Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027561.1

Orthogroup ID

OG0009349

Physical Location & Seq

Genomic Coordinates Reverse (-)

991 .. 1560

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027561.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atggcatctcagacgctttctgatgcgggttatgagcactatgaaattagcagctatggcaagaagggatatcagtgcaagcacaatcttacttactggaagaacaagcctttctatggttttggcctcggctctgctagccatgttggtggtgtgaggttttcgagaccaaaaatgatgaaagagtacaatggttatgtggagaacttggaaaatgggttggtggattgtggtgggagtaaatatattgatgtcaaggacatggccatggacgttgttatgctctctcttagaacttcaagaggtctggatttgaagtcttttggagaagcgtatggtagctcccttgttgtctctctttgcgaggtttataaaccttatgttgaaagtgggcatgtggttttcttagatgagcagagaagggccatgactgtagatgagttgaactccttcaaactaaacgaagaagagatcgaaaaaagtcttgcatatatccgtctaagtgatccagatggtttccttttatcgaatgaattgatatcacttgcatttgcagttgtatcgccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HemN_C Radical_SAM

Protein Analysis

189

Amino Acids

21.17

Weight (kDa)

5.42

Isoelectric Point (pI)

30.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63290
fragaria_vesca	FvH4_5g07331 FvH4_5g07462
malus_domestica	MD06G1152300.v1.1 MD06G1154400.v1.1 MD06G1157100.v1.1 MD06G1157200.v1.1 MD14G1163800.v1.1
prunus_persica	Prupe.5G157200_v2.0.a1
pyrus_communis	pycom06g14000 pycom14g13650
rosa_chinensis	RchiOBHm_Chr7g0191211
rosa_laevigata	RLG00000004468 RLG00000004469
rosa_multiflora	Rmu_co8185394.1_g000001 Rmu_sc0027561.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263970
rosa_rugosa	Rorug06G0509600
rosa_samantha	Rh7AG116800 Rh7BG119100 Rh7CG121700 Rh7DG120100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AciI	CCGC	1 cut(s)	26
AclWI	GGATC	1 cut(s)	500
AcoI	YGGCCR	1 cut(s)	264
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	5 cut(s)	300, 316, 386, 445, 454
AluBI	AGCT	2 cut(s)	54, 342
AluI	AGCT	2 cut(s)	54, 342
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	2 cut(s)	160, 358
AlwI	GGATC	1 cut(s)	500
AoxI	GGCC	3 cut(s)	124, 264, 423
ApeKI	GCWGC	1 cut(s)	51
Asp700I	GAANNNNTTC	1 cut(s)	449
AspS9I	GGNCC	1 cut(s)	423
AsuNHI	GCTAGC	1 cut(s)	137
BalI	TGGCCA	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	63
BccI	CCATC	1 cut(s)	506
BceAI	ACGGC	1 cut(s)	550
BcgI	CGANNNNNNTGC	1 cut(s)	543
BcoDI	GTCTC	2 cut(s)	160, 358
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	432
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	423
BmsI	GCATC	2 cut(s)	13, 14
BmtI	GCTAGC	1 cut(s)	141
BplI	GAGNNNNNCTC	2 cut(s)	431, 463
BsaI	GGTCTC	1 cut(s)	160
BsaJI	CCNNGG	2 cut(s)	127, 267
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	101
BseDI	CCNNGG	2 cut(s)	127, 267
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	63
BshFI	GGCC	3 cut(s)	126, 266, 425
BsiHKAI	GWGCWC	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	2 cut(s)	160, 358
BsnI	GGCC	3 cut(s)	126, 266, 425
Bso31I	GGTCTC	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	471, 505
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	3 cut(s)	126, 266, 425
BspCNI	CTCAG	1 cut(s)	22
BspOI	GCTAGC	1 cut(s)	141
BspPI	GGATC	1 cut(s)	500
BspTNI	GGTCTC	1 cut(s)	160
BsrI	ACTGG	1 cut(s)	101
BssECI	CCNNGG	2 cut(s)	127, 267
BssMI	GATC	2 cut(s)	471, 505
BssT1I	CCWWGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	433
Bst6I	CTCTTC	1 cut(s)	462
BstC8I	GCNNGC	2 cut(s)	80, 139
BstDEI	CTNAG	4 cut(s)	9, 290, 406, 500
BstDSI	CCRYGG	1 cut(s)	267
BstKTI	GATC	2 cut(s)	474, 508
BstMAI	GTCTC	2 cut(s)	160, 358
BstMBI	GATC	2 cut(s)	471, 505
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 138
BstNSI	RCATGY	1 cut(s)	398
BstSFI	CTRYAG	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	63
BstXI	CCANNNNNNTGG	1 cut(s)	149
BsuRI	GGCC	3 cut(s)	126, 266, 425
BtgI	CCRYGG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	80
Cac8I	GCNNGC	2 cut(s)	80, 139
Cfr13I	GGNCC	1 cut(s)	423
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	5 cut(s)	143, 262, 268, 395, 427
CviJI	RGCY	8 cut(s)	54, 109, 126, 132, 141, 266, 342, 425
CviKI_1	RGCY	8 cut(s)	54, 109, 126, 132, 141, 266, 342, 425
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	4 cut(s)	9, 290, 406, 500
DpnI	GATC	2 cut(s)	473, 507
DpnII	GATC	2 cut(s)	471, 505
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco130I	CCWWGG	1 cut(s)	267
Eco31I	GGTCTC	1 cut(s)	160
Eco32I	GATATC	2 cut(s)	71, 540
EcoRV	GATATC	2 cut(s)	71, 540
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	5 cut(s)	146, 265, 271, 398, 430
FatI	CATG	5 cut(s)	142, 261, 267, 394, 426
FauI	CCCGC	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	52
Fsp4HI	GCNGC	1 cut(s)	52
FspBI	CTAG	1 cut(s)	138
GluI	GCNGC	1 cut(s)	52
HaeIII	GGCC	3 cut(s)	126, 266, 425
HgaI	GACGC	1 cut(s)	22
Hin1II	CATG	5 cut(s)	146, 265, 271, 398, 430
Hpy188I	TCNGA	2 cut(s)	12, 22
Hpy188III	TCNNGA	4 cut(s)	165, 300, 308, 509
HpyAV	CCTTC	3 cut(s)	58, 414, 460
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	4 cut(s)	78, 488, 548, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 138
HpyF3I	CTNAG	4 cut(s)	9, 290, 406, 500
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	5 cut(s)	146, 265, 271, 398, 430
Kzo9I	GATC	2 cut(s)	471, 505
LmnI	GCTCC	1 cut(s)	347
LpnPI	CCDG	3 cut(s)	82, 293, 522
Lsp1109I	GCAGC	1 cut(s)	63
LweI	GCATC	2 cut(s)	13, 14
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	1 cut(s)	273
MalI	GATC	2 cut(s)	473, 507
MboI	GATC	2 cut(s)	471, 505
MboII	GAAGA	3 cut(s)	112, 476, 479
MhlI	GDGCHC	1 cut(s)	39
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	2 cut(s)	45, 533
MluNI	TGGCCA	1 cut(s)	266
MnlI	CCTC	4 cut(s)	137, 150, 296, 358
Mox20I	TGGCCA	1 cut(s)	266
MroXI	GAANNNNTTC	1 cut(s)	449
MscI	TGGCCA	1 cut(s)	266
MslI	CAYNNNNRTG	2 cut(s)	147, 266
Msp20I	TGGCCA	1 cut(s)	266
MwoI	GCNNNNNNNGC	2 cut(s)	57, 138
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	2 cut(s)	471, 505
NheI	GCTAGC	1 cut(s)	137
NlaIII	CATG	5 cut(s)	146, 265, 271, 398, 430
NmeAIII	GCCGAG	1 cut(s)	108
NspI	RCATGY	1 cut(s)	398
PdmI	GAANNNNTTC	1 cut(s)	449
PkrI	GCNGC	1 cut(s)	53
PsiI	TTATAA	1 cut(s)	372
PspPI	GGNCC	1 cut(s)	423
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	2 cut(s)	147, 266
SatI	GCNGC	1 cut(s)	52
Sau3AI	GATC	2 cut(s)	471, 505
Sau96I	GGNCC	1 cut(s)	423
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	7 cut(s)	56, 161, 276, 307, 344, 369, 379
SfaNI	GCATC	2 cut(s)	13, 14
SfcI	CTRYAG	1 cut(s)	432
SmiMI	CAYNNNNRTG	2 cut(s)	147, 266
Sse9I	AATT	2 cut(s)	45, 533
SsiI	CCGC	1 cut(s)	26
SspMI	CTAG	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	433
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	3 cut(s)	164, 474, 527
TasI	AATT	2 cut(s)	45, 533
TatI	WGTACW	1 cut(s)	186
TscAI	CASTG	1 cut(s)	80
TseI	GCWGC	1 cut(s)	51
TspDTI	ATGAA	3 cut(s)	57, 194, 546
TspGWI	ACGGA	1 cut(s)	485
TspRI	CASTG	1 cut(s)	80
XceI	RCATGY	1 cut(s)	398
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.