Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003064

Physical Location & Seq

Genomic Coordinates Reverse (-)

14858851 .. 14860194

Gene Structure 1344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g11780.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGAAGGATGCACTCATTACTTGGCAATGGTACTGGTTCAGCTGATACACGGCGGATCAAACGTCCTTATAAAATTGTCCCTTCAGGACGGACTCAATCAGATTGTCTTCGTGGTTTACAGGCATGTTCTTGCGATGGTTTTGATCGGACCATTTGCCTTTGTGCTTGAAAGGACGCAGAGGCCTTCTCTCTCGTTTTCAGTAGCTGCAAATATTTTCCTGCTTGCGTTGTTAGGGCCTACCATCTATCTGAATGTATACTTCGCTGGTTTAGCATACACTTCTGCAACAGTTGCAAGTGCCTTGAGCAATGTTATCCCCGCTTTGACGTTTCTGATGGCAGTACTTCTTGGGATGGAGAAATTGAAGATTAGAAGCACTCGAGGCCAAGCGAAGGTGGCTGGTACAGTCTTCTGCATTGGCGGTTCTCTTATTTTCACATTCTGGAAAGGAGGATACCTGTTTAAAGGTGTGGAAAAGCCACTGATAAGTGTTTACAACGCAAAGTGGTCTGTTGGCCAGATCAAGCATGTTCAGGAAAACTGGATCAAGGGTTCTGCTCTTATTCTGATTAGCCACATTGCATGTAGTGCGTGGCTAATCCTCCAGGCTGTGGTGTCCAAAGTCTACCCAGCTCCATTGTCACTAACCACCATCATGTGCTTTTTTGCATCACTGCAATCTTCTTTCCTTGCCTTGTTTTTCGCAAGAAATCCAAGTTTCATGGAGACTGGAGTGGAACCTGCAGCTGTTTACCATCGTCTACTTCGGAGTTCTGACCACAGCATTAGTCTATTACCTGCAAACATGGAGCATCAGTCACAAGGGACCAGTTTTTGCAGCCATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

284

Amino Acids

30.91

Weight (kDa)

9.44

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003064)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10210 FvH4_5g10220
malus_domestica	MD06G1126900.v1.1 MD06G1127200.v1.1 MD14G1142400.v1.1
prunus_persica	Prupe.4G100300_v2.0.a1 Prupe.5G136500_v2.0.a1 Prupe.5G136500_v2.0.a1
pyrus_communis	pycom06g11660 pycom14g11780 pycom14g11810
rosa_chinensis	RchiOBHm_Chr7g0188001 RchiOBHm_Chr7g0188011
rosa_laevigata	RLG00000004733 RLG00000004734 RLG00000004735
rosa_multiflora	Rmu_co8503989.1_g000001 Rmu_sc0003624.1_g000020 Rmu_ssc0000422.1_g000012
rosa_roxburghii	Rroxscaffold_3G00266810 Rroxscaffold_3G00266820
rosa_rugosa	Rorug06G0486700 Rorug06G0486700 Rorug06G0486800 Rorug06G0486900
rosa_samantha	Rh7AG091600 Rh7AG091700 Rh7BG093100 Rh7BG093200 Rh7BG093300 Rh7CG092400 Rh7CG092500 Rh7CG092700 Rh7DG093800 Rh7DG093900
rosa_wichuraiana	Rw7G007900 Rw7G007910 Rw7G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	71
Acc36I	ACCTGC	2 cut(s)	751, 808
AccB7I	CCANNNNNTGG	1 cut(s)	613
AccI	GTMKAC	3 cut(s)	258, 627, 763
AciI	CCGC	3 cut(s)	54, 321, 423
AclWI	GGATC	2 cut(s)	64, 554
AcoI	YGGCCR	1 cut(s)	517
AcuI	CTGAAG	1 cut(s)	68
AfaI	GTAC	3 cut(s)	33, 345, 406
AfiI	CCNNNNNNNGG	2 cut(s)	394, 613
AgsI	TTSAA	2 cut(s)	170, 367
AjnI	CCWGG	1 cut(s)	606
AloI	GAACNNNNNNTCC	2 cut(s)	538, 570
AluBI	AGCT	4 cut(s)	43, 206, 635, 749
AluI	AGCT	4 cut(s)	43, 206, 635, 749
Alw26I	GTCTC	1 cut(s)	722
AlwI	GGATC	2 cut(s)	64, 554
AlwNI	CAGNNNCTG	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	381
AoxI	GGCC	4 cut(s)	182, 236, 385, 517
ApeKI	GCWGC	3 cut(s)	206, 746, 840
AspS9I	GGNCC	3 cut(s)	149, 236, 828
AvaI	CYCGRG	1 cut(s)	381
AvaII	GGWCC	2 cut(s)	149, 828
BalI	TGGCCA	1 cut(s)	519
BbsI	GAAGAC	2 cut(s)	100, 403
BbvI	GCAGC	2 cut(s)	193, 758
BccI	CCATC	6 cut(s)	130, 251, 331, 349, 662, 765
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	608
BciVI	GTATCC	1 cut(s)	449
BcoDI	GTCTC	1 cut(s)	722
BfmI	CTRYAG	1 cut(s)	744
BfuAI	ACCTGC	2 cut(s)	751, 808
BfuI	GTATCC	1 cut(s)	449
BisI	GCNGC	3 cut(s)	207, 747, 841
BlsI	GCNGC	3 cut(s)	208, 748, 842
BmcAI	AGTACT	1 cut(s)	345
Bme1390I	CCNGG	1 cut(s)	608
Bme18I	GGWCC	2 cut(s)	149, 828
BmeT110I	CYCGRG	1 cut(s)	381
BmgT120I	GGNCC	3 cut(s)	149, 236, 828
BmiI	GGNNCC	2 cut(s)	741, 829
BmrFI	CCNGG	1 cut(s)	608
BmsI	GCATC	2 cut(s)	680, 823
BpiI	GAAGAC	2 cut(s)	100, 403
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
BpmI	CTGGAG	2 cut(s)	590, 753
BpuEI	CTTGAG	1 cut(s)	325
BsaXI	ACNNNNNCTCC	2 cut(s)	803, 833
Bsc4I	CCNNNNNNNGG	2 cut(s)	394, 613
Bse1I	ACTGG	4 cut(s)	39, 548, 736, 831
Bse3DI	GCAATG	3 cut(s)	33, 316, 579
BseBI	CCWGG	1 cut(s)	608
BseGI	GGATG	2 cut(s)	14, 360
BseLI	CCNNNNNNNGG	2 cut(s)	394, 613
BseMI	GCAATG	3 cut(s)	33, 316, 579
BseNI	ACTGG	4 cut(s)	39, 548, 736, 831
BseXI	GCAGC	2 cut(s)	193, 758
BseYI	CCCAGC	1 cut(s)	631
BshFI	GGCC	4 cut(s)	184, 238, 387, 519
BsiHKCI	CYCGRG	1 cut(s)	381
BslFI	GGGAC	2 cut(s)	64, 841
BslI	CCNNNNNNNGG	2 cut(s)	394, 613
BsmAI	GTCTC	1 cut(s)	722
BsmFI	GGGAC	2 cut(s)	64, 841
BsnI	GGCC	4 cut(s)	184, 238, 387, 519
BsoBI	CYCGRG	1 cut(s)	381
Bsp143I	GATC	4 cut(s)	56, 144, 522, 546
BspACI	CCGC	3 cut(s)	54, 321, 423
BspANI	GGCC	4 cut(s)	184, 238, 387, 519
BspLI	GGNNCC	2 cut(s)	741, 829
BspMAI	CTGCAG	1 cut(s)	748
BspMI	ACCTGC	2 cut(s)	751, 808
BspPI	GGATC	2 cut(s)	64, 554
BsrDI	GCAATG	3 cut(s)	33, 316, 579
BsrI	ACTGG	4 cut(s)	39, 548, 736, 831
BssMI	GATC	4 cut(s)	56, 144, 522, 546
BssNAI	GTATAC	1 cut(s)	259
Bst1107I	GTATAC	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	608
Bst4CI	ACNGT	2 cut(s)	292, 409
BstAPI	GCANNNNNTGC	2 cut(s)	293, 590
BstC8I	GCNNGC	1 cut(s)	225
BstF5I	GGATG	2 cut(s)	14, 360
BstKTI	GATC	4 cut(s)	59, 147, 525, 549
BstMAI	GTCTC	1 cut(s)	722
BstMBI	GATC	4 cut(s)	56, 144, 522, 546
BstMWI	GCNNNNNNNGC	5 cut(s)	272, 293, 384, 398, 590
BstNI	CCWGG	1 cut(s)	608
BstNSI	RCATGY	3 cut(s)	128, 533, 588
BstSCI	CCNGG	1 cut(s)	606
BstSFI	CTRYAG	1 cut(s)	744
BstV1I	GCAGC	2 cut(s)	193, 758
BstV2I	GAAGAC	2 cut(s)	100, 403
BstZ17I	GTATAC	1 cut(s)	259
BsuI	GTATCC	1 cut(s)	449
BsuRI	GGCC	4 cut(s)	184, 238, 387, 519
BtgZI	GCGATG	1 cut(s)	149
BtsCI	GGATG	2 cut(s)	14, 360
BtsI	GCAGTG	1 cut(s)	674
BtsIMutI	CAGTG	2 cut(s)	482, 674
BveI	ACCTGC	2 cut(s)	751, 808
Cac8I	GCNNGC	1 cut(s)	225
CaiI	CAGNNNCTG	1 cut(s)	206
Cfr13I	GGNCC	3 cut(s)	149, 236, 828
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	3 cut(s)	32, 344, 405
CviAII	CATG	7 cut(s)	125, 530, 585, 658, 724, 808, 845
CviQI	GTAC	3 cut(s)	32, 344, 405
DpnI	GATC	4 cut(s)	58, 146, 524, 548
DpnII	GATC	4 cut(s)	56, 144, 522, 546
DraI	TTTAAA	1 cut(s)	466
EaeI	YGGCCR	1 cut(s)	517
EciI	GGCGGA	1 cut(s)	69
Eco147I	AGGCCT	1 cut(s)	184
Eco47I	GGWCC	2 cut(s)	149, 828
Eco57I	CTGAAG	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	381
EcoO109I	RGGNCCY	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	606
FaeI	CATG	7 cut(s)	128, 533, 588, 661, 727, 811, 848
FaqI	GGGAC	2 cut(s)	64, 841
FatI	CATG	7 cut(s)	124, 529, 584, 657, 723, 807, 844
FauI	CCCGC	1 cut(s)	328
FblI	GTMKAC	3 cut(s)	258, 627, 763
Fnu4HI	GCNGC	3 cut(s)	207, 747, 841
FokI	GGATG	2 cut(s)	21, 367
Fsp4HI	GCNGC	3 cut(s)	207, 747, 841
GluI	GCNGC	3 cut(s)	207, 747, 841
GsaI	CCCAGC	1 cut(s)	635
GsuI	CTGGAG	2 cut(s)	590, 753
HaeIII	GGCC	4 cut(s)	184, 238, 387, 519
HgaI	GACGC	1 cut(s)	184
Hin1II	CATG	7 cut(s)	128, 533, 588, 661, 727, 811, 848
HinfI	GANTC	1 cut(s)	93
Hpy166II	GTNNAC	6 cut(s)	118, 259, 496, 628, 754, 764
Hpy188I	TCNGA	7 cut(s)	102, 149, 252, 336, 570, 771, 778
Hpy188III	TCNNGA	3 cut(s)	86, 445, 536
Hpy8I	GTNNAC	6 cut(s)	118, 259, 496, 628, 754, 764
HpyAV	CCTTC	3 cut(s)	92, 195, 388
HpyCH4III	ACNGT	2 cut(s)	292, 409
HpyCH4IV	ACGT	2 cut(s)	63, 329
HpyF10VI	GCNNNNNNNGC	5 cut(s)	272, 293, 384, 398, 590
HpySE526I	ACGT	2 cut(s)	63, 329
Hsp92II	CATG	7 cut(s)	128, 533, 588, 661, 727, 811, 848
Kzo9I	GATC	4 cut(s)	56, 144, 522, 546
LmnI	GCTCC	2 cut(s)	640, 811
Lsp1109I	GCAGC	2 cut(s)	193, 758
LweI	GCATC	2 cut(s)	680, 823
MaeII	ACGT	2 cut(s)	63, 329
MaeIII	GTNAC	2 cut(s)	642, 819
MalI	GATC	4 cut(s)	58, 146, 524, 548
MboI	GATC	4 cut(s)	56, 144, 522, 546
MboII	GAAGA	4 cut(s)	100, 379, 403, 675
MlsI	TGGCCA	1 cut(s)	519
MluCI	AATT	2 cut(s)	74, 362
MluNI	TGGCCA	1 cut(s)	519
MlyI	GAGTC	1 cut(s)	87
MnlI	CCTC	4 cut(s)	174, 377, 446, 614
Mox20I	TGGCCA	1 cut(s)	519
MscI	TGGCCA	1 cut(s)	519
MseI	TTAA	1 cut(s)	465
MslI	CAYNNNNRTG	1 cut(s)	656
Msp20I	TGGCCA	1 cut(s)	519
MspA1I	CMGCKG	2 cut(s)	43, 749
MspR9I	CCNGG	1 cut(s)	608
MvaI	CCWGG	1 cut(s)	608
MwoI	GCNNNNNNNGC	5 cut(s)	272, 293, 384, 398, 590
NdeII	GATC	4 cut(s)	56, 144, 522, 546
NlaIII	CATG	7 cut(s)	128, 533, 588, 661, 727, 811, 848
NlaIV	GGNNCC	2 cut(s)	741, 829
NmuCI	GTSAC	2 cut(s)	642, 819
NspI	RCATGY	3 cut(s)	128, 533, 588
PaeR7I	CTCGAG	1 cut(s)	381
PceI	AGGCCT	1 cut(s)	184
PflMI	CCANNNNNTGG	1 cut(s)	613
PkrI	GCNGC	3 cut(s)	208, 748, 842
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
PsiI	TTATAA	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	606
PspFI	CCCAGC	1 cut(s)	631
PspGI	CCWGG	1 cut(s)	606
PspN4I	GGNNCC	2 cut(s)	741, 829
PspPI	GGNCC	3 cut(s)	149, 236, 828
PspXI	VCTCGAGB	1 cut(s)	381
PstI	CTGCAG	1 cut(s)	748
PstNI	CAGNNNCTG	1 cut(s)	206
PvuII	CAGCTG	2 cut(s)	43, 749
RsaI	GTAC	3 cut(s)	33, 345, 406
RsaNI	GTAC	3 cut(s)	32, 344, 405
RseI	CAYNNNNRTG	1 cut(s)	656
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	3 cut(s)	207, 747, 841
Sau3AI	GATC	4 cut(s)	56, 144, 522, 546
Sau96I	GGNCC	3 cut(s)	149, 236, 828
ScaI	AGTACT	1 cut(s)	345
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	608
SfaNI	GCATC	2 cut(s)	680, 823
SfcI	CTRYAG	1 cut(s)	744
Sfr274I	CTCGAG	1 cut(s)	381
SinI	GGWCC	2 cut(s)	149, 828
SlaI	CTCGAG	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	656
SmlI	CTYRAG	2 cut(s)	304, 381
SmoI	CTYRAG	2 cut(s)	304, 381
Sse9I	AATT	2 cut(s)	74, 362
SseBI	AGGCCT	1 cut(s)	184
SsiI	CCGC	3 cut(s)	54, 321, 423
SspI	AATATT	1 cut(s)	214
StuI	AGGCCT	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	606
TaaI	ACNGT	2 cut(s)	292, 409
TaiI	ACGT	2 cut(s)	66, 332
TaqI	TCGA	1 cut(s)	382
TasI	AATT	2 cut(s)	74, 362
TatI	WGTACW	1 cut(s)	343
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	2 cut(s)	489, 681
TseFI	GTSAC	2 cut(s)	642, 819
TseI	GCWGC	3 cut(s)	206, 746, 840
Tsp45I	GTSAC	2 cut(s)	642, 819
TspDTI	ATGAA	1 cut(s)	712
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	2 cut(s)	489, 681
Van91I	CCANNNNNTGG	1 cut(s)	613
VpaK11BI	GGWCC	2 cut(s)	149, 828
XceI	RCATGY	3 cut(s)	128, 533, 588
XhoI	CTCGAG	1 cut(s)	381
XmiI	GTMKAC	3 cut(s)	258, 627, 763
ZrmI	AGTACT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.