RLG00000004469

Oxygen-independent coproporphyrinogen-III oxidase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009349
Physical Location & Seq
Reverse (-)
59634784 .. 59636266
1483 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004469

Sequence Viewer

Length: 1404 bp
ATGCTGAAGTCAACGTTCACACCCTTTTTCTCAACCATTCCCGCCAAACCAAGATTCCCAAAACCATTACCTTCAACCATTCTCAGAGCCTTCACACAAAGCGCACCACCTGTTCGACAAAATGCCTCACTCACCATTTTCCCACCGCCTACTTCCGCCTACGTCCACCTCCCCTTCTGCCGGAAACGCTGCCACTACTGTGACTTCACCATCATCGCTCTCGGCTCTTCTTCTTCTTCAAACCAACCCGAAGACGACCCACGAATGGTGAACTATGTCCAGTTACTCTGCCGAGAAATCAATGCCACACAAGTTAAGACCAACCCACCTCTGGAAACGGTCTTTTTCGGAGGCGGCACGCCTTCTCTTGTGCCACCAAAGCTTGTTTCTTCCATTTTGGAGACATTGAGGTTGAAATTCGGGCTGAGCTTGGATGCTGAGATATCTATGGAAATGGACCCTGGGACTTTTGATGGTGAGAAGATGAAGGGAATGATGGAGTTGGGTGTGAATAGGGTGTCATTGGGAGTTCAGGCATTTCAAGAAGAGTTGTTGAAGTCTTGCGGGAGAGCACATGGTCTTAAGGAGATTTATGAAGCTATTGAGATTGTTGGCTCATGTGGGGTTGAGAATTGGAGTATGGACCTTATTTCTTCTCTGCCTCACCAGACTCCAGAAATGTGGGAAGAGAGTTTGAGGCTAACAGTCGAAGCTTGCCCTACCCATGTGTCTGTTTATGATTTGCAAGTGGAACAAGGCACCAAATTCGGAAGATTGTACACACCAGGTGAGTTCCCATTGCCTTCTGAAACACGGTCAGCTGAATTCTATAGAATGGCATCTCGGACGCTTTCTGATGCGGGTTATGAGCACTATGAAATTAGCAGCTATGGCAAGAAGGGGTATCAGTGCAAGCACAATCTTACTTACTGGAAGAACAAGCCTTTCTATGGTTTTGGCCTCGGCTCTGCTAGCCATGTTGGTGGTGTGAGGTTTTCGAGACCAAAGATGATGAAAGAGTACAATGGTTATGTGGAGAACTTGGAAAATGGGATGGTGAATTGTGGTGCGAGTAAATATATTGATGTCAAGGACATGGCCATGGATGCTGTTATGCTTTCTCTTAGAACTTCAAGAGGTCTGGATTTGAAGTCTTTTGGAGAAGCGTATGGTAGCTCCCTTGTTGTCTCTCTTTGCGAGGTTTATAAACCTTATGTTGAAAGTGGGCATGTGGTTTTCTTAGATGAGCAGAGAAGGGCCATGACTGTAGATGAGTTGAACTCCTTCAAACTAAACGAAGAAGAGATCGAAAAAAGTCTTGCATATATCCGTTTAAGTGATCCAGATGGTTTCCTTTTATCGAATGAATTGATATCACTTGCATTTGCAGTTGTATCTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HemN_C Radical_SAM

Protein Analysis

468

Amino Acids

52.15

Weight (kDa)

5.83

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Radical_SAM PF04055 54 - 234 3.9e-24 Radical SAM superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1206
AccB1I GGYRCC 1 cut(s) 758
AciI CCGC 6 cut(s) 42, 146, 156, 354, 564, 860
AclI AACGTT 1 cut(s) 14
AclWI GGATC 1 cut(s) 1334
AcoI YGGCCR 1 cut(s) 1098
AcsI RAATTY 3 cut(s) 416, 764, 824
AcuI CTGAAG 1 cut(s) 26
AdeI CACNNNGTG 1 cut(s) 788
AfaI GTAC 2 cut(s) 779, 1022
AfiI CCNNNNNNNGG 4 cut(s) 180, 265, 331, 950
AflII CTTAAG 1 cut(s) 581
AjnI CCWGG 2 cut(s) 460, 784
AjuI GAANNNNNNNTTGG 4 cut(s) 38, 70, 370, 402
AleI CACNNNNGTG 1 cut(s) 198
AluBI AGCT 7 cut(s) 382, 429, 599, 713, 821, 888, 1176
AluI AGCT 7 cut(s) 382, 429, 599, 713, 821, 888, 1176
Alw21I GWGCWC 2 cut(s) 574, 873
Alw26I GTCTC 3 cut(s) 395, 994, 1192
AlwI GGATC 1 cut(s) 1334
AoxI GGCC 3 cut(s) 958, 1098, 1257
ApeKI GCWGC 2 cut(s) 189, 885
ApoI RAATTY 3 cut(s) 416, 764, 824
Asp700I GAANNNNTTC 1 cut(s) 1283
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 3 cut(s) 457, 643, 1257
AsuHPI GGTGA 7 cut(s) 124, 199, 280, 488, 656, 800, 1069
AsuNHI GCTAGC 1 cut(s) 971
AvaII GGWCC 2 cut(s) 457, 643
BalI TGGCCA 1 cut(s) 1100
BanI GGYRCC 1 cut(s) 758
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 2 cut(s) 574, 873
BbvI GCAGC 2 cut(s) 176, 897
BccI CCATC 5 cut(s) 218, 467, 490, 1048, 1340
BcgI CGANNNNNNTGC 2 cut(s) 748, 782
BciT130I CCWGG 2 cut(s) 462, 786
BcoDI GTCTC 3 cut(s) 395, 994, 1192
BfaI CTAG 1 cut(s) 972
BfmI CTRYAG 2 cut(s) 829, 1266
BfrI CTTAAG 1 cut(s) 581
BisI GCNGC 3 cut(s) 190, 355, 886
BlpI GCTNAGC 1 cut(s) 425
BlsI GCNGC 3 cut(s) 191, 356, 887
Bme1390I CCNGG 2 cut(s) 462, 786
Bme18I GGWCC 2 cut(s) 457, 643
BmgT120I GGNCC 3 cut(s) 457, 643, 1257
BmiI GGNNCC 2 cut(s) 459, 760
BmrFI CCNGG 2 cut(s) 462, 786
BmsI GCATC 4 cut(s) 424, 847, 848, 1096
BmtI GCTAGC 1 cut(s) 975
BpiI GAAGAC 1 cut(s) 258
BplI GAGNNNNNCTC 2 cut(s) 1265, 1297
BpmI CTGGAG 1 cut(s) 657
Bpu1102I GCTNAGC 1 cut(s) 425
BsaI GGTCTC 1 cut(s) 994
BsaJI CCNNGG 4 cut(s) 460, 461, 961, 1101
Bsc4I CCNNNNNNNGG 4 cut(s) 180, 265, 331, 950
Bse1I ACTGG 2 cut(s) 280, 935
Bse3DI GCAATG 1 cut(s) 797
BseBI CCWGG 2 cut(s) 462, 786
BseDI CCNNGG 4 cut(s) 460, 461, 961, 1101
BseGI GGATG 3 cut(s) 439, 1059, 1111
BseLI CCNNNNNNNGG 4 cut(s) 180, 265, 331, 950
BseMI GCAATG 1 cut(s) 797
BseMII CTCAG 3 cut(s) 97, 416, 429
BseNI ACTGG 2 cut(s) 280, 935
BseXI GCAGC 2 cut(s) 176, 897
BshFI GGCC 3 cut(s) 960, 1100, 1259
BshNI GGYRCC 1 cut(s) 758
BsiHKAI GWGCWC 2 cut(s) 574, 873
BsiSI CCGG 1 cut(s) 181
BslFI GGGAC 1 cut(s) 478
BslI CCNNNNNNNGG 4 cut(s) 180, 265, 331, 950
BsmAI GTCTC 3 cut(s) 395, 994, 1192
BsmFI GGGAC 1 cut(s) 478
BsnI GGCC 3 cut(s) 960, 1100, 1259
Bso31I GGTCTC 1 cut(s) 994
Bsp1286I GDGCHC 2 cut(s) 574, 873
Bsp1407I TGTACA 1 cut(s) 777
Bsp143I GATC 2 cut(s) 1305, 1339
Bsp1720I GCTNAGC 1 cut(s) 425
Bsp19I CCATGG 1 cut(s) 1101
BspACI CCGC 6 cut(s) 42, 146, 156, 354, 564, 860
BspANI GGCC 3 cut(s) 960, 1100, 1259
BspCNI CTCAG 3 cut(s) 96, 417, 430
BspLI GGNNCC 2 cut(s) 459, 760
BspOI GCTAGC 1 cut(s) 975
BspPI GGATC 1 cut(s) 1334
BspQI GCTCTTC 1 cut(s) 232
BspT107I GGYRCC 1 cut(s) 758
BspTI CTTAAG 1 cut(s) 581
BspTNI GGTCTC 1 cut(s) 994
BsrDI GCAATG 1 cut(s) 797
BsrGI TGTACA 1 cut(s) 777
BsrI ACTGG 2 cut(s) 280, 935
BssECI CCNNGG 4 cut(s) 460, 461, 961, 1101
BssMI GATC 2 cut(s) 1305, 1339
BssT1I CCWWGG 1 cut(s) 1101
Bst2UI CCWGG 2 cut(s) 462, 786
Bst4CI ACNGT 5 cut(s) 200, 340, 706, 816, 1267
Bst6I CTCTTC 4 cut(s) 232, 540, 681, 1296
BstAFI CTTAAG 1 cut(s) 581
BstAUI TGTACA 1 cut(s) 777
BstC8I GCNNGC 4 cut(s) 359, 715, 914, 973
BstDEI CTNAG 5 cut(s) 83, 425, 438, 1124, 1240
BstDSI CCRYGG 1 cut(s) 1101
BstF5I GGATG 3 cut(s) 439, 1059, 1111
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 2 cut(s) 1308, 1342
BstMAI GTCTC 3 cut(s) 395, 994, 1192
BstMBI GATC 2 cut(s) 1305, 1339
BstMWI GCNNNNNNNGC 5 cut(s) 186, 379, 891, 972, 1106
BstNI CCWGG 2 cut(s) 462, 786
BstNSI RCATGY 1 cut(s) 1232
BstSCI CCNGG 2 cut(s) 460, 784
BstSFI CTRYAG 2 cut(s) 829, 1266
BstV1I GCAGC 2 cut(s) 176, 897
BstV2I GAAGAC 1 cut(s) 258
BstXI CCANNNNNNTGG 2 cut(s) 681, 983
BsuRI GGCC 3 cut(s) 960, 1100, 1259
BtgI CCRYGG 1 cut(s) 1101
BtgZI GCGATG 1 cut(s) 199
BtsCI GGATG 3 cut(s) 439, 1059, 1111
BtsIMutI CAGTG 1 cut(s) 914
Cac8I GCNNGC 4 cut(s) 359, 715, 914, 973
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 3 cut(s) 457, 643, 1257
CseI GACGC 1 cut(s) 856
CsiI ACCWGGT 1 cut(s) 784
Csp6I GTAC 2 cut(s) 778, 1021
CviAII CATG 8 cut(s) 575, 618, 725, 977, 1096, 1102, 1229, 1261
CviQI GTAC 2 cut(s) 778, 1021
DdeI CTNAG 5 cut(s) 83, 425, 438, 1124, 1240
DpnI GATC 2 cut(s) 1307, 1341
DpnII GATC 2 cut(s) 1305, 1339
DraIII CACNNNGTG 1 cut(s) 788
EaeI YGGCCR 1 cut(s) 1098
Eam1104I CTCTTC 4 cut(s) 232, 540, 681, 1296
EarI CTCTTC 4 cut(s) 232, 540, 681, 1296
EciI GGCGGA 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 1101
Eco31I GGTCTC 1 cut(s) 994
Eco32I GATATC 2 cut(s) 444, 1374
Eco47I GGWCC 2 cut(s) 457, 643
Eco57I CTGAAG 1 cut(s) 26
EcoRI GAATTC 1 cut(s) 824
EcoRII CCWGG 2 cut(s) 460, 784
EcoRV GATATC 2 cut(s) 444, 1374
EcoT14I CCWWGG 1 cut(s) 1101
ErhI CCWWGG 1 cut(s) 1101
FaeI CATG 8 cut(s) 578, 621, 728, 980, 1099, 1105, 1232, 1264
FaqI GGGAC 1 cut(s) 478
FatI CATG 8 cut(s) 574, 617, 724, 976, 1095, 1101, 1228, 1260
FauI CCCGC 3 cut(s) 49, 557, 853
Fnu4HI GCNGC 3 cut(s) 190, 355, 886
FokI GGATG 3 cut(s) 446, 1066, 1118
Fsp4HI GCNGC 3 cut(s) 190, 355, 886
FspBI CTAG 1 cut(s) 972
GlaI GCGC 1 cut(s) 103
GluI GCNGC 3 cut(s) 190, 355, 886
GsuI CTGGAG 1 cut(s) 657
HaeIII GGCC 3 cut(s) 960, 1100, 1259
HapII CCGG 1 cut(s) 181
HgaI GACGC 1 cut(s) 856
HhaI GCGC 1 cut(s) 104
Hin1II CATG 8 cut(s) 578, 621, 728, 980, 1099, 1105, 1232, 1264
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 2 cut(s) 380, 711
HinfI GANTC 2 cut(s) 54, 670
HpaII CCGG 1 cut(s) 181
HphI GGTGA 7 cut(s) 124, 199, 280, 488, 656, 800, 1069
Hpy166II GTNNAC 5 cut(s) 12, 18, 166, 271, 780
Hpy188I TCNGA 6 cut(s) 86, 350, 770, 808, 846, 856
Hpy188III TCNNGA 7 cut(s) 332, 542, 674, 999, 1134, 1142, 1343
Hpy8I GTNNAC 5 cut(s) 12, 18, 166, 271, 780
HpyAV CCTTC 9 cut(s) 81, 100, 184, 372, 481, 813, 892, 1248, 1294
HpyCH4III ACNGT 5 cut(s) 200, 340, 706, 816, 1267
HpyCH4IV ACGT 2 cut(s) 14, 162
HpyCH4V TGCA 5 cut(s) 745, 912, 1322, 1382, 1388
HpyF10VI GCNNNNNNNGC 5 cut(s) 186, 379, 891, 972, 1106
HpyF3I CTNAG 5 cut(s) 83, 425, 438, 1124, 1240
HpySE526I ACGT 2 cut(s) 14, 162
Hsp92II CATG 8 cut(s) 578, 621, 728, 980, 1099, 1105, 1232, 1264
HspAI GCGC 1 cut(s) 102
Kzo9I GATC 2 cut(s) 1305, 1339
LguI GCTCTTC 1 cut(s) 232
LmnI GCTCC 1 cut(s) 1181
Lsp1109I GCAGC 2 cut(s) 176, 897
LweI GCATC 4 cut(s) 424, 847, 848, 1096
MabI ACCWGGT 1 cut(s) 784
MaeI CTAG 1 cut(s) 972
MaeII ACGT 2 cut(s) 14, 162
MaeIII GTNAC 2 cut(s) 200, 282
MalI GATC 2 cut(s) 1307, 1341
MboI GATC 2 cut(s) 1305, 1339
MhlI GDGCHC 2 cut(s) 574, 873
MlsI TGGCCA 1 cut(s) 1100
MluCI AATT 7 cut(s) 416, 631, 764, 824, 879, 1060, 1367
MluNI TGGCCA 1 cut(s) 1100
MlyI GAGTC 1 cut(s) 664
Mox20I TGGCCA 1 cut(s) 1100
MroXI GAANNNNTTC 1 cut(s) 1283
MscI TGGCCA 1 cut(s) 1100
MseI TTAA 3 cut(s) 315, 582, 1334
MslI CAYNNNNRTG 3 cut(s) 198, 981, 1100
Msp20I TGGCCA 1 cut(s) 1100
MspA1I CMGCKG 1 cut(s) 821
MspCI CTTAAG 1 cut(s) 581
MspI CCGG 1 cut(s) 181
MspR9I CCNGG 2 cut(s) 462, 786
MvaI CCWGG 2 cut(s) 462, 786
MwoI GCNNNNNNNGC 5 cut(s) 186, 379, 891, 972, 1106
NcoI CCATGG 1 cut(s) 1101
NdeII GATC 2 cut(s) 1305, 1339
NheI GCTAGC 1 cut(s) 971
NlaIII CATG 8 cut(s) 578, 621, 728, 980, 1099, 1105, 1232, 1264
NlaIV GGNNCC 2 cut(s) 459, 760
NmeAIII GCCGAG 3 cut(s) 201, 317, 942
NmuCI GTSAC 1 cut(s) 200
NspI RCATGY 1 cut(s) 1232
OliI CACNNNNGTG 1 cut(s) 198
PasI CCCWGGG 1 cut(s) 461
PciSI GCTCTTC 1 cut(s) 232
PdmI GAANNNNTTC 1 cut(s) 1283
PfeI GAWTC 1 cut(s) 54
PkrI GCNGC 3 cut(s) 191, 356, 887
PleI GAGTC 1 cut(s) 664
PpsI GAGTC 1 cut(s) 664
PsiI TTATAA 1 cut(s) 1206
Psp1406I AACGTT 1 cut(s) 14
Psp6I CCWGG 2 cut(s) 460, 784
PspGI CCWGG 2 cut(s) 460, 784
PspN4I GGNNCC 2 cut(s) 459, 760
PspPI GGNCC 3 cut(s) 457, 643, 1257
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 2 cut(s) 779, 1022
RsaNI GTAC 2 cut(s) 778, 1021
RseI CAYNNNNRTG 3 cut(s) 198, 981, 1100
SapI GCTCTTC 1 cut(s) 232
SaqAI TTAA 3 cut(s) 315, 582, 1334
SatI GCNGC 3 cut(s) 190, 355, 886
Sau3AI GATC 2 cut(s) 1305, 1339
Sau96I GGNCC 3 cut(s) 457, 643, 1257
SchI GAGTC 1 cut(s) 664
ScrFI CCNGG 2 cut(s) 462, 786
SduI GDGCHC 2 cut(s) 574, 873
SexAI ACCWGGT 1 cut(s) 784
SfaNI GCATC 4 cut(s) 424, 847, 848, 1096
SfcI CTRYAG 2 cut(s) 829, 1266
SinI GGWCC 2 cut(s) 457, 643
SmiMI CAYNNNNRTG 3 cut(s) 198, 981, 1100
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
Sse9I AATT 7 cut(s) 416, 631, 764, 824, 879, 1060, 1367
SsiI CCGC 6 cut(s) 42, 146, 156, 354, 564, 860
SspMI CTAG 1 cut(s) 972
StyD4I CCNGG 2 cut(s) 460, 784
StyI CCWWGG 1 cut(s) 1101
TaaI ACNGT 5 cut(s) 200, 340, 706, 816, 1267
TaiI ACGT 2 cut(s) 17, 165
TaqI TCGA 5 cut(s) 115, 708, 998, 1308, 1361
TasI AATT 7 cut(s) 416, 631, 764, 824, 879, 1060, 1367
TatI WGTACW 2 cut(s) 777, 1020
TauI GCSGC 1 cut(s) 357
TfiI GAWTC 1 cut(s) 54
Tru1I TTAA 3 cut(s) 315, 582, 1334
Tru9I TTAA 3 cut(s) 315, 582, 1334
TscAI CASTG 1 cut(s) 914
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 2 cut(s) 189, 885
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 5 cut(s) 500, 609, 891, 1028, 1380
TspGWI ACGGA 1 cut(s) 1319
TspRI CASTG 1 cut(s) 914
Vha464I CTTAAG 1 cut(s) 581
VpaK11BI GGWCC 2 cut(s) 457, 643
XapI RAATTY 3 cut(s) 416, 764, 824
XceI RCATGY 1 cut(s) 1232
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
XmnI GAANNNNTTC 1 cut(s) 1283
XspI CTAG 1 cut(s) 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.