RLG00000004468

Oxygen-independent coproporphyrinogen-III oxidase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009349
Physical Location & Seq
Reverse (-)
59632151 .. 59633293
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004468

Sequence Viewer

Length: 471 bp
ATGAAAGAGTACAATGGTTATGTGGGGAACTTGGAAAATGGGTTGGTGGATTGTGGTGGGAGTGAATATATTGATGCTAAGGACATGGCCATGGATGCTGTTATGCTCTTTTTTAGAACTTCAACAGGTCTGGATTTGAAGTCTTTTGGAGAGGCGTATGGTAGCTCCCTTGTTGTTTCTCTTTGCGAGGTTTATAAACCTTCTGTTGAAAGTGGGCATGTGGTTATCTTAGATGAGCAGAGAAGGGCCATAACTGTAGATGAGTTGTATTCCTTCAAACTAAACGAAGAAGAGAATGAAAAAAGTCTTGCATACATTCCGGATGGTTTCCTTTTATCGAATGAATTGATATCCCTTGCATTTGCAGTTCATTCTGGTGCCACATACTCCTATGCGTGTCAACATGCAGATTTACAACGAAATGTGTTCGAGGAGAAGTTTGGGCATGCAATCCTTGATCTGCTCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HemN_C Radical_SAM

Protein Analysis

157

Amino Acids

17.33

Weight (kDa)

4.47

Isoelectric Point (pI)

25.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 195
AccB1I GGYRCC 1 cut(s) 377
AccIII TCCGGA 1 cut(s) 319
AcoI YGGCCR 1 cut(s) 87
AfaI GTAC 1 cut(s) 11
AgsI TTSAA 4 cut(s) 123, 139, 209, 277
AluBI AGCT 1 cut(s) 165
AluI AGCT 1 cut(s) 165
Aor13HI TCCGGA 1 cut(s) 319
AoxI GGCC 2 cut(s) 87, 246
AspS9I GGNCC 1 cut(s) 246
BalI TGGCCA 1 cut(s) 89
BanI GGYRCC 1 cut(s) 377
BccI CCATC 1 cut(s) 317
BfmI CTRYAG 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 246
BmiI GGNNCC 1 cut(s) 379
BmsI GCATC 2 cut(s) 64, 85
Bpu10I CCTNAGC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 90
BsaWI WCCGGW 1 cut(s) 319
BseAI TCCGGA 1 cut(s) 319
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 2 cut(s) 100, 328
BseRI GAGGAG 1 cut(s) 446
BshFI GGCC 2 cut(s) 89, 248
BshNI GGYRCC 1 cut(s) 377
BsiSI CCGG 1 cut(s) 320
BsnI GGCC 2 cut(s) 89, 248
Bsp13I TCCGGA 1 cut(s) 319
Bsp143I GATC 1 cut(s) 457
Bsp19I CCATGG 1 cut(s) 90
BspANI GGCC 2 cut(s) 89, 248
BspEI TCCGGA 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 379
BspT107I GGYRCC 1 cut(s) 377
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 1 cut(s) 457
BssT1I CCWWGG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 256
Bst6I CTCTTC 1 cut(s) 285
BstC8I GCNNGC 1 cut(s) 447
BstDEI CTNAG 2 cut(s) 78, 229
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 2 cut(s) 100, 328
BstKTI GATC 1 cut(s) 460
BstMBI GATC 1 cut(s) 457
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNSI RCATGY 3 cut(s) 221, 407, 449
BstSFI CTRYAG 1 cut(s) 255
BsuRI GGCC 2 cut(s) 89, 248
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 2 cut(s) 100, 328
Cac8I GCNNGC 1 cut(s) 447
Cfr13I GGNCC 1 cut(s) 246
Csp6I GTAC 1 cut(s) 10
CviAII CATG 5 cut(s) 85, 91, 218, 404, 446
CviJI RGCY 3 cut(s) 89, 165, 248
CviKI_1 RGCY 3 cut(s) 89, 165, 248
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 2 cut(s) 78, 229
DpnI GATC 1 cut(s) 459
DpnII GATC 1 cut(s) 457
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco130I CCWWGG 1 cut(s) 90
Eco32I GATATC 1 cut(s) 351
EcoRV GATATC 1 cut(s) 351
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 5 cut(s) 88, 94, 221, 407, 449
FatI CATG 5 cut(s) 84, 90, 217, 403, 445
FokI GGATG 2 cut(s) 107, 335
HaeIII GGCC 2 cut(s) 89, 248
HapII CCGG 1 cut(s) 320
Hin1II CATG 5 cut(s) 88, 94, 221, 407, 449
HincII GTYRAC 1 cut(s) 401
HindII GTYRAC 1 cut(s) 401
HpaII CCGG 1 cut(s) 320
Hpy166II GTNNAC 1 cut(s) 401
Hpy188III TCNNGA 2 cut(s) 131, 320
Hpy8I GTNNAC 1 cut(s) 401
HpyAV CCTTC 3 cut(s) 210, 237, 283
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4V TGCA 5 cut(s) 311, 359, 365, 407, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 2 cut(s) 78, 229
Hsp92II CATG 5 cut(s) 88, 94, 221, 407, 449
Kpn2I TCCGGA 1 cut(s) 319
Kzo9I GATC 1 cut(s) 457
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 4 cut(s) 111, 116, 333, 360
LweI GCATC 2 cut(s) 64, 85
MalI GATC 1 cut(s) 459
MboI GATC 1 cut(s) 457
MboII GAAGA 2 cut(s) 299, 302
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 2 cut(s) 344, 466
MluNI TGGCCA 1 cut(s) 89
MnlI CCTC 3 cut(s) 145, 181, 424
Mox20I TGGCCA 1 cut(s) 89
MroI TCCGGA 1 cut(s) 319
MscI TGGCCA 1 cut(s) 89
MseI TTAA 1 cut(s) 469
MslI CAYNNNNRTG 2 cut(s) 89, 375
Msp20I TGGCCA 1 cut(s) 89
MspI CCGG 1 cut(s) 320
MwoI GCNNNNNNNGC 1 cut(s) 95
NcoI CCATGG 1 cut(s) 90
NdeII GATC 1 cut(s) 457
NlaIII CATG 5 cut(s) 88, 94, 221, 407, 449
NlaIV GGNNCC 1 cut(s) 379
NspI RCATGY 3 cut(s) 221, 407, 449
PaeI GCATGC 1 cut(s) 449
PsiI TTATAA 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 379
PspPI GGNCC 1 cut(s) 246
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
RseI CAYNNNNRTG 2 cut(s) 89, 375
SaqAI TTAA 1 cut(s) 469
Sau3AI GATC 1 cut(s) 457
Sau96I GGNCC 1 cut(s) 246
SetI ASST 4 cut(s) 130, 167, 192, 202
SfaNI GCATC 2 cut(s) 64, 85
SfcI CTRYAG 1 cut(s) 255
SmiMI CAYNNNNRTG 2 cut(s) 89, 375
SphI GCATGC 1 cut(s) 449
Sse9I AATT 2 cut(s) 344, 466
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 256
TaqI TCGA 2 cut(s) 338, 429
TasI AATT 2 cut(s) 344, 466
TatI WGTACW 1 cut(s) 9
Tru1I TTAA 1 cut(s) 469
Tru9I TTAA 1 cut(s) 469
TspDTI ATGAA 4 cut(s) 17, 312, 357, 359
XceI RCATGY 3 cut(s) 221, 407, 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.