Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009349

Physical Location & Seq

Genomic Coordinates Forward (+)

29593560 .. 29593919

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1152300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGACAAACTACTTACAGTTACTCTGCCGAGAAATCAACTCCACAAAAGCCGAAAACAAGACCGATCGGCCTCTGGAGAAGGTGTTTTTTTGCAGCGGCACGCCATCTCTTTCGCCGCCAAAGCTCGTGAATTCCGTTTTGGAGACGTTCGAGGTTGAAATTCGGGTTGAGTTCCCTCCAAGTCGAACAAGGCACGAAATCTACGGTTTTAGTTTTGGAATGAATTTGGTCCTGAAGTTGGAGTTTTTTGTTTGCAGGTATACACCAGGGGAGTTCCCGTTGCCTTCAGAAACGCGGTCTGCTGAGTTCTATAAGATGGCGTCTAGGACGCCTTCGGATATCACTGCAAACACAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HemN_C Radical_SAM

Protein Analysis

120

Amino Acids

13.65

Weight (kDa)

6.58

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63290
fragaria_vesca	FvH4_5g07331 FvH4_5g07462
malus_domestica	MD06G1152300.v1.1 MD06G1154400.v1.1 MD06G1157100.v1.1 MD06G1157200.v1.1 MD14G1163800.v1.1
prunus_persica	Prupe.5G157200_v2.0.a1
pyrus_communis	pycom06g14000 pycom14g13650
rosa_chinensis	RchiOBHm_Chr7g0191211
rosa_laevigata	RLG00000004468 RLG00000004469
rosa_multiflora	Rmu_co8185394.1_g000001 Rmu_sc0027561.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263970
rosa_rugosa	Rorug06G0509600
rosa_samantha	Rh7AG116800 Rh7BG119100 Rh7CG121700 Rh7DG120100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	246
AccI	GTMKAC	1 cut(s)	260
AccII	CGCG	1 cut(s)	295
AciI	CCGC	3 cut(s)	96, 116, 295
AcsI	RAATTY	3 cut(s)	130, 159, 223
AcuI	CTGAAG	2 cut(s)	254, 270
AcyI	GRCGYC	2 cut(s)	320, 329
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	265
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
Alw26I	GTCTC	1 cut(s)	137
AoxI	GGCC	1 cut(s)	68
ApeKI	GCWGC	1 cut(s)	93
ApoI	RAATTY	3 cut(s)	130, 159, 223
AspS9I	GGNCC	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	229
BauI	CACGAG	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	105
BccI	CCATC	2 cut(s)	112, 310
BciT130I	CCWGG	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	246
BisI	GCNGC	3 cut(s)	94, 97, 116
BlsI	GCNGC	3 cut(s)	95, 98, 117
Bme1390I	CCNGG	1 cut(s)	267
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	267
BpmI	CTGGAG	1 cut(s)	95
BsaHI	GRCGYC	2 cut(s)	320, 329
BsaJI	CCNNGG	1 cut(s)	266
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 263, 293
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	266
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	105
Bsh1236I	CGCG	1 cut(s)	295
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	1 cut(s)	70
BsiEI	CGRYCG	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	137
BsmBI	CGTCTC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	70
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	3 cut(s)	96, 116, 295
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	1 cut(s)	64
BssNAI	GTATAC	1 cut(s)	261
BssNI	GRCGYC	2 cut(s)	320, 329
BssSI	CACGAG	1 cut(s)	125
Bst1107I	GTATAC	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	125
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	18, 206
BstACI	GRCGYC	2 cut(s)	320, 329
BstC8I	GCNNGC	1 cut(s)	101
BstDEI	CTNAG	1 cut(s)	303
BstFNI	CGCG	1 cut(s)	295
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	1 cut(s)	64
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNI	CCWGG	1 cut(s)	267
BstSCI	CCNGG	1 cut(s)	265
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	105
BstZ17I	GTATAC	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	70
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	342
BveI	ACCTGC	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	229
CseI	GACGC	2 cut(s)	309, 337
CviJI	RGCY	3 cut(s)	50, 70, 124
CviKI_1	RGCY	3 cut(s)	50, 70, 124
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eco32I	GATATC	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	229
Eco57I	CTGAAG	2 cut(s)	254, 270
EcoRI	GAATTC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	265
EcoRV	GATATC	1 cut(s)	340
Esp3I	CGTCTC	1 cut(s)	137
FaiI	YATR	2 cut(s)	261, 312
FblI	GTMKAC	1 cut(s)	260
Fnu4HI	GCNGC	3 cut(s)	94, 97, 116
Fsp4HI	GCNGC	3 cut(s)	94, 97, 116
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	3 cut(s)	94, 97, 116
GsuI	CTGGAG	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	70
HgaI	GACGC	2 cut(s)	309, 337
Hin1I	GRCGYC	2 cut(s)	320, 329
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	2 cut(s)	289, 337
Hpy188III	TCNNGA	3 cut(s)	74, 127, 232
Hpy8I	GTNNAC	1 cut(s)	261
HpyAV	CCTTC	3 cut(s)	73, 294, 342
HpyCH4III	ACNGT	2 cut(s)	18, 206
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	3 cut(s)	93, 255, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	1 cut(s)	146
Hsp92I	GRCGYC	2 cut(s)	320, 329
Kzo9I	GATC	1 cut(s)	64
LpnPI	CCDG	5 cut(s)	59, 241, 245, 252, 279
Lsp1109I	GCAGC	1 cut(s)	105
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	1 cut(s)	18
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MluCI	AATT	3 cut(s)	130, 159, 223
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	3 cut(s)	81, 145, 186
MspA1I	CMGCKG	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	267
MvnI	CGCG	1 cut(s)	295
MwoI	GCNNNNNNNGC	1 cut(s)	121
NdeII	GATC	1 cut(s)	64
NmeAIII	GCCGAG	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PkrI	GCNGC	3 cut(s)	95, 98, 117
Ple19I	CGATCG	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspPI	GGNCC	1 cut(s)	229
PvuI	CGATCG	1 cut(s)	67
SatI	GCNGC	3 cut(s)	94, 97, 116
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	1 cut(s)	229
ScrFI	CCNGG	1 cut(s)	267
SetI	ASST	5 cut(s)	84, 126, 149, 156, 260
SinI	GGWCC	1 cut(s)	229
Sse9I	AATT	3 cut(s)	130, 159, 223
SsiI	CCGC	3 cut(s)	96, 116, 295
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	1 cut(s)	265
TaaI	ACNGT	2 cut(s)	18, 206
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	2 cut(s)	150, 184
TaqII	GACCGA	1 cut(s)	77
TasI	AATT	3 cut(s)	130, 159, 223
TauI	GCSGC	2 cut(s)	99, 118
TscAI	CASTG	1 cut(s)	349
TseI	GCWGC	1 cut(s)	93
TspDTI	ATGAA	1 cut(s)	236
TspGWI	ACGGA	1 cut(s)	124
TspRI	CASTG	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	3 cut(s)	130, 159, 223
XmiI	GTMKAC	1 cut(s)	260
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.