Rroxscaffold_3G00263970

Oxygen-independent coproporphyrinogen-III oxidase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0009349
Physical Location & Seq
Reverse (-)
57772833 .. 57774324
1492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00263970.1

Sequence Viewer

Length: 1413 bp
ATGCTGAAGTCAACGTTCACACCCTTTTTCTCAACCATTCCCGCCAAACCAAGATTCCCAAAACCATTACCTTCCACCATTCTCAGAGCCTTCACACAAAGCGCACCACCTGTTCGACAAAATGCCTCACTCACCATTTTCCCACCGCCTACTTCCGCCTACGTCCACCTCCCCTTCTGCCGGAAACGCTGCCACTACTGTGACTTCACCATCATCGCTCTCGGCTCTTCTTCTTCTTCTTCAAACCAACCCGAAGACGACCCACGAATGGTGAATTATGTCCAGTTACTCTGCCGAGAAATCAATGCCACAAAAGCAGAATATAGGACCAACCCACCTCTGGAAACGGTCTTTTTCGGAGGCGGCACGCCTTCTCTTGTGCCACCAAAGCTTGTTTCTTCCATTTTGGAGACGTTGAGGTTGAAATTCGGGCTGAGCTTGGATGCTGAGATATCTATGGAAATGGACCCCGGGACTTTTGATGGTGAGAAACTGAAGGGAATGATGGAGTTGGGTGTGAATAGGGTGTCATTGGGAGTTCAGGCATTTCAAGAAGAGTTGTTGAGGTCTTGTGGGAGAGCACATGGTCTTAAGGAGGTTTATGAAGCTATTGAAATTGTTGGGTCATGTGGGGTTGAGAATTGGAGTATGGATCTTATCTCTTCTCTGCCTCACCAGACTCCAGAAATGTGGGAAGAGAGTTTGAGGCTAACAGTTGAAGCTTGCCCTCCCCATGTGTCTGTTTATGATTTGCAAGTGGAACAAGGCACCAAATTCGGAAGATTGTACACACCAGGTGAGTTCCCATTGCCTTCTGAAACACGGTCAGCTGAATTCTATAGAATGGCATCTCGGACGCTTTCTGATGCGGGTTATGAGCACTATGAAATTAGCAGCTATGGCAAGAAGGGGTATCAGTGCAAGCACAATCTTACTTACTGGAAGAACAAGCCTTTCTATGGTTTTGGCCTCGGCTCTGCTAGCCATGTTGGTGGTGTGAGGTTTTCGAGACCAAAAATGATGAAAGAGTACAATGGTTATGTGGAGAACTTGGAAAATGGGTTGGTGGATTGTGGTGGGAGTAAACATATTGATGTCAAGGACATGGCCATGGATGTTGTTATGCTCTCTCTTAGAACTTCAAGAGGTCTGGATTTGAAGTCTTTTGGAGAAGCGTATGGTAGCTCCCTTGTTGTCTCTCTTTGCGAGGTTTATAAACCTTATGTTGAAAGTGGGCATGTGGTTTTCTTAGATGAGCAGAGAAGGGCCATGACTGTAGATGAGTTGAACTCCTTCAAACTAAACGAAGAAGAGATCGAAAAAAGTCTTGCATATATCCGTCTAAGTGATCCGGATGGTTTCCTTTTATCGAATGAATTGATATCACTTGCATTTGCAGTTGTATCTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HemN_C Radical_SAM

Protein Analysis

470

Amino Acids

52.48

Weight (kDa)

5.79

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Radical_SAM PF04055 54 - 237 1e-25 Radical SAM superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1215
AccB1I GGYRCC 1 cut(s) 767
AccIII TCCGGA 1 cut(s) 1351
AciI CCGC 5 cut(s) 42, 146, 156, 363, 869
AclI AACGTT 1 cut(s) 14
AclWI GGATC 2 cut(s) 660, 1343
AcoI YGGCCR 1 cut(s) 1107
AcsI RAATTY 3 cut(s) 425, 773, 833
AcuI CTGAAG 2 cut(s) 26, 515
AdeI CACNNNGTG 1 cut(s) 797
AfaI GTAC 2 cut(s) 788, 1031
AfiI CCNNNNNNNGG 4 cut(s) 180, 268, 340, 959
AflII CTTAAG 1 cut(s) 590
AjnI CCWGG 1 cut(s) 793
AjuI GAANNNNNNNTTGG 4 cut(s) 38, 70, 379, 411
AleI CACNNNNGTG 1 cut(s) 198
AluBI AGCT 7 cut(s) 391, 438, 608, 722, 830, 897, 1185
AluI AGCT 7 cut(s) 391, 438, 608, 722, 830, 897, 1185
Alw21I GWGCWC 2 cut(s) 583, 882
Alw26I GTCTC 3 cut(s) 404, 1003, 1201
AlwI GGATC 2 cut(s) 660, 1343
Ama87I CYCGRG 1 cut(s) 470
Aor13HI TCCGGA 1 cut(s) 1351
AoxI GGCC 3 cut(s) 967, 1107, 1266
ApeKI GCWGC 2 cut(s) 189, 894
ApoI RAATTY 3 cut(s) 425, 773, 833
Asp700I GAANNNNTTC 1 cut(s) 1292
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 3 cut(s) 327, 466, 1266
AsuC2I CCSGG 2 cut(s) 471, 472
AsuHPI GGTGA 6 cut(s) 124, 199, 283, 497, 665, 809
AsuNHI GCTAGC 1 cut(s) 980
AvaI CYCGRG 1 cut(s) 470
AvaII GGWCC 2 cut(s) 327, 466
BalI TGGCCA 1 cut(s) 1109
BanI GGYRCC 1 cut(s) 767
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 2 cut(s) 583, 882
BbvI GCAGC 2 cut(s) 176, 906
BccI CCATC 4 cut(s) 218, 476, 499, 1349
BcgI CGANNNNNNTGC 2 cut(s) 757, 791
BciT130I CCWGG 1 cut(s) 795
BcnI CCSGG 2 cut(s) 471, 472
BcoDI GTCTC 3 cut(s) 404, 1003, 1201
BfaI CTAG 1 cut(s) 981
BfmI CTRYAG 2 cut(s) 838, 1275
BfrI CTTAAG 1 cut(s) 590
BisI GCNGC 3 cut(s) 190, 364, 895
BlpI GCTNAGC 1 cut(s) 434
BlsI GCNGC 3 cut(s) 191, 365, 896
Bme1390I CCNGG 3 cut(s) 471, 472, 795
Bme18I GGWCC 2 cut(s) 327, 466
BmeT110I CYCGRG 1 cut(s) 470
BmgT120I GGNCC 3 cut(s) 327, 466, 1266
BmiI GGNNCC 2 cut(s) 468, 769
BmrFI CCNGG 3 cut(s) 471, 472, 795
BmsI GCATC 3 cut(s) 433, 856, 857
BmtI GCTAGC 1 cut(s) 984
BpiI GAAGAC 1 cut(s) 261
BplI GAGNNNNNCTC 2 cut(s) 1274, 1306
BpmI CTGGAG 1 cut(s) 666
Bpu1102I GCTNAGC 1 cut(s) 434
BpuMI CCSGG 2 cut(s) 471, 472
BsaI GGTCTC 1 cut(s) 1003
BsaJI CCNNGG 4 cut(s) 469, 470, 970, 1110
BsaWI WCCGGW 1 cut(s) 1351
Bsc4I CCNNNNNNNGG 4 cut(s) 180, 268, 340, 959
Bse1I ACTGG 2 cut(s) 283, 944
Bse3DI GCAATG 1 cut(s) 806
BseAI TCCGGA 1 cut(s) 1351
BseBI CCWGG 1 cut(s) 795
BseDI CCNNGG 4 cut(s) 469, 470, 970, 1110
BseGI GGATG 3 cut(s) 448, 1120, 1360
BseLI CCNNNNNNNGG 4 cut(s) 180, 268, 340, 959
BseMI GCAATG 1 cut(s) 806
BseMII CTCAG 3 cut(s) 97, 425, 438
BseNI ACTGG 2 cut(s) 283, 944
BseXI GCAGC 2 cut(s) 176, 906
BshFI GGCC 3 cut(s) 969, 1109, 1268
BshNI GGYRCC 1 cut(s) 767
BsiHKAI GWGCWC 2 cut(s) 583, 882
BsiHKCI CYCGRG 1 cut(s) 470
BsiSI CCGG 3 cut(s) 181, 471, 1352
BslFI GGGAC 1 cut(s) 487
BslI CCNNNNNNNGG 4 cut(s) 180, 268, 340, 959
BsmAI GTCTC 3 cut(s) 404, 1003, 1201
BsmBI CGTCTC 1 cut(s) 404
BsmFI GGGAC 1 cut(s) 487
BsnI GGCC 3 cut(s) 969, 1109, 1268
Bso31I GGTCTC 1 cut(s) 1003
BsoBI CYCGRG 1 cut(s) 470
Bsp1286I GDGCHC 2 cut(s) 583, 882
Bsp13I TCCGGA 1 cut(s) 1351
Bsp1407I TGTACA 1 cut(s) 786
Bsp143I GATC 3 cut(s) 652, 1314, 1348
Bsp1720I GCTNAGC 1 cut(s) 434
Bsp19I CCATGG 1 cut(s) 1110
BspACI CCGC 5 cut(s) 42, 146, 156, 363, 869
BspANI GGCC 3 cut(s) 969, 1109, 1268
BspCNI CTCAG 3 cut(s) 96, 426, 439
BspEI TCCGGA 1 cut(s) 1351
BspLI GGNNCC 2 cut(s) 468, 769
BspOI GCTAGC 1 cut(s) 984
BspPI GGATC 2 cut(s) 660, 1343
BspQI GCTCTTC 1 cut(s) 232
BspT107I GGYRCC 1 cut(s) 767
BspTI CTTAAG 1 cut(s) 590
BspTNI GGTCTC 1 cut(s) 1003
BsrDI GCAATG 1 cut(s) 806
BsrGI TGTACA 1 cut(s) 786
BsrI ACTGG 2 cut(s) 283, 944
BssECI CCNNGG 4 cut(s) 469, 470, 970, 1110
BssMI GATC 3 cut(s) 652, 1314, 1348
BssT1I CCWWGG 1 cut(s) 1110
Bst2UI CCWGG 1 cut(s) 795
Bst4CI ACNGT 5 cut(s) 200, 349, 715, 825, 1276
Bst6I CTCTTC 5 cut(s) 232, 549, 667, 690, 1305
BstAFI CTTAAG 1 cut(s) 590
BstAUI TGTACA 1 cut(s) 786
BstC8I GCNNGC 4 cut(s) 368, 724, 923, 982
BstDEI CTNAG 6 cut(s) 83, 434, 447, 1133, 1249, 1343
BstDSI CCRYGG 1 cut(s) 1110
BstF5I GGATG 3 cut(s) 448, 1120, 1360
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 3 cut(s) 655, 1317, 1351
BstMAI GTCTC 3 cut(s) 404, 1003, 1201
BstMBI GATC 3 cut(s) 652, 1314, 1348
BstMWI GCNNNNNNNGC 5 cut(s) 186, 314, 388, 900, 981
BstNI CCWGG 1 cut(s) 795
BstNSI RCATGY 1 cut(s) 1241
BstSCI CCNGG 3 cut(s) 469, 470, 793
BstSFI CTRYAG 2 cut(s) 838, 1275
BstV1I GCAGC 2 cut(s) 176, 906
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 652
BstXI CCANNNNNNTGG 2 cut(s) 690, 992
BstYI RGATCY 1 cut(s) 652
BsuRI GGCC 3 cut(s) 969, 1109, 1268
BtgI CCRYGG 1 cut(s) 1110
BtgZI GCGATG 1 cut(s) 199
BtsCI GGATG 3 cut(s) 448, 1120, 1360
BtsIMutI CAGTG 1 cut(s) 923
Cac8I GCNNGC 4 cut(s) 368, 724, 923, 982
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 3 cut(s) 327, 466, 1266
Cfr9I CCCGGG 1 cut(s) 470
CseI GACGC 1 cut(s) 865
CsiI ACCWGGT 1 cut(s) 793
Csp6I GTAC 2 cut(s) 787, 1030
CviAII CATG 8 cut(s) 584, 627, 734, 986, 1105, 1111, 1238, 1270
CviQI GTAC 2 cut(s) 787, 1030
DdeI CTNAG 6 cut(s) 83, 434, 447, 1133, 1249, 1343
DpnI GATC 3 cut(s) 654, 1316, 1350
DpnII GATC 3 cut(s) 652, 1314, 1348
DraIII CACNNNGTG 1 cut(s) 797
EaeI YGGCCR 1 cut(s) 1107
Eam1104I CTCTTC 5 cut(s) 232, 549, 667, 690, 1305
EarI CTCTTC 5 cut(s) 232, 549, 667, 690, 1305
EciI GGCGGA 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 1110
Eco31I GGTCTC 1 cut(s) 1003
Eco32I GATATC 2 cut(s) 453, 1383
Eco47I GGWCC 2 cut(s) 327, 466
Eco57I CTGAAG 2 cut(s) 26, 515
Eco88I CYCGRG 1 cut(s) 470
EcoRI GAATTC 1 cut(s) 833
EcoRII CCWGG 1 cut(s) 793
EcoRV GATATC 2 cut(s) 453, 1383
EcoT14I CCWWGG 1 cut(s) 1110
ErhI CCWWGG 1 cut(s) 1110
Esp3I CGTCTC 1 cut(s) 404
FaeI CATG 8 cut(s) 587, 630, 737, 989, 1108, 1114, 1241, 1273
FaqI GGGAC 1 cut(s) 487
FatI CATG 8 cut(s) 583, 626, 733, 985, 1104, 1110, 1237, 1269
FauI CCCGC 2 cut(s) 49, 862
Fnu4HI GCNGC 3 cut(s) 190, 364, 895
FokI GGATG 3 cut(s) 455, 1127, 1367
Fsp4HI GCNGC 3 cut(s) 190, 364, 895
FspBI CTAG 1 cut(s) 981
GlaI GCGC 1 cut(s) 103
GluI GCNGC 3 cut(s) 190, 364, 895
GsuI CTGGAG 1 cut(s) 666
HaeIII GGCC 3 cut(s) 969, 1109, 1268
HapII CCGG 3 cut(s) 181, 471, 1352
HgaI GACGC 1 cut(s) 865
HhaI GCGC 1 cut(s) 104
Hin1II CATG 8 cut(s) 587, 630, 737, 989, 1108, 1114, 1241, 1273
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 2 cut(s) 389, 720
HinfI GANTC 2 cut(s) 54, 679
HpaII CCGG 3 cut(s) 181, 471, 1352
HphI GGTGA 6 cut(s) 124, 199, 283, 497, 665, 809
Hpy166II GTNNAC 5 cut(s) 12, 18, 166, 789, 1085
Hpy188I TCNGA 6 cut(s) 86, 359, 779, 817, 855, 865
Hpy188III TCNNGA 7 cut(s) 341, 551, 683, 1008, 1143, 1151, 1352
Hpy8I GTNNAC 5 cut(s) 12, 18, 166, 789, 1085
HpyAV CCTTC 9 cut(s) 81, 100, 184, 381, 490, 822, 901, 1257, 1303
HpyCH4III ACNGT 5 cut(s) 200, 349, 715, 825, 1276
HpyCH4IV ACGT 3 cut(s) 14, 162, 413
HpyCH4V TGCA 5 cut(s) 754, 921, 1331, 1391, 1397
HpyF10VI GCNNNNNNNGC 5 cut(s) 186, 314, 388, 900, 981
HpyF3I CTNAG 6 cut(s) 83, 434, 447, 1133, 1249, 1343
HpySE526I ACGT 3 cut(s) 14, 162, 413
Hsp92II CATG 8 cut(s) 587, 630, 737, 989, 1108, 1114, 1241, 1273
HspAI GCGC 1 cut(s) 102
Kpn2I TCCGGA 1 cut(s) 1351
Kzo9I GATC 3 cut(s) 652, 1314, 1348
LguI GCTCTTC 1 cut(s) 232
LmnI GCTCC 1 cut(s) 1190
Lsp1109I GCAGC 2 cut(s) 176, 906
LweI GCATC 3 cut(s) 433, 856, 857
MabI ACCWGGT 1 cut(s) 793
MaeI CTAG 1 cut(s) 981
MaeII ACGT 3 cut(s) 14, 162, 413
MaeIII GTNAC 2 cut(s) 200, 285
MalI GATC 3 cut(s) 654, 1316, 1350
MboI GATC 3 cut(s) 652, 1314, 1348
MflI RGATCY 1 cut(s) 652
MhlI GDGCHC 2 cut(s) 583, 882
MlsI TGGCCA 1 cut(s) 1109
MluCI AATT 8 cut(s) 274, 425, 615, 640, 773, 833, 888, 1376
MluNI TGGCCA 1 cut(s) 1109
MlyI GAGTC 1 cut(s) 673
Mox20I TGGCCA 1 cut(s) 1109
MroI TCCGGA 1 cut(s) 1351
MroXI GAANNNNTTC 1 cut(s) 1292
MscI TGGCCA 1 cut(s) 1109
MseI TTAA 1 cut(s) 591
MslI CAYNNNNRTG 4 cut(s) 198, 990, 1092, 1109
Msp20I TGGCCA 1 cut(s) 1109
MspA1I CMGCKG 1 cut(s) 830
MspCI CTTAAG 1 cut(s) 590
MspI CCGG 3 cut(s) 181, 471, 1352
MspR9I CCNGG 3 cut(s) 471, 472, 795
MvaI CCWGG 1 cut(s) 795
MwoI GCNNNNNNNGC 5 cut(s) 186, 314, 388, 900, 981
NciI CCSGG 2 cut(s) 471, 472
NcoI CCATGG 1 cut(s) 1110
NdeII GATC 3 cut(s) 652, 1314, 1348
NheI GCTAGC 1 cut(s) 980
NlaIII CATG 8 cut(s) 587, 630, 737, 989, 1108, 1114, 1241, 1273
NlaIV GGNNCC 2 cut(s) 468, 769
NmeAIII GCCGAG 3 cut(s) 201, 320, 951
NmuCI GTSAC 1 cut(s) 200
NspI RCATGY 1 cut(s) 1241
OliI CACNNNNGTG 1 cut(s) 198
PciSI GCTCTTC 1 cut(s) 232
PdmI GAANNNNTTC 1 cut(s) 1292
PfeI GAWTC 1 cut(s) 54
PkrI GCNGC 3 cut(s) 191, 365, 896
PleI GAGTC 1 cut(s) 673
PpsI GAGTC 1 cut(s) 673
PsiI TTATAA 1 cut(s) 1215
Psp1406I AACGTT 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 793
PspGI CCWGG 1 cut(s) 793
PspN4I GGNNCC 2 cut(s) 468, 769
PspPI GGNCC 3 cut(s) 327, 466, 1266
PsuI RGATCY 1 cut(s) 652
PvuII CAGCTG 1 cut(s) 830
RsaI GTAC 2 cut(s) 788, 1031
RsaNI GTAC 2 cut(s) 787, 1030
RseI CAYNNNNRTG 4 cut(s) 198, 990, 1092, 1109
SapI GCTCTTC 1 cut(s) 232
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 3 cut(s) 190, 364, 895
Sau3AI GATC 3 cut(s) 652, 1314, 1348
Sau96I GGNCC 3 cut(s) 327, 466, 1266
SchI GAGTC 1 cut(s) 673
ScrFI CCNGG 3 cut(s) 471, 472, 795
SduI GDGCHC 2 cut(s) 583, 882
SexAI ACCWGGT 1 cut(s) 793
SfaNI GCATC 3 cut(s) 433, 856, 857
SfcI CTRYAG 2 cut(s) 838, 1275
SinI GGWCC 2 cut(s) 327, 466
SmaI CCCGGG 1 cut(s) 472
SmiMI CAYNNNNRTG 4 cut(s) 198, 990, 1092, 1109
SmlI CTYRAG 1 cut(s) 590
SmoI CTYRAG 1 cut(s) 590
Sse9I AATT 8 cut(s) 274, 425, 615, 640, 773, 833, 888, 1376
SsiI CCGC 5 cut(s) 42, 146, 156, 363, 869
SspMI CTAG 1 cut(s) 981
StyD4I CCNGG 3 cut(s) 469, 470, 793
StyI CCWWGG 1 cut(s) 1110
TaaI ACNGT 5 cut(s) 200, 349, 715, 825, 1276
TaiI ACGT 3 cut(s) 17, 165, 416
TaqI TCGA 4 cut(s) 115, 1007, 1317, 1370
TasI AATT 8 cut(s) 274, 425, 615, 640, 773, 833, 888, 1376
TatI WGTACW 2 cut(s) 786, 1029
TauI GCSGC 1 cut(s) 366
TfiI GAWTC 1 cut(s) 54
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TscAI CASTG 1 cut(s) 923
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 2 cut(s) 189, 894
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 4 cut(s) 618, 900, 1037, 1389
TspGWI ACGGA 2 cut(s) 1328, 1398
TspMI CCCGGG 1 cut(s) 470
TspRI CASTG 1 cut(s) 923
Vha464I CTTAAG 1 cut(s) 590
VpaK11BI GGWCC 2 cut(s) 327, 466
XapI RAATTY 3 cut(s) 425, 773, 833
XceI RCATGY 1 cut(s) 1241
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
XmaI CCCGGG 1 cut(s) 470
XmnI GAANNNNTTC 1 cut(s) 1292
XspI CTAG 1 cut(s) 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.