pycom06g14000

Oxygen-independent coproporphyrinogen-III oxidase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0009349
Physical Location & Seq
Forward (+)
18886005 .. 18886199
195 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g14000.1

Sequence Viewer

Length: 195 bp
ATGATGGAGTTGGGTGTGAATAGGGTGTCGTTGGGAGTTCAGGCGTTTCAAGAAGAGCCGCTGAAAGCTTGTGGGAGAGCTCATGGTGTTCGGGAGGTTTATGAGGCTATGGAGATTGTTGGGGAATGTGGGGTTGAGAATTGGAGCATGGATCTTATCTCTTCTCTGCCTTTCCAGACCCCGGAAATGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HemN_C Radical_SAM

Protein Analysis

65

Amino Acids

7.19

Weight (kDa)

4.43

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Radical_SAM PF04055 2 - 63 1.1e-08 Radical SAM superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 59
AclWI GGATC 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 181
AgsI TTSAA 1 cut(s) 50
AluBI AGCT 2 cut(s) 68, 80
AluI AGCT 2 cut(s) 68, 80
Alw21I GWGCWC 1 cut(s) 82
AlwI GGATC 1 cut(s) 159
AsuC2I CCSGG 1 cut(s) 182
BanII GRGCYC 1 cut(s) 82
Bbv12I GWGCWC 1 cut(s) 82
BcnI CCSGG 1 cut(s) 182
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
Bme1390I CCNGG 1 cut(s) 182
BmrFI CCNGG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 180
Bsc4I CCNNNNNNNGG 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 82
BsiSI CCGG 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 82
Bsp143I GATC 1 cut(s) 151
BspACI CCGC 1 cut(s) 59
BspPI GGATC 1 cut(s) 159
BspQI GCTCTTC 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 1 cut(s) 151
Bst6I CTCTTC 2 cut(s) 48, 166
BstKTI GATC 1 cut(s) 154
BstMBI GATC 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 180
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
CviAII CATG 2 cut(s) 83, 148
CviJI RGCY 4 cut(s) 58, 68, 80, 107
CviKI_1 RGCY 4 cut(s) 58, 68, 80, 107
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
Eam1104I CTCTTC 2 cut(s) 48, 166
EarI CTCTTC 2 cut(s) 48, 166
Ecl136II GAGCTC 1 cut(s) 80
Eco24I GRGCYC 1 cut(s) 82
Eco53kI GAGCTC 1 cut(s) 80
EcoICRI GAGCTC 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 82
FaeI CATG 2 cut(s) 86, 151
FaiI YATR 4 cut(s) 84, 102, 110, 149
FatI CATG 2 cut(s) 82, 147
Fnu4HI GCNGC 1 cut(s) 59
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 1 cut(s) 59
GluI GCNGC 1 cut(s) 59
HapII CCGG 1 cut(s) 182
Hin1II CATG 2 cut(s) 86, 151
HindIII AAGCTT 1 cut(s) 66
HpaII CCGG 1 cut(s) 182
Hpy188III TCNNGA 3 cut(s) 50, 92, 175
Hsp92II CATG 2 cut(s) 86, 151
Kzo9I GATC 1 cut(s) 151
LguI GCTCTTC 1 cut(s) 48
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 2 cut(s) 26, 188
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 2 cut(s) 65, 153
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 1 cut(s) 139
MnlI CCTC 2 cut(s) 88, 97
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 182
NciI CCSGG 1 cut(s) 182
NdeII GATC 1 cut(s) 151
NlaIII CATG 2 cut(s) 86, 151
PciSI GCTCTTC 1 cut(s) 48
PkrI GCNGC 1 cut(s) 60
Psp124BI GAGCTC 1 cut(s) 82
PsuI RGATCY 1 cut(s) 151
SacI GAGCTC 1 cut(s) 82
SapI GCTCTTC 1 cut(s) 48
SatI GCNGC 1 cut(s) 59
Sau3AI GATC 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 1 cut(s) 82
SetI ASST 3 cut(s) 70, 82, 99
SgeI CNNG 7 cut(s) 53, 62, 81, 95, 104, 160, 187
Sse9I AATT 1 cut(s) 139
SsiI CCGC 1 cut(s) 59
SstI GAGCTC 1 cut(s) 82
StyD4I CCNGG 1 cut(s) 180
TasI AATT 1 cut(s) 139
TauI GCSGC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.