Prupe.5G157200_v2.0.a1

Oxygen-independent coproporphyrinogen-III oxidase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0009349
Physical Location & Seq
Forward (+)
13971173 .. 13973315
2143 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G157200.1

Sequence Viewer

Length: 1413 bp
ATGCTTAAATCAAGCTTCACTCCAATTTTCTCATCCCTTCCCGCCAAACCGTTATCGCCAAAACCACTGCCTAACGCTATCTTTAGCTGCTTCACACACACTGCGCCAACTGTTCGTCAAAATGCCTCACCCAACACCCCCACCACTATTCTTCCACCTCCTACTTCCGCTTACATCCACCTCCCTTTCTGCCGAAAGCGCTGTCACTACTGTGACTTCACAATCGTCGCTCTGGGCTCTTCTTCCAACCAAACCGAGGACGACCCGCGAATGATCAACTACGTTCAATTACTTTGCCGAGAAATCAATGCAATGAAAGCCGAAAATAAGGCCAACCCGCCTCTGGAAACGGTCTTTTTCGGGGGCGGCACGCCTTCTCTTGTGCCACCCAAGCTTGTTTCTTCCATTTTGGATACGTTGAGGTTGAAATTTGGGTTGAGTTCGGACTCTGAGATATCTATGGAAATGGACCCTGGGACTTTTGATGCTAAGAAAATGAAGGACATGATGGAGTTGGGTGTGAACAGGGTGTCTTTGGGAGTTCAGGCATTTCAAGAAGAGTTGTTGAAAGCTTGTGGTAGAGCACATGGTCTTAGGGAGGTTTATGAGGCCATTGAGATTGTTGGGTCATGTGGGGTTGAGAATTGGAGTATGGATATTATCTCTTCTCTGCCTCACCAGACCCCAGAAATGTGGGAAGAGAGTTTGAGGCTAACTGTTGAAGCTTGTCCTACCCATGTGTCTGTATATGATTTGCAAGTGGAGCAAGGCACAAAATTTGGATTGTTGTACACACCAGGGGAGTTCCCATTGCCGTCGGAAACACGGTCATCTGAGTTCTATAGGATGGCATCAAGGACGCTTTCTGATGCGGGTTATAACCACTATGAAATAAGCAGTTACTGCAAGAGTGGATATCATTGCAAACACAATCTTACTTATTGGAAGAACAAACCTTTCTATGCTTTTGGCCTTGGCTCTGCTAGCTACGTTGATGGTGTGAGGTTTTCAAGGCCAAAAAGGATGAAAGAGTACACGGGTTATGTGGAGAATTTGGAAAATGGGTTGGTGGATAGCTGTGAGAGTAATCGTTCTGCTCAGGACATGGCCACGGATGTTCTCATGCTCTCTCTTAGAACTTCAAGAGGTCTGGATTTGAAGTCGTTTGGAGAAGAATATGGAAGCTCTCTTGTTCTCGCTCTCTGCAAGGCCTATAAACCTTATGTTGAAAGTGGGCATGTGGTTTTCTTGGATGAGCATCGAAGGGCCATGGCTGCAGATGAACTCAATGCCTTGCTAGTAAACGAGGACAAGATTGAAAGAAGTCCTGCCTACATTCGTCTTAGTGATCCGGATGGTTTTCTTTTATCGAATGAATTGATATCGCTTGCATTTGCGGTTGTAGCTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HemN_C Radical_SAM

Protein Analysis

471

Amino Acids

52.32

Weight (kDa)

5.74

Isoelectric Point (pI)

52.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 879
AccII CGCG 1 cut(s) 268
AccIII TCCGGA 1 cut(s) 1351
AciI CCGC 7 cut(s) 42, 168, 266, 338, 366, 872, 1397
AclWI GGATC 1 cut(s) 1343
AcoI YGGCCR 1 cut(s) 1107
AcsI RAATTY 3 cut(s) 428, 776, 1051
AfaI GTAC 2 cut(s) 791, 1034
AfeI AGCGCT 1 cut(s) 200
AfiI CCNNNNNNNGG 2 cut(s) 256, 343
AjnI CCWGG 2 cut(s) 472, 796
AleI CACNNNNGTG 1 cut(s) 210
AluBI AGCT 9 cut(s) 15, 87, 394, 572, 725, 987, 1077, 1185, 1406
AluI AGCT 9 cut(s) 15, 87, 394, 572, 725, 987, 1077, 1185, 1406
Alw21I GWGCWC 1 cut(s) 586
AlwI GGATC 1 cut(s) 1343
AlwNI CAGNNNCTG 1 cut(s) 903
Aor13HI TCCGGA 1 cut(s) 1351
Aor51HI AGCGCT 1 cut(s) 200
AoxI GGCC 7 cut(s) 330, 609, 970, 1013, 1107, 1209, 1266
ApeKI GCWGC 2 cut(s) 87, 1274
ApoI RAATTY 3 cut(s) 428, 776, 1051
ArsI GACNNNNNNTTYG 2 cut(s) 187, 219
AspLEI GCGC 2 cut(s) 106, 201
AspS9I GGNCC 2 cut(s) 469, 1266
AsuHPI GGTGA 2 cut(s) 120, 668
AsuNHI GCTAGC 1 cut(s) 983
AvaII GGWCC 1 cut(s) 469
BalI TGGCCA 1 cut(s) 1109
BanII GRGCYC 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 586
BbvI GCAGC 2 cut(s) 74, 1261
BccI CCATC 4 cut(s) 502, 841, 989, 1349
BceAI ACGGC 1 cut(s) 799
BciT130I CCWGG 2 cut(s) 474, 798
BciVI GTATCC 1 cut(s) 406
BclI TGATCA 1 cut(s) 273
BfaI CTAG 2 cut(s) 984, 1298
BfmI CTRYAG 2 cut(s) 841, 1275
BfoI RGCGCY 1 cut(s) 202
BfuI GTATCC 1 cut(s) 406
BisI GCNGC 3 cut(s) 88, 367, 1275
BlsI GCNGC 3 cut(s) 89, 368, 1276
Bme1390I CCNGG 2 cut(s) 474, 798
Bme18I GGWCC 1 cut(s) 469
BmgT120I GGNCC 2 cut(s) 469, 1266
BmiI GGNNCC 1 cut(s) 471
BmrFI CCNGG 2 cut(s) 474, 798
BmsI GCATC 4 cut(s) 475, 859, 860, 1267
BmtI GCTAGC 1 cut(s) 987
Bpu10I CCTNAGC 1 cut(s) 1098
BsaBI GATNNNNATC 1 cut(s) 1257
BsaJI CCNNGG 7 cut(s) 255, 472, 473, 797, 973, 1110, 1269
BsaWI WCCGGW 1 cut(s) 1351
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 343
Bse3DI GCAATG 3 cut(s) 318, 809, 919
Bse8I GATNNNNATC 1 cut(s) 1257
BseAI TCCGGA 1 cut(s) 1351
BseBI CCWGG 2 cut(s) 474, 798
BseDI CCNNGG 7 cut(s) 255, 472, 473, 797, 973, 1110, 1269
BseGI GGATG 7 cut(s) 32, 174, 852, 1029, 1120, 1258, 1360
BseJI GATNNNNATC 1 cut(s) 1257
BseLI CCNNNNNNNGG 2 cut(s) 256, 343
BseMI GCAATG 3 cut(s) 318, 809, 919
BseMII CTCAG 3 cut(s) 441, 825, 1112
BseXI GCAGC 2 cut(s) 74, 1261
Bsh1236I CGCG 1 cut(s) 268
BshFI GGCC 7 cut(s) 332, 611, 972, 1015, 1109, 1211, 1268
BsiHKAI GWGCWC 1 cut(s) 586
BsiSI CCGG 1 cut(s) 1352
BslFI GGGAC 1 cut(s) 490
BslI CCNNNNNNNGG 2 cut(s) 256, 343
BsmFI GGGAC 1 cut(s) 490
BsnI GGCC 7 cut(s) 332, 611, 972, 1015, 1109, 1211, 1268
Bsp1286I GDGCHC 2 cut(s) 239, 586
Bsp13I TCCGGA 1 cut(s) 1351
Bsp1407I TGTACA 1 cut(s) 789
Bsp143I GATC 2 cut(s) 273, 1348
Bsp19I CCATGG 1 cut(s) 1269
BspACI CCGC 7 cut(s) 42, 168, 266, 338, 366, 872, 1397
BspANI GGCC 7 cut(s) 332, 611, 972, 1015, 1109, 1211, 1268
BspCNI CTCAG 3 cut(s) 442, 826, 1111
BspEI TCCGGA 1 cut(s) 1351
BspFNI CGCG 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 471
BspMAI CTGCAG 1 cut(s) 1279
BspOI GCTAGC 1 cut(s) 987
BspPI GGATC 1 cut(s) 1343
BspQI GCTCTTC 1 cut(s) 244
BsrDI GCAATG 3 cut(s) 318, 809, 919
BsrGI TGTACA 1 cut(s) 789
BssECI CCNNGG 7 cut(s) 255, 472, 473, 797, 973, 1110, 1269
BssMI GATC 2 cut(s) 273, 1348
BssT1I CCWWGG 2 cut(s) 973, 1269
Bst2UI CCWGG 2 cut(s) 474, 798
Bst4CI ACNGT 6 cut(s) 51, 112, 212, 352, 718, 828
Bst6I CTCTTC 4 cut(s) 244, 552, 670, 693
BstAPI GCANNNNNTGC 1 cut(s) 903
BstAUI TGTACA 1 cut(s) 789
BstC8I GCNNGC 3 cut(s) 371, 985, 1389
BstDEI CTNAG 7 cut(s) 450, 489, 593, 834, 1098, 1133, 1343
BstDSI CCRYGG 2 cut(s) 1110, 1269
BstF5I GGATG 7 cut(s) 32, 174, 852, 1029, 1120, 1258, 1360
BstFNI CGCG 1 cut(s) 268
BstH2I RGCGCY 1 cut(s) 202
BstHHI GCGC 2 cut(s) 106, 201
BstKTI GATC 2 cut(s) 276, 1351
BstMBI GATC 2 cut(s) 273, 1348
BstMWI GCNNNNNNNGC 8 cut(s) 198, 317, 391, 763, 903, 984, 1274, 1403
BstNI CCWGG 2 cut(s) 474, 798
BstNSI RCATGY 1 cut(s) 1241
BstSCI CCNGG 2 cut(s) 472, 796
BstSFI CTRYAG 2 cut(s) 841, 1275
BstUI CGCG 1 cut(s) 268
BstV1I GCAGC 2 cut(s) 74, 1261
BstXI CCANNNNNNTGG 1 cut(s) 693
BsuI GTATCC 1 cut(s) 406
BsuRI GGCC 7 cut(s) 332, 611, 972, 1015, 1109, 1211, 1268
BtgI CCRYGG 2 cut(s) 1110, 1269
BtsCI GGATG 7 cut(s) 32, 174, 852, 1029, 1120, 1258, 1360
BtsI GCAGTG 2 cut(s) 65, 99
BtsIMutI CAGTG 2 cut(s) 65, 99
Cac8I GCNNGC 3 cut(s) 371, 985, 1389
CaiI CAGNNNCTG 1 cut(s) 903
CfoI GCGC 2 cut(s) 106, 201
Cfr13I GGNCC 2 cut(s) 469, 1266
CseI GACGC 1 cut(s) 868
Csp6I GTAC 2 cut(s) 790, 1033
CviAII CATG 8 cut(s) 505, 587, 630, 737, 1105, 1123, 1238, 1270
CviQI GTAC 2 cut(s) 790, 1033
DdeI CTNAG 7 cut(s) 450, 489, 593, 834, 1098, 1133, 1343
DpnI GATC 2 cut(s) 275, 1350
DpnII GATC 2 cut(s) 273, 1348
EaeI YGGCCR 1 cut(s) 1107
Eam1104I CTCTTC 4 cut(s) 244, 552, 670, 693
EarI CTCTTC 4 cut(s) 244, 552, 670, 693
Eco130I CCWWGG 2 cut(s) 973, 1269
Eco147I AGGCCT 1 cut(s) 1211
Eco24I GRGCYC 1 cut(s) 239
Eco32I GATATC 3 cut(s) 456, 917, 1383
Eco47I GGWCC 1 cut(s) 469
Eco47III AGCGCT 1 cut(s) 200
EcoRII CCWGG 2 cut(s) 472, 796
EcoRV GATATC 3 cut(s) 456, 917, 1383
EcoT14I CCWWGG 2 cut(s) 973, 1269
EcoT38I GRGCYC 1 cut(s) 239
ErhI CCWWGG 2 cut(s) 973, 1269
FaeI CATG 8 cut(s) 508, 590, 633, 740, 1108, 1126, 1241, 1273
FaqI GGGAC 1 cut(s) 490
FatI CATG 8 cut(s) 504, 586, 629, 736, 1104, 1122, 1237, 1269
FauI CCCGC 4 cut(s) 49, 273, 345, 865
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 3 cut(s) 88, 367, 1275
FokI GGATG 7 cut(s) 19, 161, 859, 1036, 1127, 1265, 1367
FriOI GRGCYC 1 cut(s) 239
Fsp4HI GCNGC 3 cut(s) 88, 367, 1275
FspBI CTAG 2 cut(s) 984, 1298
GlaI GCGC 2 cut(s) 105, 200
GluI GCNGC 3 cut(s) 88, 367, 1275
HaeII RGCGCY 1 cut(s) 202
HaeIII GGCC 7 cut(s) 332, 611, 972, 1015, 1109, 1211, 1268
HapII CCGG 1 cut(s) 1352
HgaI GACGC 1 cut(s) 868
HhaI GCGC 2 cut(s) 106, 201
Hin1II CATG 8 cut(s) 508, 590, 633, 740, 1108, 1126, 1241, 1273
Hin6I GCGC 2 cut(s) 104, 199
HinP1I GCGC 2 cut(s) 104, 199
HindIII AAGCTT 4 cut(s) 13, 392, 570, 723
HinfI GANTC 1 cut(s) 446
HpaII CCGG 1 cut(s) 1352
HphI GGTGA 2 cut(s) 120, 668
Hpy166II GTNNAC 4 cut(s) 523, 792, 1035, 1303
Hpy188I TCNGA 5 cut(s) 445, 451, 820, 835, 868
Hpy188III TCNNGA 6 cut(s) 344, 554, 1100, 1143, 1151, 1352
Hpy8I GTNNAC 4 cut(s) 523, 792, 1035, 1303
Hpy99I CGWCG 2 cut(s) 230, 820
HpyAV CCTTC 4 cut(s) 47, 384, 493, 1257
HpyCH4III ACNGT 6 cut(s) 51, 112, 212, 352, 718, 828
HpyCH4IV ACGT 3 cut(s) 282, 416, 990
HpyCH4V TGCA 7 cut(s) 311, 757, 906, 924, 1206, 1277, 1391
HpyF10VI GCNNNNNNNGC 8 cut(s) 198, 317, 391, 763, 903, 984, 1274, 1403
HpyF3I CTNAG 7 cut(s) 450, 489, 593, 834, 1098, 1133, 1343
HpySE526I ACGT 3 cut(s) 282, 416, 990
Hsp92II CATG 8 cut(s) 508, 590, 633, 740, 1108, 1126, 1241, 1273
HspAI GCGC 2 cut(s) 104, 199
Kpn2I TCCGGA 1 cut(s) 1351
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 2 cut(s) 273, 1348
LguI GCTCTTC 1 cut(s) 244
LmnI GCTCC 2 cut(s) 763, 1411
Lsp1109I GCAGC 2 cut(s) 74, 1261
LweI GCATC 4 cut(s) 475, 859, 860, 1267
MaeI CTAG 2 cut(s) 984, 1298
MaeII ACGT 3 cut(s) 282, 416, 990
MaeIII GTNAC 3 cut(s) 203, 212, 899
MalI GATC 2 cut(s) 275, 1350
MboI GATC 2 cut(s) 273, 1348
MboII GAAGA 9 cut(s) 143, 231, 234, 393, 569, 657, 710, 958, 1184
MhlI GDGCHC 2 cut(s) 239, 586
MlsI TGGCCA 1 cut(s) 1109
MluCI AATT 7 cut(s) 24, 287, 428, 643, 776, 1051, 1376
MluNI TGGCCA 1 cut(s) 1109
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 2 cut(s) 270, 798
Mox20I TGGCCA 1 cut(s) 1109
MroI TCCGGA 1 cut(s) 1351
MscI TGGCCA 1 cut(s) 1109
MseI TTAA 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 210
Msp20I TGGCCA 1 cut(s) 1109
MspI CCGG 1 cut(s) 1352
MspR9I CCNGG 2 cut(s) 474, 798
MvaI CCWGG 2 cut(s) 474, 798
MvnI CGCG 1 cut(s) 268
MwoI GCNNNNNNNGC 8 cut(s) 198, 317, 391, 763, 903, 984, 1274, 1403
NcoI CCATGG 1 cut(s) 1269
NdeII GATC 2 cut(s) 273, 1348
NheI GCTAGC 1 cut(s) 983
NlaIII CATG 8 cut(s) 508, 590, 633, 740, 1108, 1126, 1241, 1273
NlaIV GGNNCC 1 cut(s) 471
NmeAIII GCCGAG 1 cut(s) 323
NmuCI GTSAC 2 cut(s) 203, 212
NspI RCATGY 1 cut(s) 1241
OliI CACNNNNGTG 1 cut(s) 210
PasI CCCWGGG 1 cut(s) 473
PceI AGGCCT 1 cut(s) 1211
PciSI GCTCTTC 1 cut(s) 244
PkrI GCNGC 3 cut(s) 89, 368, 1276
PleI GAGTC 1 cut(s) 440
PpsI GAGTC 1 cut(s) 440
PsiI TTATAA 1 cut(s) 879
Psp6I CCWGG 2 cut(s) 472, 796
PspGI CCWGG 2 cut(s) 472, 796
PspN4I GGNNCC 1 cut(s) 471
PspPI GGNCC 2 cut(s) 469, 1266
PstI CTGCAG 1 cut(s) 1279
PstNI CAGNNNCTG 1 cut(s) 903
RsaI GTAC 2 cut(s) 791, 1034
RsaNI GTAC 2 cut(s) 790, 1033
RseI CAYNNNNRTG 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 244
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 3 cut(s) 88, 367, 1275
Sau3AI GATC 2 cut(s) 273, 1348
Sau96I GGNCC 2 cut(s) 469, 1266
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 2 cut(s) 474, 798
SduI GDGCHC 2 cut(s) 239, 586
SfaNI GCATC 4 cut(s) 475, 859, 860, 1267
SfcI CTRYAG 2 cut(s) 841, 1275
SinI GGWCC 1 cut(s) 469
SmiMI CAYNNNNRTG 1 cut(s) 210
Sse9I AATT 7 cut(s) 24, 287, 428, 643, 776, 1051, 1376
SseBI AGGCCT 1 cut(s) 1211
SsiI CCGC 7 cut(s) 42, 168, 266, 338, 366, 872, 1397
SspMI CTAG 2 cut(s) 984, 1298
StuI AGGCCT 1 cut(s) 1211
StyD4I CCNGG 2 cut(s) 472, 796
StyI CCWWGG 2 cut(s) 973, 1269
TaaI ACNGT 6 cut(s) 51, 112, 212, 352, 718, 828
TaiI ACGT 3 cut(s) 285, 419, 993
TaqI TCGA 2 cut(s) 1261, 1370
TasI AATT 7 cut(s) 24, 287, 428, 643, 776, 1051, 1376
TatI WGTACW 2 cut(s) 789, 1032
TauI GCSGC 1 cut(s) 369
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 2 cut(s) 72, 106
TseFI GTSAC 2 cut(s) 203, 212
TseI GCWGC 2 cut(s) 87, 1274
Tsp45I GTSAC 2 cut(s) 203, 212
TspDTI ATGAA 6 cut(s) 329, 512, 903, 1040, 1296, 1389
TspGWI ACGGA 1 cut(s) 1127
TspRI CASTG 2 cut(s) 72, 106
VpaK11BI GGWCC 1 cut(s) 469
XapI RAATTY 3 cut(s) 428, 776, 1051
XceI RCATGY 1 cut(s) 1241
XcmI CCANNNNNNNNNTGG 1 cut(s) 340
XspI CTAG 2 cut(s) 984, 1298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.