNI CAGNNNCTG 1 cut(s) 292
PsuI RGATCY 1 cut(s) 385
PsyI GACNNNGTC 1 cut(s) 592
PvuII CAGCTG 1 cut(s) 563
RsaI GTAC 1 cut(s) 764
RsaNI GTAC 1 cut(s) 763
RseI CAYNNNNRTG 2 cut(s) 723, 825
SacI GAGCTC 2 cut(s) 173, 316
SapI GCTCTTC 1 cut(s) 886
SaqAI TTAA 2 cut(s) 36, 324
SatI GCNGC 2 cut(s) 97, 711
Sau3AI GATC 4 cut(s) 385, 817, 942, 976
Sau96I GGNCC 1 cut(s) 199
ScrFI CCNGG 3 cut(s) 204, 416, 528
SduI GDGCHC 3 cut(s) 173, 316, 615
SfaNI GCATC 4 cut(s) 166, 589, 590, 817
SfcI CTRYAG 1 cut(s) 571
SinI GGWCC 1 cut(s) 199
SmiMI CAYNNNNRTG 2 cut(s) 723, 825
SmlI CTYRAG 1 cut(s) 436
SmoI CTYRAG 1 cut(s) 436
Sse9I AATT 7 cut(s) 33, 158, 342, 373, 506, 954, 1004
SsiI CCGC 3 cut(s) 68, 96, 905
SspMI CTAG 2 cut(s) 125, 714
SstI GAGCTC 2 cut(s) 173, 316
StyD4I CCNGG 3 cut(s) 202, 414, 526
StyI CCWWGG 2 cut(s) 703, 843
TaaI ACNGT 3 cut(s) 82, 448, 767
TaqI TCGA 5 cut(s) 75, 740, 945, 970, 998
TasI AATT 7 cut(s) 33, 158, 342, 373, 506, 954, 1004
TatI WGTACW 1 cut(s) 762
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 1 cut(s) 781
Tru1I TTAA 2 cut(s) 36, 324
Tru9I TTAA 2 cut(s) 36, 324
TscAI CASTG 3 cut(s) 453, 656, 772
TseI GCWGC 1 cut(s) 710
TspDTI ATGAA 6 cut(s) 242, 351, 770, 897, 924, 1017
TspGWI ACGGA 1 cut(s) 1026
TspRI CASTG 3 cut(s) 453, 656, 772
Tth111I GACNNNGTC 1 cut(s) 592
VpaK11BI GGWCC 1 cut(s) 199
VspI ATTAAT 1 cut(s) 36
XapI RAATTY 2 cut(s) 158, 506
XceI RCATGY 1 cut(s) 606
XmiI GTMKAC 1 cut(s) 521
XspI CTAG 2 cut(s) 125, 714
Zsp2I ATGCAT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.