Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003064

Physical Location & Seq

Genomic Coordinates Reverse (-)

5839643 .. 5841868

Gene Structure 2226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGAGGGATGCAGGTACTACTTGGTAATGATACTGGTTCAGATAGCCTATGGTGGTTCAAGCGTCCTCGTTAAACTTTCTCTTGAGGAAGGTCTCAAGCCAGTTGTCTTTGTGGTTTATAGGCATGTTATGGCCATGTTTTTGCTAGCACCATTTGCTTATGTTCTTGAAAGGAAGCAAAGACCTTCACTCACATTTTCAATAGCAGCAAAAGTTTTTGTGCTCACATTATTTGGGACTACTATCCATCTCAATGTGTACTACACTGGTTTAGCATACACCTCCCCCACAGTTGCCTGCGCCTTGAGTAACATAGTCCCAACTTTGACGTTTCTAATGGCAGTTCTACTTCGGATGGAGAATTTGAATATAAAAAGTGTCAGAGGTCAAGCAAAGGTAGTTGGCACACTTCTTTGCATCTGTGGTTCTCTAATTTTCACTTTCTGGAAAGGGTACCTTTTCAAGGGTCTTGTTGAGAGGCCACTGCTCACTATATATAGCACTGAGTTGAAGCATGGTAGCGAAAACTGGATCAAGGGTTCTGCTCTTATTCTTATCAGTCAGATAGTATGGTGTTCATGGCTGATTCTGCAGGCTGTGGTCACCAGAGTCTACCCTGCTCCATTGTCACTGACCACCCTGATATGCTTTTTCGCATCATTGCAATCTTCCATTGTTGCTATGTTTTTCGCAAGAGATCAAGCTTCATGGAGAATTGATACAAATGTGCAACTTTTAACCATTGTCTACAGTGGAGTTGTGAGCTCGGCCTTAGTCTATTACCTGCAAACATGGTGCATCAGCTACAAGGGACCGGTGTTTACGGCCATGTTTAGTCCCCTGCAAGTCATTATAGTCGCACTGTTCTCGGCATTTGCTTTTGCTGAGAGATTTCACGTCGGCAGCTTGATCGGAGCATTTCTCATTATCGTTGGCCTTTACTCTTTTCTATGGGGAAAGAAGACGGATGGACTTGTTGCTGCAGTCACAGAGAATGAAAAAGGAGTACTTAATGATGATAAGGTGGTCACCATTACCCTGAACGATATTAAAGTGACGAATCCTGTAACTACAGAAACTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

362

Amino Acids

40.01

Weight (kDa)

9.14

Isoelectric Point (pI)

25.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	7 - 146	6.5e-15	EamA-like transporter family
EamA	PF00892	179 - 315	6.6e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003064)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10210 FvH4_5g10220
malus_domestica	MD06G1126900.v1.1 MD06G1127200.v1.1 MD14G1142400.v1.1
prunus_persica	Prupe.4G100300_v2.0.a1 Prupe.5G136500_v2.0.a1 Prupe.5G136500_v2.0.a1
pyrus_communis	pycom06g11660 pycom14g11780 pycom14g11810
rosa_chinensis	RchiOBHm_Chr7g0188001 RchiOBHm_Chr7g0188011
rosa_laevigata	RLG00000004733 RLG00000004734 RLG00000004735
rosa_multiflora	Rmu_co8503989.1_g000001 Rmu_sc0003624.1_g000020 Rmu_ssc0000422.1_g000012
rosa_roxburghii	Rroxscaffold_3G00266810 Rroxscaffold_3G00266820
rosa_rugosa	Rorug06G0486700 Rorug06G0486700 Rorug06G0486800 Rorug06G0486900
rosa_samantha	Rh7AG091600 Rh7AG091700 Rh7BG093100 Rh7BG093200 Rh7BG093300 Rh7CG092400 Rh7CG092500 Rh7CG092700 Rh7DG093800 Rh7DG093900
rosa_wichuraiana	Rw7G007900 Rw7G007910 Rw7G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	3, 792
Acc65I	GGTACC	1 cut(s)	453
AccB1I	GGYRCC	1 cut(s)	453
AccI	GTMKAC	2 cut(s)	612, 747
AclWI	GGATC	1 cut(s)	539
AcoI	YGGCCR	2 cut(s)	132, 825
AcsI	RAATTY	1 cut(s)	361
AfaI	GTAC	4 cut(s)	17, 260, 455, 1008
AfiI	CCNNNNNNNGG	1 cut(s)	463
AgeI	ACCGGT	1 cut(s)	814
AgsI	TTSAA	6 cut(s)	60, 170, 201, 367, 463, 511
AjiI	CACGTC	1 cut(s)	898
AloI	GAACNNNNNNTCC	2 cut(s)	523, 555
AluBI	AGCT	4 cut(s)	704, 765, 804, 906
AluI	AGCT	4 cut(s)	704, 765, 804, 906
Alw21I	GWGCWC	2 cut(s)	225, 767
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	539
AlwNI	CAGNNNCTG	1 cut(s)	1079
AoxI	GGCC	5 cut(s)	132, 479, 768, 825, 934
ApeKI	GCWGC	3 cut(s)	206, 903, 980
ApoI	RAATTY	1 cut(s)	361
AsiGI	ACCGGT	1 cut(s)	814
Asp718I	GGTACC	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	812
AsuHPI	GGTGA	2 cut(s)	595, 1021
AsuNHI	GCTAGC	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	812
BaeI	ACNNNNGTAYC	2 cut(s)	711, 744
BalI	TGGCCA	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	453
BanII	GRGCYC	1 cut(s)	767
BbsI	GAAGAC	1 cut(s)	968
Bbv12I	GWGCWC	2 cut(s)	225, 767
BbvI	GCAGC	3 cut(s)	218, 915, 967
BccI	CCATC	3 cut(s)	255, 349, 962
BceAI	ACGGC	1 cut(s)	840
BcgI	CGANNNNNNTGC	4 cut(s)	849, 883, 892, 926
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	4 cut(s)	590, 748, 981, 1071
BfuAI	ACCTGC	2 cut(s)	3, 792
BisI	GCNGC	3 cut(s)	207, 904, 981
BlsI	GCNGC	3 cut(s)	208, 905, 982
BmcAI	AGTACT	1 cut(s)	1008
Bme18I	GGWCC	1 cut(s)	812
BmgBI	CACGTC	1 cut(s)	898
BmgT120I	GGNCC	1 cut(s)	812
BmiI	GGNNCC	2 cut(s)	455, 813
BmsI	GCATC	3 cut(s)	426, 665, 807
BmtI	GCTAGC	1 cut(s)	149
BpiI	GAAGAC	1 cut(s)	968
BplI	GAGNNNNNCTC	2 cut(s)	906, 938
BpuEI	CTTGAG	3 cut(s)	80, 104, 325
BsaI	GGTCTC	1 cut(s)	98
BsaWI	WCCGGW	1 cut(s)	814
Bsc4I	CCNNNNNNNGG	1 cut(s)	463
Bse118I	RCCGGY	1 cut(s)	814
Bse1I	ACTGG	4 cut(s)	39, 101, 271, 533
Bse3DI	GCAATG	1 cut(s)	659
BseGI	GGATG	3 cut(s)	14, 360, 973
BseLI	CCNNNNNNNGG	1 cut(s)	463
BseMI	GCAATG	1 cut(s)	659
BseMII	CTCAG	2 cut(s)	495, 876
BseNI	ACTGG	4 cut(s)	39, 101, 271, 533
BseXI	GCAGC	3 cut(s)	218, 915, 967
BshFI	GGCC	5 cut(s)	134, 481, 770, 827, 936
BshNI	GGYRCC	1 cut(s)	453
BshTI	ACCGGT	1 cut(s)	814
BsiHKAI	GWGCWC	2 cut(s)	225, 767
BsiSI	CCGG	1 cut(s)	815
BslFI	GGGAC	4 cut(s)	250, 302, 822, 825
BslI	CCNNNNNNNGG	1 cut(s)	463
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	4 cut(s)	250, 302, 822, 825
BsnI	GGCC	5 cut(s)	134, 481, 770, 827, 936
Bso31I	GGTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	225, 767
Bsp143I	GATC	3 cut(s)	531, 697, 909
BspANI	GGCC	5 cut(s)	134, 481, 770, 827, 936
BspCNI	CTCAG	2 cut(s)	496, 877
BspLI	GGNNCC	2 cut(s)	455, 813
BspMAI	CTGCAG	2 cut(s)	594, 985
BspMI	ACCTGC	2 cut(s)	3, 792
BspOI	GCTAGC	1 cut(s)	149
BspPI	GGATC	1 cut(s)	539
BspT107I	GGYRCC	1 cut(s)	453
BspTNI	GGTCTC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	659
BsrFI	RCCGGY	1 cut(s)	814
BsrI	ACTGG	4 cut(s)	39, 101, 271, 533
BssAI	RCCGGY	1 cut(s)	814
BssMI	GATC	3 cut(s)	531, 697, 909
Bst4CI	ACNGT	3 cut(s)	292, 752, 864
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstC8I	GCNNGC	3 cut(s)	147, 298, 594
BstDEI	CTNAG	3 cut(s)	504, 772, 885
BstEII	GGTNACC	2 cut(s)	601, 1027
BstENI	CCTNNNNNAGG	1 cut(s)	461
BstF5I	GGATG	3 cut(s)	14, 360, 973
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	3 cut(s)	534, 700, 912
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	3 cut(s)	531, 697, 909
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 589
BstNSI	RCATGY	1 cut(s)	128
BstPI	GGTNACC	2 cut(s)	601, 1027
BstSFI	CTRYAG	4 cut(s)	590, 748, 981, 1071
BstV1I	GCAGC	3 cut(s)	218, 915, 967
BstV2I	GAAGAC	1 cut(s)	968
BsuRI	GGCC	5 cut(s)	134, 481, 770, 827, 936
BtrI	CACGTC	1 cut(s)	898
BtsCI	GGATG	3 cut(s)	14, 360, 973
BtsI	GCAGTG	1 cut(s)	482
BtsIMutI	CAGTG	6 cut(s)	264, 482, 501, 629, 757, 860
BveI	ACCTGC	2 cut(s)	3, 792
Cac8I	GCNNGC	3 cut(s)	147, 298, 594
CaiI	CAGNNNCTG	1 cut(s)	1079
CfoI	GCGC	1 cut(s)	302
Cfr10I	RCCGGY	1 cut(s)	814
Cfr13I	GGNCC	1 cut(s)	812
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	4 cut(s)	16, 259, 454, 1007
CspAI	ACCGGT	1 cut(s)	814
CviAII	CATG	7 cut(s)	125, 136, 515, 579, 708, 792, 829
CviQI	GTAC	4 cut(s)	16, 259, 454, 1007
DdeI	CTNAG	3 cut(s)	504, 772, 885
DpnI	GATC	3 cut(s)	533, 699, 911
DpnII	GATC	3 cut(s)	531, 697, 909
EaeI	YGGCCR	2 cut(s)	132, 825
Ecl136II	GAGCTC	1 cut(s)	765
Eco24I	GRGCYC	1 cut(s)	767
Eco31I	GGTCTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	812
Eco53kI	GAGCTC	1 cut(s)	765
Eco91I	GGTNACC	2 cut(s)	601, 1027
EcoICRI	GAGCTC	1 cut(s)	765
EcoNI	CCTNNNNNAGG	1 cut(s)	461
EcoO65I	GGTNACC	2 cut(s)	601, 1027
EcoT38I	GRGCYC	1 cut(s)	767
FaeI	CATG	7 cut(s)	128, 139, 518, 582, 711, 795, 832
FalI	AAGNNNNNCTT	4 cut(s)	441, 473, 993, 1025
FaqI	GGGAC	4 cut(s)	250, 302, 822, 825
FatI	CATG	7 cut(s)	124, 135, 514, 578, 707, 791, 828
FblI	GTMKAC	2 cut(s)	612, 747
Fnu4HI	GCNGC	3 cut(s)	207, 904, 981
FokI	GGATG	3 cut(s)	21, 367, 980
FriOI	GRGCYC	1 cut(s)	767
Fsp4HI	GCNGC	3 cut(s)	207, 904, 981
FspBI	CTAG	1 cut(s)	146
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	3 cut(s)	207, 904, 981
HaeIII	GGCC	5 cut(s)	134, 481, 770, 827, 936
HapII	CCGG	1 cut(s)	815
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	7 cut(s)	128, 139, 518, 582, 711, 795, 832
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HindIII	AAGCTT	1 cut(s)	702
HinfI	GANTC	3 cut(s)	586, 609, 1060
HpaII	CCGG	1 cut(s)	815
HphI	GGTGA	2 cut(s)	595, 1021
Hpy166II	GTNNAC	4 cut(s)	259, 613, 748, 822
Hpy188I	TCNGA	5 cut(s)	42, 354, 383, 564, 914
Hpy188III	TCNNGA	3 cut(s)	83, 167, 445
Hpy8I	GTNNAC	4 cut(s)	259, 613, 748, 822
Hpy99I	CGWCG	1 cut(s)	902
HpyAV	CCTTC	2 cut(s)	83, 195
HpyCH4III	ACNGT	3 cut(s)	292, 752, 864
HpyCH4IV	ACGT	2 cut(s)	329, 897
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 589
HpyF3I	CTNAG	3 cut(s)	504, 772, 885
HpySE526I	ACGT	2 cut(s)	329, 897
Hsp92II	CATG	7 cut(s)	128, 139, 518, 582, 711, 795, 832
HspAI	GCGC	1 cut(s)	300
KpnI	GGTACC	1 cut(s)	457
Kzo9I	GATC	3 cut(s)	531, 697, 909
LmnI	GCTCC	2 cut(s)	625, 914
Lsp1109I	GCAGC	3 cut(s)	218, 915, 967
LweI	GCATC	3 cut(s)	426, 665, 807
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	2 cut(s)	329, 897
MaeIII	GTNAC	7 cut(s)	308, 601, 627, 985, 1027, 1054, 1066
MalI	GATC	3 cut(s)	533, 699, 911
MboI	GATC	3 cut(s)	531, 697, 909
MboII	GAAGA	2 cut(s)	660, 973
MhlI	GDGCHC	2 cut(s)	225, 767
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	3 cut(s)	361, 432, 714
MluNI	TGGCCA	1 cut(s)	134
MlyI	GAGTC	1 cut(s)	618
MnlI	CCTC	5 cut(s)	77, 79, 292, 377, 471
Mox20I	TGGCCA	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	4 cut(s)	72, 737, 1011, 1050
MslI	CAYNNNNRTG	1 cut(s)	252
Msp20I	TGGCCA	1 cut(s)	134
MspI	CCGG	1 cut(s)	815
MwoI	GCNNNNNNNGC	2 cut(s)	155, 589
NdeII	GATC	3 cut(s)	531, 697, 909
NheI	GCTAGC	1 cut(s)	145
NlaIII	CATG	7 cut(s)	128, 139, 518, 582, 711, 795, 832
NlaIV	GGNNCC	2 cut(s)	455, 813
NmeAIII	GCCGAG	2 cut(s)	746, 848
NmuCI	GTSAC	5 cut(s)	601, 627, 985, 1027, 1054
NspI	RCATGY	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	586, 1060
PinAI	ACCGGT	1 cut(s)	814
PkrI	GCNGC	3 cut(s)	208, 905, 982
PleI	GAGTC	1 cut(s)	617
PpsI	GAGTC	1 cut(s)	617
Psp124BI	GAGCTC	1 cut(s)	767
PspEI	GGTNACC	2 cut(s)	601, 1027
PspN4I	GGNNCC	2 cut(s)	455, 813
PspPI	GGNCC	1 cut(s)	812
PstI	CTGCAG	2 cut(s)	594, 985
PstNI	CAGNNNCTG	1 cut(s)	1079
RsaI	GTAC	4 cut(s)	17, 260, 455, 1008
RsaNI	GTAC	4 cut(s)	16, 259, 454, 1007
RseI	CAYNNNNRTG	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	767
SaqAI	TTAA	4 cut(s)	72, 737, 1011, 1050
SatI	GCNGC	3 cut(s)	207, 904, 981
Sau3AI	GATC	3 cut(s)	531, 697, 909
Sau96I	GGNCC	1 cut(s)	812
ScaI	AGTACT	1 cut(s)	1008
SchI	GAGTC	1 cut(s)	618
SduI	GDGCHC	2 cut(s)	225, 767
SfaNI	GCATC	3 cut(s)	426, 665, 807
SfcI	CTRYAG	4 cut(s)	590, 748, 981, 1071
SinI	GGWCC	1 cut(s)	812
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	3 cut(s)	83, 95, 304
SmoI	CTYRAG	3 cut(s)	83, 95, 304
Sse9I	AATT	3 cut(s)	361, 432, 714
SspMI	CTAG	1 cut(s)	146
SstI	GAGCTC	1 cut(s)	767
TaaI	ACNGT	3 cut(s)	292, 752, 864
TaiI	ACGT	2 cut(s)	332, 900
TasI	AATT	3 cut(s)	361, 432, 714
TatI	WGTACW	2 cut(s)	258, 1006
TfiI	GAWTC	2 cut(s)	586, 1060
Tru1I	TTAA	4 cut(s)	72, 737, 1011, 1050
Tru9I	TTAA	4 cut(s)	72, 737, 1011, 1050
TscAI	CASTG	6 cut(s)	271, 489, 508, 636, 757, 867
TseFI	GTSAC	5 cut(s)	601, 627, 985, 1027, 1054
TseI	GCWGC	3 cut(s)	206, 903, 980
Tsp45I	GTSAC	5 cut(s)	601, 627, 985, 1027, 1054
TspDTI	ATGAA	3 cut(s)	567, 696, 1011
TspGWI	ACGGA	1 cut(s)	980
TspRI	CASTG	6 cut(s)	271, 489, 508, 636, 757, 867
VpaK11BI	GGWCC	1 cut(s)	812
XagI	CCTNNNNNAGG	1 cut(s)	461
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	1 cut(s)	128
XmiI	GTMKAC	2 cut(s)	612, 747
XspI	CTAG	1 cut(s)	146
ZrmI	AGTACT	1 cut(s)	1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.