Rh7AG116800

Oxygen-independent coproporphyrinogen-III oxidase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0009349
Physical Location & Seq
Forward (+)
9124504 .. 9125989
1486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG116800.1

Sequence Viewer

Length: 1404 bp
ATGCTTAAGTCAACGTTCACACCCTTTTTCTCAGCCATTCCCGCCAAACCAAGATTCCCAAAACCATTACGTTCCACCATTCTCAGAGCCTTAACACAAAGCGCACCACCTGTTCGACAAAATGCCTCACTCACCATTTTCCCACCGCCTACTTCCGCCTACGTCCACCTCCCCTTCTGCCGGAAACGCTGCCACTACTGTGATTTCACCATCATCGCTCTCGGCTCTTCTTCTTCTTCAAACCAACCCGAAGACGACCCACGAATGGTGAACTATGTCCAGTTACTCTGCCGAGAAATCAATGCCACACAAGTTAAGACCAACCCACCTCTGGAAACGGTCTTTTTCGGAGGCGGCACGCCTTCTCTTGTGCCACCAAAGCTTGTTTCTTCCATTTTGGAGACGCTGAGGTTGAAATTCGGGCTGAGCTTGGATGCTGAGATATCTATGGAAATGGACCCTGGGACTTTTGATGGTGAGAAGATGAAGGGAATGGTGGAGTTGGGTGTGAATAGGGTGTCATTGGGAGTTCAGGCATTTCAAGAAGAGTTGTTGAAGTCTTGTGGGAGAGCACATGGTCTTAAGGAGGTTTATGATGCTATTGAAATTGTTGGGTCATGTGGGGTTGAGAATTGGAGTATGGATCTTATCTCTTCTCTGCCTCACCAGACTCCAGAAATGTGGGAAGAGAGTTTGAGGCTAACAGTCGAAGCTTGCCCTCCCCATGTGTCTGTTTATGATTTGCAAGTGGAACAAGGCACCAAATTCGGAAGATTGTACACACCAGGTGAGTTCCCATTGCCTTCTGAAACACGGTCAGCTGAATTCTATAGAATGGCATCTCGGACGCTTTCTGATGCGGGTTATGAGCACTATGAAATTAGCAGCTATGGCAAGAAGGGATATCAGTGCAAGCACAATCTTACTTACTGGAAGAACAAGCCTTTCTATGGTTTTGGCCTTGGCTCTGCTAGCCATGTTGGTGGTGTGAGGTTTTCGAGACCAAAAATGATGAAAGAGTACAGTGGTTATGTGGAGAACTTGGAAAATGGGTTGGTGGATTGTGGTGGGAGTAAATATATTGATGTCAAGGACATGGCCATGGACGTTGTTATGCTCTCTCTTAGAACTTCAAGAGGTCTGGATTTGAAGTCTTTTGGAGAAGCGTATGGTAGCTCCCTTGCTGTCTCTCTTTGCGAGGTTTATAAACCTTATGTTGAAAGTGGGCATGTGGTTTTCTTTGATGAGCAGAGAAGGGCCATGACTGTAGATGAGTTGAACTCCTTCAAACTAAACAAAGAAGAGATCGAAAAAAGTCTTGCATATATCCGTCTAAGTGATCCGGATGGTTTCCTTTTATCGAATGAATTGATATCACTTGCATTTGCAGTTGTATCTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HemN_C Radical_SAM

Protein Analysis

467

Amino Acids

52.04

Weight (kDa)

6.06

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Radical_SAM PF04055 54 - 234 4e-24 Radical SAM superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1206
AccB1I GGYRCC 1 cut(s) 758
AccIII TCCGGA 1 cut(s) 1342
AciI CCGC 5 cut(s) 42, 146, 156, 354, 860
AclI AACGTT 1 cut(s) 14
AclWI GGATC 2 cut(s) 651, 1334
AcoI YGGCCR 1 cut(s) 1098
AcsI RAATTY 3 cut(s) 416, 764, 824
AdeI CACNNNGTG 1 cut(s) 788
AfaI GTAC 2 cut(s) 779, 1022
AfiI CCNNNNNNNGG 4 cut(s) 180, 265, 331, 950
AflII CTTAAG 2 cut(s) 5, 581
AjnI CCWGG 2 cut(s) 460, 784
AjuI GAANNNNNNNTTGG 4 cut(s) 38, 70, 370, 402
AleI CACNNNNGTG 1 cut(s) 198
AluBI AGCT 6 cut(s) 382, 429, 713, 821, 888, 1176
AluI AGCT 6 cut(s) 382, 429, 713, 821, 888, 1176
Alw21I GWGCWC 2 cut(s) 574, 873
Alw26I GTCTC 3 cut(s) 395, 994, 1192
AlwI GGATC 2 cut(s) 651, 1334
Aor13HI TCCGGA 1 cut(s) 1342
AoxI GGCC 3 cut(s) 958, 1098, 1257
ApeKI GCWGC 2 cut(s) 189, 885
ApoI RAATTY 3 cut(s) 416, 764, 824
Asp700I GAANNNNTTC 1 cut(s) 1283
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 2 cut(s) 457, 1257
AsuHPI GGTGA 6 cut(s) 124, 199, 280, 488, 656, 800
AsuNHI GCTAGC 1 cut(s) 971
AvaII GGWCC 1 cut(s) 457
BalI TGGCCA 1 cut(s) 1100
BanI GGYRCC 1 cut(s) 758
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 2 cut(s) 574, 873
BbvCI CCTCAGC 1 cut(s) 407
BbvI GCAGC 2 cut(s) 176, 897
BccI CCATC 3 cut(s) 218, 467, 1340
BcgI CGANNNNNNTGC 2 cut(s) 748, 782
BciT130I CCWGG 2 cut(s) 462, 786
BcoDI GTCTC 3 cut(s) 395, 994, 1192
BfaI CTAG 1 cut(s) 972
BfmI CTRYAG 2 cut(s) 829, 1266
BfrI CTTAAG 2 cut(s) 5, 581
BisI GCNGC 3 cut(s) 190, 355, 886
BlpI GCTNAGC 1 cut(s) 425
BlsI GCNGC 3 cut(s) 191, 356, 887
Bme1390I CCNGG 2 cut(s) 462, 786
Bme18I GGWCC 1 cut(s) 457
BmgT120I GGNCC 2 cut(s) 457, 1257
BmiI GGNNCC 2 cut(s) 459, 760
BmrFI CCNGG 2 cut(s) 462, 786
BmsI GCATC 4 cut(s) 424, 586, 847, 848
BmtI GCTAGC 1 cut(s) 975
BpiI GAAGAC 1 cut(s) 258
BplI GAGNNNNNCTC 2 cut(s) 1265, 1297
BpmI CTGGAG 1 cut(s) 657
Bpu10I CCTNAGC 1 cut(s) 407
Bpu1102I GCTNAGC 1 cut(s) 425
BsaI GGTCTC 1 cut(s) 994
BsaJI CCNNGG 4 cut(s) 460, 461, 961, 1101
BsaWI WCCGGW 1 cut(s) 1342
Bsc4I CCNNNNNNNGG 4 cut(s) 180, 265, 331, 950
Bse1I ACTGG 2 cut(s) 280, 935
Bse3DI GCAATG 1 cut(s) 797
BseAI TCCGGA 1 cut(s) 1342
BseBI CCWGG 2 cut(s) 462, 786
BseDI CCNNGG 4 cut(s) 460, 461, 961, 1101
BseGI GGATG 2 cut(s) 439, 1351
BseLI CCNNNNNNNGG 4 cut(s) 180, 265, 331, 950
BseMI GCAATG 1 cut(s) 797
BseMII CTCAG 5 cut(s) 45, 97, 398, 416, 429
BseNI ACTGG 2 cut(s) 280, 935
BseXI GCAGC 2 cut(s) 176, 897
BshFI GGCC 3 cut(s) 960, 1100, 1259
BshNI GGYRCC 1 cut(s) 758
BsiHKAI GWGCWC 2 cut(s) 574, 873
BsiSI CCGG 2 cut(s) 181, 1343
BslFI GGGAC 1 cut(s) 478
BslI CCNNNNNNNGG 4 cut(s) 180, 265, 331, 950
BsmAI GTCTC 3 cut(s) 395, 994, 1192
BsmBI CGTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 478
BsnI GGCC 3 cut(s) 960, 1100, 1259
Bso31I GGTCTC 1 cut(s) 994
Bsp1286I GDGCHC 2 cut(s) 574, 873
Bsp13I TCCGGA 1 cut(s) 1342
Bsp1407I TGTACA 1 cut(s) 777
Bsp143I GATC 3 cut(s) 643, 1305, 1339
Bsp1720I GCTNAGC 1 cut(s) 425
Bsp19I CCATGG 1 cut(s) 1101
BspACI CCGC 5 cut(s) 42, 146, 156, 354, 860
BspANI GGCC 3 cut(s) 960, 1100, 1259
BspCNI CTCAG 5 cut(s) 44, 96, 399, 417, 430
BspEI TCCGGA 1 cut(s) 1342
BspLI GGNNCC 2 cut(s) 459, 760
BspOI GCTAGC 1 cut(s) 975
BspPI GGATC 2 cut(s) 651, 1334
BspQI GCTCTTC 1 cut(s) 232
BspT107I GGYRCC 1 cut(s) 758
BspTI CTTAAG 2 cut(s) 5, 581
BspTNI GGTCTC 1 cut(s) 994
BsrDI GCAATG 1 cut(s) 797
BsrGI TGTACA 1 cut(s) 777
BsrI ACTGG 2 cut(s) 280, 935
BssECI CCNNGG 4 cut(s) 460, 461, 961, 1101
BssMI GATC 3 cut(s) 643, 1305, 1339
BssT1I CCWWGG 2 cut(s) 961, 1101
Bst2UI CCWGG 2 cut(s) 462, 786
Bst4CI ACNGT 6 cut(s) 200, 340, 706, 816, 1025, 1267
Bst6I CTCTTC 5 cut(s) 232, 540, 658, 681, 1296
BstAFI CTTAAG 2 cut(s) 5, 581
BstAUI TGTACA 1 cut(s) 777
BstC8I GCNNGC 4 cut(s) 359, 715, 914, 973
BstDEI CTNAG 7 cut(s) 31, 83, 407, 425, 438, 1124, 1334
BstDSI CCRYGG 1 cut(s) 1101
BstF5I GGATG 2 cut(s) 439, 1351
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 3 cut(s) 646, 1308, 1342
BstMAI GTCTC 3 cut(s) 395, 994, 1192
BstMBI GATC 3 cut(s) 643, 1305, 1339
BstMWI GCNNNNNNNGC 5 cut(s) 41, 186, 379, 891, 972
BstNI CCWGG 2 cut(s) 462, 786
BstNSI RCATGY 1 cut(s) 1232
BstSCI CCNGG 2 cut(s) 460, 784
BstSFI CTRYAG 2 cut(s) 829, 1266
BstV1I GCAGC 2 cut(s) 176, 897
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 643
BstXI CCANNNNNNTGG 2 cut(s) 681, 983
BstYI RGATCY 1 cut(s) 643
BsuRI GGCC 3 cut(s) 960, 1100, 1259
BtgI CCRYGG 1 cut(s) 1101
BtgZI GCGATG 1 cut(s) 199
BtsCI GGATG 2 cut(s) 439, 1351
BtsIMutI CAGTG 2 cut(s) 914, 1030
Cac8I GCNNGC 4 cut(s) 359, 715, 914, 973
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 2 cut(s) 457, 1257
CseI GACGC 2 cut(s) 412, 856
CsiI ACCWGGT 1 cut(s) 784
Csp6I GTAC 2 cut(s) 778, 1021
CviAII CATG 8 cut(s) 575, 618, 725, 977, 1096, 1102, 1229, 1261
CviQI GTAC 2 cut(s) 778, 1021
DdeI CTNAG 7 cut(s) 31, 83, 407, 425, 438, 1124, 1334
DpnI GATC 3 cut(s) 645, 1307, 1341
DpnII GATC 3 cut(s) 643, 1305, 1339
DraIII CACNNNGTG 1 cut(s) 788
EaeI YGGCCR 1 cut(s) 1098
Eam1104I CTCTTC 5 cut(s) 232, 540, 658, 681, 1296
EarI CTCTTC 5 cut(s) 232, 540, 658, 681, 1296
EciI GGCGGA 1 cut(s) 145
Eco130I CCWWGG 2 cut(s) 961, 1101
Eco31I GGTCTC 1 cut(s) 994
Eco32I GATATC 3 cut(s) 444, 905, 1374
Eco47I GGWCC 1 cut(s) 457
EcoRI GAATTC 1 cut(s) 824
EcoRII CCWGG 2 cut(s) 460, 784
EcoRV GATATC 3 cut(s) 444, 905, 1374
EcoT14I CCWWGG 2 cut(s) 961, 1101
ErhI CCWWGG 2 cut(s) 961, 1101
Esp3I CGTCTC 1 cut(s) 395
FaeI CATG 8 cut(s) 578, 621, 728, 980, 1099, 1105, 1232, 1264
FaqI GGGAC 1 cut(s) 478
FatI CATG 8 cut(s) 574, 617, 724, 976, 1095, 1101, 1228, 1260
FauI CCCGC 2 cut(s) 49, 853
Fnu4HI GCNGC 3 cut(s) 190, 355, 886
FokI GGATG 2 cut(s) 446, 1358
Fsp4HI GCNGC 3 cut(s) 190, 355, 886
FspBI CTAG 1 cut(s) 972
GlaI GCGC 1 cut(s) 103
GluI GCNGC 3 cut(s) 190, 355, 886
GsuI CTGGAG 1 cut(s) 657
HaeIII GGCC 3 cut(s) 960, 1100, 1259
HapII CCGG 2 cut(s) 181, 1343
HgaI GACGC 2 cut(s) 412, 856
HhaI GCGC 1 cut(s) 104
Hin1II CATG 8 cut(s) 578, 621, 728, 980, 1099, 1105, 1232, 1264
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 2 cut(s) 380, 711
HinfI GANTC 2 cut(s) 54, 670
HpaII CCGG 2 cut(s) 181, 1343
HphI GGTGA 6 cut(s) 124, 199, 280, 488, 656, 800
Hpy166II GTNNAC 5 cut(s) 12, 18, 166, 271, 780
Hpy188I TCNGA 6 cut(s) 86, 350, 770, 808, 846, 856
Hpy188III TCNNGA 7 cut(s) 332, 542, 674, 999, 1134, 1142, 1343
Hpy8I GTNNAC 5 cut(s) 12, 18, 166, 271, 780
HpyAV CCTTC 7 cut(s) 184, 372, 481, 813, 892, 1248, 1294
HpyCH4III ACNGT 6 cut(s) 200, 340, 706, 816, 1025, 1267
HpyCH4IV ACGT 4 cut(s) 14, 70, 162, 1107
HpyCH4V TGCA 5 cut(s) 745, 912, 1322, 1382, 1388
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 186, 379, 891, 972
HpyF3I CTNAG 7 cut(s) 31, 83, 407, 425, 438, 1124, 1334
HpySE526I ACGT 4 cut(s) 14, 70, 162, 1107
Hsp92II CATG 8 cut(s) 578, 621, 728, 980, 1099, 1105, 1232, 1264
HspAI GCGC 1 cut(s) 102
Kpn2I TCCGGA 1 cut(s) 1342
Kzo9I GATC 3 cut(s) 643, 1305, 1339
LguI GCTCTTC 1 cut(s) 232
LmnI GCTCC 1 cut(s) 1181
Lsp1109I GCAGC 2 cut(s) 176, 897
LweI GCATC 4 cut(s) 424, 586, 847, 848
MabI ACCWGGT 1 cut(s) 784
MaeI CTAG 1 cut(s) 972
MaeII ACGT 4 cut(s) 14, 70, 162, 1107
MaeIII GTNAC 1 cut(s) 282
MalI GATC 3 cut(s) 645, 1307, 1341
MboI GATC 3 cut(s) 643, 1305, 1339
MflI RGATCY 1 cut(s) 643
MhlI GDGCHC 2 cut(s) 574, 873
MlsI TGGCCA 1 cut(s) 1100
MluCI AATT 7 cut(s) 416, 606, 631, 764, 824, 879, 1367
MluNI TGGCCA 1 cut(s) 1100
MlyI GAGTC 1 cut(s) 664
Mox20I TGGCCA 1 cut(s) 1100
MroI TCCGGA 1 cut(s) 1342
MroXI GAANNNNTTC 1 cut(s) 1283
MscI TGGCCA 1 cut(s) 1100
MseI TTAA 4 cut(s) 6, 92, 315, 582
MslI CAYNNNNRTG 3 cut(s) 198, 981, 1100
Msp20I TGGCCA 1 cut(s) 1100
MspA1I CMGCKG 1 cut(s) 821
MspCI CTTAAG 2 cut(s) 5, 581
MspI CCGG 2 cut(s) 181, 1343
MspR9I CCNGG 2 cut(s) 462, 786
MvaI CCWGG 2 cut(s) 462, 786
MwoI GCNNNNNNNGC 5 cut(s) 41, 186, 379, 891, 972
NcoI CCATGG 1 cut(s) 1101
NdeII GATC 3 cut(s) 643, 1305, 1339
NheI GCTAGC 1 cut(s) 971
NlaIII CATG 8 cut(s) 578, 621, 728, 980, 1099, 1105, 1232, 1264
NlaIV GGNNCC 2 cut(s) 459, 760
NmeAIII GCCGAG 2 cut(s) 201, 317
NspI RCATGY 1 cut(s) 1232
OliI CACNNNNGTG 1 cut(s) 198
PasI CCCWGGG 1 cut(s) 461
PciSI GCTCTTC 1 cut(s) 232
PdmI GAANNNNTTC 1 cut(s) 1283
PfeI GAWTC 1 cut(s) 54
PkrI GCNGC 3 cut(s) 191, 356, 887
PleI GAGTC 1 cut(s) 664
PpsI GAGTC 1 cut(s) 664
PsiI TTATAA 1 cut(s) 1206
Psp1406I AACGTT 1 cut(s) 14
Psp6I CCWGG 2 cut(s) 460, 784
PspGI CCWGG 2 cut(s) 460, 784
PspN4I GGNNCC 2 cut(s) 459, 760
PspPI GGNCC 2 cut(s) 457, 1257
PsuI RGATCY 1 cut(s) 643
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 2 cut(s) 779, 1022
RsaNI GTAC 2 cut(s) 778, 1021
RseI CAYNNNNRTG 3 cut(s) 198, 981, 1100
SapI GCTCTTC 1 cut(s) 232
SaqAI TTAA 4 cut(s) 6, 92, 315, 582
SatI GCNGC 3 cut(s) 190, 355, 886
Sau3AI GATC 3 cut(s) 643, 1305, 1339
Sau96I GGNCC 2 cut(s) 457, 1257
SchI GAGTC 1 cut(s) 664
ScrFI CCNGG 2 cut(s) 462, 786
SduI GDGCHC 2 cut(s) 574, 873
SexAI ACCWGGT 1 cut(s) 784
SfaNI GCATC 4 cut(s) 424, 586, 847, 848
SfcI CTRYAG 2 cut(s) 829, 1266
SinI GGWCC 1 cut(s) 457
SmiMI CAYNNNNRTG 3 cut(s) 198, 981, 1100
SmlI CTYRAG 2 cut(s) 5, 581
SmoI CTYRAG 2 cut(s) 5, 581
Sse9I AATT 7 cut(s) 416, 606, 631, 764, 824, 879, 1367
SsiI CCGC 5 cut(s) 42, 146, 156, 354, 860
SspMI CTAG 1 cut(s) 972
StyD4I CCNGG 2 cut(s) 460, 784
StyI CCWWGG 2 cut(s) 961, 1101
TaaI ACNGT 6 cut(s) 200, 340, 706, 816, 1025, 1267
TaiI ACGT 4 cut(s) 17, 73, 165, 1110
TaqI TCGA 5 cut(s) 115, 708, 998, 1308, 1361
TasI AATT 7 cut(s) 416, 606, 631, 764, 824, 879, 1367
TatI WGTACW 2 cut(s) 777, 1020
TauI GCSGC 1 cut(s) 357
TfiI GAWTC 1 cut(s) 54
Tru1I TTAA 4 cut(s) 6, 92, 315, 582
Tru9I TTAA 4 cut(s) 6, 92, 315, 582
TscAI CASTG 2 cut(s) 914, 1030
TseI GCWGC 2 cut(s) 189, 885
TspDTI ATGAA 4 cut(s) 500, 891, 1028, 1380
TspGWI ACGGA 2 cut(s) 1319, 1389
TspRI CASTG 2 cut(s) 914, 1030
Vha464I CTTAAG 2 cut(s) 5, 581
VpaK11BI GGWCC 1 cut(s) 457
XapI RAATTY 3 cut(s) 416, 764, 824
XceI RCATGY 1 cut(s) 1232
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
XmnI GAANNNNTTC 1 cut(s) 1283
XspI CTAG 1 cut(s) 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.