Rorug06G0509600

Oxygen-independent coproporphyrinogen-III oxidase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009349
Physical Location & Seq
Reverse (-)
62395593 .. 62395972
380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0509600.1

Sequence Viewer

Length: 288 bp
ATGGGGAGCAAGCTTCTTATTATGCTTCTCATGGTTTTTCTGTTTGTGGCGTCGGCCCAACCAGAACGACCGTACACAATGCGGATAAACTGTGGAGCTCGGGAGAATGTTATAACACCACCAGAGGAGACGGTGTGGTACCACGACTTTGGCTTCACTGGAGGCATAAGTAAAAATACTTCTATCTTGGGTCTTAACGGCCCTCCATTTGATACTGTTCGAGTATTTCCCTTAAGTCCCGAGGAATGCTACCTCTTGTCCCATGTTCCCCAGGACGTTTTCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HemN_C Radical_SAM

Protein Analysis

95

Amino Acids

10.66

Weight (kDa)

5.14

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 113, 286
Acc65I GGTACC 1 cut(s) 138
AccB1I GGYRCC 1 cut(s) 138
AciI CCGC 1 cut(s) 82
AcyI GRCGYC 1 cut(s) 50
AfaI GTAC 2 cut(s) 74, 140
AflII CTTAAG 1 cut(s) 232
AjnI CCWGG 1 cut(s) 270
AluBI AGCT 2 cut(s) 13, 98
AluI AGCT 2 cut(s) 13, 98
Alw21I GWGCWC 1 cut(s) 100
Alw26I GTCTC 1 cut(s) 122
Ama87I CYCGRG 2 cut(s) 99, 239
AoxI GGCC 2 cut(s) 54, 199
Asp718I GGTACC 1 cut(s) 138
AspS9I GGNCC 2 cut(s) 55, 200
AvaI CYCGRG 2 cut(s) 99, 239
BanI GGYRCC 1 cut(s) 138
BanII GRGCYC 1 cut(s) 100
BarI GAAGNNNNNNTAC 2 cut(s) 163, 195
Bbv12I GWGCWC 1 cut(s) 100
BceAI ACGGC 1 cut(s) 214
BciT130I CCWGG 1 cut(s) 272
BcoDI GTCTC 1 cut(s) 122
BfrI CTTAAG 1 cut(s) 232
Bme1390I CCNGG 1 cut(s) 272
BmeT110I CYCGRG 2 cut(s) 99, 239
BmgT120I GGNCC 2 cut(s) 55, 200
BmiI GGNNCC 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 272
BpmI CTGGAG 1 cut(s) 180
BsaHI GRCGYC 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 240, 270
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bse1I ACTGG 1 cut(s) 163
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 2 cut(s) 240, 270
BseNI ACTGG 1 cut(s) 163
BseRI GAGGAG 1 cut(s) 140
Bsh1285I CGRYCG 1 cut(s) 71
BshFI GGCC 2 cut(s) 56, 201
BshNI GGYRCC 1 cut(s) 138
BsiEI CGRYCG 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 100
BsiHKCI CYCGRG 2 cut(s) 99, 239
BslFI GGGAC 2 cut(s) 222, 244
BsmAI GTCTC 1 cut(s) 122
BsmBI CGTCTC 1 cut(s) 122
BsmFI GGGAC 2 cut(s) 222, 244
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 2 cut(s) 56, 201
BsoBI CYCGRG 2 cut(s) 99, 239
Bsp1286I GDGCHC 1 cut(s) 100
BspACI CCGC 1 cut(s) 82
BspANI GGCC 2 cut(s) 56, 201
BspLI GGNNCC 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 138
BspTI CTTAAG 1 cut(s) 232
BsrI ACTGG 1 cut(s) 163
BssECI CCNNGG 2 cut(s) 240, 270
BssNI GRCGYC 1 cut(s) 50
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 4 cut(s) 72, 92, 133, 217
BstACI GRCGYC 1 cut(s) 50
BstAFI CTTAAG 1 cut(s) 232
BstC8I GCNNGC 1 cut(s) 11
BstMAI GTCTC 1 cut(s) 122
BstMCI CGRYCG 1 cut(s) 71
BstNI CCWGG 1 cut(s) 272
BstSCI CCNGG 1 cut(s) 270
BstXI CCANNNNNNTGG 1 cut(s) 149
BsuRI GGCC 2 cut(s) 56, 201
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 11
Cfr13I GGNCC 2 cut(s) 55, 200
CseI GACGC 1 cut(s) 39
Csp6I GTAC 2 cut(s) 73, 139
CviAII CATG 2 cut(s) 31, 263
CviJI RGCY 5 cut(s) 13, 56, 98, 153, 201
CviKI_1 RGCY 5 cut(s) 13, 56, 98, 153, 201
CviQI GTAC 2 cut(s) 73, 139
Ecl136II GAGCTC 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 98
Eco88I CYCGRG 2 cut(s) 99, 239
EcoICRI GAGCTC 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 270
EcoT38I GRGCYC 1 cut(s) 100
Esp3I CGTCTC 1 cut(s) 122
FaeI CATG 2 cut(s) 34, 266
FaiI YATR 6 cut(s) 23, 32, 113, 167, 264, 286
FaqI GGGAC 2 cut(s) 222, 244
FatI CATG 2 cut(s) 30, 262
FriOI GRGCYC 1 cut(s) 100
GsuI CTGGAG 1 cut(s) 180
HaeIII GGCC 2 cut(s) 56, 201
HgaI GACGC 1 cut(s) 39
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 2 cut(s) 34, 266
HindIII AAGCTT 1 cut(s) 11
Hpy166II GTNNAC 1 cut(s) 75
Hpy188III TCNNGA 2 cut(s) 101, 239
Hpy8I GTNNAC 1 cut(s) 75
Hpy99I CGWCG 1 cut(s) 55
HpyCH4III ACNGT 4 cut(s) 72, 92, 133, 217
HpyCH4IV ACGT 1 cut(s) 276
HpySE526I ACGT 1 cut(s) 276
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 2 cut(s) 34, 266
KpnI GGTACC 1 cut(s) 142
LmnI GCTCC 2 cut(s) 6, 95
LpnPI CCDG 5 cut(s) 75, 135, 144, 257, 284
MaeII ACGT 1 cut(s) 276
MhlI GDGCHC 1 cut(s) 100
MnlI CCTC 5 cut(s) 118, 155, 213, 235, 263
MseI TTAA 2 cut(s) 195, 233
MspCI CTTAAG 1 cut(s) 232
MspR9I CCNGG 1 cut(s) 272
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 1 cut(s) 272
NlaIII CATG 2 cut(s) 34, 266
NlaIV GGNNCC 1 cut(s) 140
PctI GAATGC 1 cut(s) 251
PsiI TTATAA 2 cut(s) 113, 286
Psp124BI GAGCTC 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 140
PspPI GGNCC 2 cut(s) 55, 200
RsaI GTAC 2 cut(s) 74, 140
RsaNI GTAC 2 cut(s) 73, 139
SacI GAGCTC 1 cut(s) 100
SaqAI TTAA 2 cut(s) 195, 233
Sau96I GGNCC 2 cut(s) 55, 200
ScrFI CCNGG 1 cut(s) 272
SduI GDGCHC 1 cut(s) 100
SetI ASST 4 cut(s) 15, 100, 255, 279
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
SsiI CCGC 1 cut(s) 82
SstI GAGCTC 1 cut(s) 100
StyD4I CCNGG 1 cut(s) 270
TaaI ACNGT 4 cut(s) 72, 92, 133, 217
TaiI ACGT 1 cut(s) 279
TaqI TCGA 1 cut(s) 220
Tru1I TTAA 2 cut(s) 195, 233
Tru9I TTAA 2 cut(s) 195, 233
TscAI CASTG 1 cut(s) 163
TspRI CASTG 1 cut(s) 163
Vha464I CTTAAG 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.