MD06G1154400.v1.1

Oxygen-independent coproporphyrinogen-III oxidase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0009349
Physical Location & Seq
Forward (+)
29753278 .. 29753637
360 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1154400.v1.1.491

Sequence Viewer

Length: 360 bp
ATGACAAACTACTTCCAGTTACTCTGCCGGGAAATCAACTCCACAAAAGCCGAAAACAAGACCGACCGGCCTCCGGAGAAGGTGGTTTTTTGCAGCGGCACGCCATCTCTTGTGCCGCCAAAGCTCGTGAATTCCGTTTTGGAGACGTTCGAGGTTGAAATTCGGGTTGAGTTCCCTCCAAGTCGAACAAGGCACGAAATCTACGGTTTTAGTTTTGGAATGAATTTGGTCCTGAAGTTGGAGTTTTTTGTTTGCAGGTATACACCAGGGGAGTTCCCGTTGCCTTCAGAAACGCGGTCTGCTGAGTTCTATAAGATGGCGTCTAGGACGCTTTCGGATATCACTGCAAACACAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HemN_C Radical_SAM

Protein Analysis

120

Amino Acids

13.65

Weight (kDa)

6.58

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 246
AccI GTMKAC 1 cut(s) 260
AccII CGCG 1 cut(s) 295
AccIII TCCGGA 1 cut(s) 73
AciI CCGC 3 cut(s) 96, 116, 295
AcsI RAATTY 3 cut(s) 130, 159, 223
AcuI CTGAAG 2 cut(s) 254, 270
AcyI GRCGYC 1 cut(s) 320
AfiI CCNNNNNNNGG 2 cut(s) 73, 238
AgsI TTSAA 1 cut(s) 158
AjnI CCWGG 1 cut(s) 265
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
Alw26I GTCTC 1 cut(s) 137
Aor13HI TCCGGA 1 cut(s) 73
AoxI GGCC 1 cut(s) 68
ApeKI GCWGC 1 cut(s) 93
ApoI RAATTY 3 cut(s) 130, 159, 223
AspS9I GGNCC 1 cut(s) 229
AsuC2I CCSGG 1 cut(s) 29
AvaII GGWCC 1 cut(s) 229
BauI CACGAG 1 cut(s) 125
BbvI GCAGC 1 cut(s) 105
BccI CCATC 2 cut(s) 112, 310
BciT130I CCWGG 1 cut(s) 267
BcnI CCSGG 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 1 cut(s) 324
BfuAI ACCTGC 1 cut(s) 246
BisI GCNGC 3 cut(s) 94, 97, 116
BlsI GCNGC 3 cut(s) 95, 98, 117
Bme1390I CCNGG 2 cut(s) 29, 267
Bme18I GGWCC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 229
BmrFI CCNGG 2 cut(s) 29, 267
BpuMI CCSGG 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 320
BsaJI CCNNGG 1 cut(s) 266
BsaWI WCCGGW 1 cut(s) 73
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 238
Bse118I RCCGGY 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 16
BseAI TCCGGA 1 cut(s) 73
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 266
BseLI CCNNNNNNNGG 2 cut(s) 73, 238
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 1 cut(s) 16
BseXI GCAGC 1 cut(s) 105
Bsh1236I CGCG 1 cut(s) 295
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 1 cut(s) 70
BsiEI CGRYCG 1 cut(s) 67
BsiSI CCGG 3 cut(s) 28, 67, 74
BslI CCNNNNNNNGG 2 cut(s) 73, 238
BsmAI GTCTC 1 cut(s) 137
BsmBI CGTCTC 1 cut(s) 137
BsnI GGCC 1 cut(s) 70
Bsp13I TCCGGA 1 cut(s) 73
BspACI CCGC 3 cut(s) 96, 116, 295
BspANI GGCC 1 cut(s) 70
BspCNI CTCAG 1 cut(s) 295
BspEI TCCGGA 1 cut(s) 73
BspFNI CGCG 1 cut(s) 295
BspMI ACCTGC 1 cut(s) 246
BsrFI RCCGGY 1 cut(s) 66
BsrI ACTGG 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 266
BssNAI GTATAC 1 cut(s) 261
BssNI GRCGYC 1 cut(s) 320
BssSI CACGAG 1 cut(s) 125
Bst1107I GTATAC 1 cut(s) 261
Bst2BI CACGAG 1 cut(s) 125
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 1 cut(s) 206
BstACI GRCGYC 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 303
BstFNI CGCG 1 cut(s) 295
BstMAI GTCTC 1 cut(s) 137
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 2 cut(s) 27, 265
BstUI CGCG 1 cut(s) 295
BstV1I GCAGC 1 cut(s) 105
BstZ17I GTATAC 1 cut(s) 261
BsuRI GGCC 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 1 cut(s) 342
BveI ACCTGC 1 cut(s) 246
Cac8I GCNNGC 1 cut(s) 101
Cfr10I RCCGGY 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 229
CseI GACGC 2 cut(s) 309, 337
CviJI RGCY 3 cut(s) 50, 70, 124
CviKI_1 RGCY 3 cut(s) 50, 70, 124
DdeI CTNAG 1 cut(s) 303
Eco32I GATATC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 229
Eco57I CTGAAG 2 cut(s) 254, 270
EcoRI GAATTC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 265
EcoRV GATATC 1 cut(s) 340
Esp3I CGTCTC 1 cut(s) 137
FaiI YATR 2 cut(s) 261, 312
FblI GTMKAC 1 cut(s) 260
Fnu4HI GCNGC 3 cut(s) 94, 97, 116
Fsp4HI GCNGC 3 cut(s) 94, 97, 116
FspBI CTAG 1 cut(s) 324
GluI GCNGC 3 cut(s) 94, 97, 116
HaeIII GGCC 1 cut(s) 70
HapII CCGG 3 cut(s) 28, 67, 74
HgaI GACGC 2 cut(s) 309, 337
Hin1I GRCGYC 1 cut(s) 320
HpaII CCGG 3 cut(s) 28, 67, 74
Hpy166II GTNNAC 1 cut(s) 261
Hpy188I TCNGA 2 cut(s) 289, 337
Hpy188III TCNNGA 3 cut(s) 74, 127, 232
Hpy8I GTNNAC 1 cut(s) 261
HpyAV CCTTC 2 cut(s) 73, 294
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 3 cut(s) 93, 255, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 1 cut(s) 303
HpySE526I ACGT 1 cut(s) 146
Hsp92I GRCGYC 1 cut(s) 320
Kpn2I TCCGGA 1 cut(s) 73
LpnPI CCDG 8 cut(s) 29, 41, 80, 87, 241, 245, 252, 279
Lsp1109I GCAGC 1 cut(s) 105
MaeI CTAG 1 cut(s) 324
MaeII ACGT 1 cut(s) 146
MaeIII GTNAC 1 cut(s) 18
MluCI AATT 3 cut(s) 130, 159, 223
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 3 cut(s) 81, 145, 186
MroI TCCGGA 1 cut(s) 73
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 3 cut(s) 28, 67, 74
MspR9I CCNGG 2 cut(s) 29, 267
MvaI CCWGG 1 cut(s) 267
MvnI CGCG 1 cut(s) 295
MwoI GCNNNNNNNGC 1 cut(s) 121
NciI CCSGG 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PkrI GCNGC 3 cut(s) 95, 98, 117
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspPI GGNCC 1 cut(s) 229
SatI GCNGC 3 cut(s) 94, 97, 116
Sau96I GGNCC 1 cut(s) 229
ScrFI CCNGG 2 cut(s) 29, 267
SetI ASST 5 cut(s) 84, 126, 149, 156, 260
SinI GGWCC 1 cut(s) 229
Sse9I AATT 3 cut(s) 130, 159, 223
SsiI CCGC 3 cut(s) 96, 116, 295
SspMI CTAG 1 cut(s) 324
StyD4I CCNGG 2 cut(s) 27, 265
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 1 cut(s) 149
TaqI TCGA 2 cut(s) 150, 184
TaqII GACCGA 1 cut(s) 77
TasI AATT 3 cut(s) 130, 159, 223
TauI GCSGC 2 cut(s) 99, 118
TscAI CASTG 1 cut(s) 349
TseI GCWGC 1 cut(s) 93
TspDTI ATGAA 1 cut(s) 236
TspGWI ACGGA 1 cut(s) 124
TspRI CASTG 1 cut(s) 349
VpaK11BI GGWCC 1 cut(s) 229
XapI RAATTY 3 cut(s) 130, 159, 223
XmiI GTMKAC 1 cut(s) 260
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.