Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003064

Physical Location & Seq

Genomic Coordinates Reverse (-)

5112912 .. 5114298

Gene Structure 1387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G100300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGTACTGGTTCAACTCATATATGGTGGATCAAACATCCTCATAAAATTCTCCCTTGCAGAAGGACTCAATCCAATTGTCTTCGTCGTTTACGGCGGCATCAGGAAACAAAGGCCTTCACTCTCATTTTCTGTAGCTGCCAAATTTTTTGTGCTTGCCTTGTTTGGAACCACCATCCATCTGAATGTGTACTATGCTGGTTTAGCATACACTTCTCCAACAGTTGCATGTGCCTTGAGTAATGTTATTCCCAGCTTGGCATTTCTAATGGCAGTTCTACTAGGGTTGGAGAAGTTGAAGTTTAGAACTGCTAGAGGTCAAGCTAAGGTGGATGGCACACTTTTCTGCATTGGTGGTTCTCTTGTTTTCACTTTCTGGAAAGGAGGATACCTATTTAAAGGTTTTGTAAAGAGGCCACTGATAAATATATCTGTTGGTGAGATGAGGCATGTTAAGGAAAACTGGATCAAGGGGGCTCTTCTTATTCTGACGAGTCACATTAATATTGCATGGAGTGCATGGCTAATCCTCCAGGCTGTGGTCTCCGAAGTCTACACTGCTCGATTATCGCTAACCACGATGATATACTTTTTCGCGTCGTTGCAATCTTCTTTTCTTGATCTGTTTTTCGCAAGAAATCCAATTTCGTGGAGACTGGAGTGGAACCTGCAACTTTCAACCATCGTCTACTGCGGAGTTGTAATCTCAGCATTGGCCTACTACCTGCAAACATGGTGCATCAGTTACAAGGGACCAGTCTTTGCAGCTATGTTTAGTCCACTTCAATCATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

265

Amino Acids

29.36

Weight (kDa)

9.74

Isoelectric Point (pI)

35.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003064)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10210 FvH4_5g10220
malus_domestica	MD06G1126900.v1.1 MD06G1127200.v1.1 MD14G1142400.v1.1
prunus_persica	Prupe.4G100300_v2.0.a1 Prupe.5G136500_v2.0.a1 Prupe.5G136500_v2.0.a1
pyrus_communis	pycom06g11660 pycom14g11780 pycom14g11810
rosa_chinensis	RchiOBHm_Chr7g0188001 RchiOBHm_Chr7g0188011
rosa_laevigata	RLG00000004733 RLG00000004734 RLG00000004735
rosa_multiflora	Rmu_co8503989.1_g000001 Rmu_sc0003624.1_g000020 Rmu_ssc0000422.1_g000012
rosa_roxburghii	Rroxscaffold_3G00266810 Rroxscaffold_3G00266820
rosa_rugosa	Rorug06G0486700 Rorug06G0486700 Rorug06G0486800 Rorug06G0486900
rosa_samantha	Rh7AG091600 Rh7AG091700 Rh7BG093100 Rh7BG093200 Rh7BG093300 Rh7CG092400 Rh7CG092500 Rh7CG092700 Rh7DG093800 Rh7DG093900
rosa_wichuraiana	Rw7G007900 Rw7G007910 Rw7G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	675, 732
AccB7I	CCANNNNNTGG	1 cut(s)	538
AccI	GTMKAC	2 cut(s)	552, 687
AccII	CGCG	1 cut(s)	596
AciI	CCGC	2 cut(s)	96, 693
AclWI	GGATC	2 cut(s)	37, 473
AcsI	RAATTY	2 cut(s)	47, 143
AfaI	GTAC	2 cut(s)	6, 191
AfiI	CCNNNNNNNGG	1 cut(s)	538
AgsI	TTSAA	4 cut(s)	14, 298, 678, 785
AjnI	CCWGG	1 cut(s)	531
AluBI	AGCT	4 cut(s)	137, 255, 323, 767
AluI	AGCT	4 cut(s)	137, 255, 323, 767
Alw26I	GTCTC	2 cut(s)	547, 646
AlwI	GGATC	2 cut(s)	37, 473
AoxI	GGCC	3 cut(s)	113, 413, 714
ApeKI	GCWGC	2 cut(s)	137, 764
ApoI	RAATTY	2 cut(s)	47, 143
AseI	ATTAAT	1 cut(s)	501
AspS9I	GGNCC	1 cut(s)	752
AsuHPI	GGTGA	1 cut(s)	449
AvaII	GGWCC	1 cut(s)	752
BanII	GRGCYC	1 cut(s)	478
BbsI	GAAGAC	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	124, 776
BccI	CCATC	4 cut(s)	182, 186, 326, 689
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	533
BciVI	GTATCC	1 cut(s)	380
BcoDI	GTCTC	2 cut(s)	547, 646
BfaI	CTAG	2 cut(s)	281, 312
BfmI	CTRYAG	1 cut(s)	132
BfuAI	ACCTGC	2 cut(s)	675, 732
BfuI	GTATCC	1 cut(s)	380
BisI	GCNGC	3 cut(s)	97, 138, 765
BlsI	GCNGC	3 cut(s)	98, 139, 766
Bme1390I	CCNGG	1 cut(s)	533
Bme18I	GGWCC	1 cut(s)	752
BmgT120I	GGNCC	1 cut(s)	752
BmiI	GGNNCC	3 cut(s)	169, 665, 753
BmrFI	CCNGG	1 cut(s)	533
BmsI	GCATC	2 cut(s)	108, 747
BpiI	GAAGAC	1 cut(s)	73
BpmI	CTGGAG	2 cut(s)	515, 677
Bpu10I	CCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	256
BsaI	GGTCTC	1 cut(s)	547
Bsc4I	CCNNNNNNNGG	1 cut(s)	538
Bse1I	ACTGG	4 cut(s)	12, 467, 660, 755
BseBI	CCWGG	1 cut(s)	533
BseGI	GGATG	3 cut(s)	36, 174, 337
BseLI	CCNNNNNNNGG	1 cut(s)	538
BseMII	CTCAG	1 cut(s)	720
BseNI	ACTGG	4 cut(s)	12, 467, 660, 755
BseXI	GCAGC	2 cut(s)	124, 776
BseYI	CCCAGC	1 cut(s)	251
Bsh1236I	CGCG	1 cut(s)	596
BshFI	GGCC	3 cut(s)	115, 415, 716
BslFI	GGGAC	1 cut(s)	765
BslI	CCNNNNNNNGG	1 cut(s)	538
BsmAI	GTCTC	2 cut(s)	547, 646
BsmFI	GGGAC	1 cut(s)	765
BsnI	GGCC	3 cut(s)	115, 415, 716
Bso31I	GGTCTC	1 cut(s)	547
Bsp1286I	GDGCHC	1 cut(s)	478
Bsp143I	GATC	3 cut(s)	29, 465, 619
BspACI	CCGC	2 cut(s)	96, 693
BspANI	GGCC	3 cut(s)	115, 415, 716
BspCNI	CTCAG	1 cut(s)	719
BspFNI	CGCG	1 cut(s)	596
BspLI	GGNNCC	3 cut(s)	169, 665, 753
BspMI	ACCTGC	2 cut(s)	675, 732
BspPI	GGATC	2 cut(s)	37, 473
BspQI	GCTCTTC	1 cut(s)	483
BspTNI	GGTCTC	1 cut(s)	547
BsrI	ACTGG	4 cut(s)	12, 467, 660, 755
BssMI	GATC	3 cut(s)	29, 465, 619
Bst2UI	CCWGG	1 cut(s)	533
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	483
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	2 cut(s)	324, 706
BstF5I	GGATG	3 cut(s)	36, 174, 337
BstFNI	CGCG	1 cut(s)	596
BstKTI	GATC	3 cut(s)	32, 468, 622
BstMAI	GTCTC	2 cut(s)	547, 646
BstMBI	GATC	3 cut(s)	29, 465, 619
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 515
BstNI	CCWGG	1 cut(s)	533
BstNSI	RCATGY	2 cut(s)	231, 452
BstSCI	CCNGG	1 cut(s)	531
BstSFI	CTRYAG	1 cut(s)	132
BstUI	CGCG	1 cut(s)	596
BstV1I	GCAGC	2 cut(s)	124, 776
BstV2I	GAAGAC	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	648
BsuI	GTATCC	1 cut(s)	380
BsuRI	GGCC	3 cut(s)	115, 415, 716
BtsCI	GGATG	3 cut(s)	36, 174, 337
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	2 cut(s)	416, 555
BveI	ACCTGC	2 cut(s)	675, 732
Cac8I	GCNNGC	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	752
CseI	GACGC	1 cut(s)	585
Csp6I	GTAC	2 cut(s)	5, 190
CviAII	CATG	5 cut(s)	228, 449, 510, 519, 732
CviQI	GTAC	2 cut(s)	5, 190
DdeI	CTNAG	2 cut(s)	324, 706
DpnI	GATC	3 cut(s)	31, 467, 621
DpnII	GATC	3 cut(s)	29, 465, 619
DraI	TTTAAA	1 cut(s)	397
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
Eco147I	AGGCCT	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	478
Eco31I	GGTCTC	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	752
EcoRII	CCWGG	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	478
FaeI	CATG	5 cut(s)	231, 452, 513, 522, 735
FaqI	GGGAC	1 cut(s)	765
FatI	CATG	5 cut(s)	227, 448, 509, 518, 731
FblI	GTMKAC	2 cut(s)	552, 687
Fnu4HI	GCNGC	3 cut(s)	97, 138, 765
FokI	GGATG	3 cut(s)	23, 161, 344
FriOI	GRGCYC	1 cut(s)	478
Fsp4HI	GCNGC	3 cut(s)	97, 138, 765
FspBI	CTAG	2 cut(s)	281, 312
GluI	GCNGC	3 cut(s)	97, 138, 765
GsaI	CCCAGC	1 cut(s)	255
GsuI	CTGGAG	2 cut(s)	515, 677
HaeIII	GGCC	3 cut(s)	115, 415, 716
HgaI	GACGC	1 cut(s)	585
Hin1II	CATG	5 cut(s)	231, 452, 513, 522, 735
HinfI	GANTC	2 cut(s)	66, 493
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	5 cut(s)	91, 190, 553, 688, 779
Hpy188I	TCNGA	3 cut(s)	183, 489, 547
Hpy188III	TCNNGA	3 cut(s)	103, 376, 617
Hpy8I	GTNNAC	5 cut(s)	91, 190, 553, 688, 779
Hpy99I	CGWCG	2 cut(s)	89, 601
HpyAV	CCTTC	2 cut(s)	56, 126
HpyCH4III	ACNGT	1 cut(s)	223
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 515
HpyF3I	CTNAG	2 cut(s)	324, 706
Hsp92II	CATG	5 cut(s)	231, 452, 513, 522, 735
Kzo9I	GATC	3 cut(s)	29, 465, 619
LguI	GCTCTTC	1 cut(s)	483
Lsp1109I	GCAGC	2 cut(s)	124, 776
LweI	GCATC	2 cut(s)	108, 747
MaeI	CTAG	2 cut(s)	281, 312
MaeIII	GTNAC	2 cut(s)	494, 743
MalI	GATC	3 cut(s)	31, 467, 621
MboI	GATC	3 cut(s)	29, 465, 619
MboII	GAAGA	3 cut(s)	73, 470, 600
MfeI	CAATTG	1 cut(s)	75
MhlI	GDGCHC	1 cut(s)	478
MluCI	AATT	4 cut(s)	47, 75, 143, 642
MlyI	GAGTC	2 cut(s)	60, 502
MmeI	TCCRAC	2 cut(s)	242, 267
MnlI	CCTC	6 cut(s)	50, 308, 377, 405, 438, 539
MseI	TTAA	3 cut(s)	396, 453, 501
MslI	CAYNNNNRTG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	533
MunI	CAATTG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	533
MvnI	CGCG	1 cut(s)	596
MwoI	GCNNNNNNNGC	2 cut(s)	203, 515
NdeII	GATC	3 cut(s)	29, 465, 619
NlaIII	CATG	5 cut(s)	231, 452, 513, 522, 735
NlaIV	GGNNCC	3 cut(s)	169, 665, 753
NmuCI	GTSAC	1 cut(s)	494
NspI	RCATGY	2 cut(s)	231, 452
PceI	AGGCCT	1 cut(s)	115
PciSI	GCTCTTC	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	1 cut(s)	575
PflMI	CCANNNNNTGG	1 cut(s)	538
PkrI	GCNGC	3 cut(s)	98, 139, 766
PleI	GAGTC	2 cut(s)	60, 501
PpsI	GAGTC	2 cut(s)	60, 501
PshBI	ATTAAT	1 cut(s)	501
Psp6I	CCWGG	1 cut(s)	531
PspFI	CCCAGC	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	531
PspN4I	GGNNCC	3 cut(s)	169, 665, 753
PspPI	GGNCC	1 cut(s)	752
RsaI	GTAC	2 cut(s)	6, 191
RsaNI	GTAC	2 cut(s)	5, 190
RseI	CAYNNNNRTG	1 cut(s)	183
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	3 cut(s)	396, 453, 501
SatI	GCNGC	3 cut(s)	97, 138, 765
Sau3AI	GATC	3 cut(s)	29, 465, 619
Sau96I	GGNCC	1 cut(s)	752
SchI	GAGTC	2 cut(s)	60, 502
ScrFI	CCNGG	1 cut(s)	533
SduI	GDGCHC	1 cut(s)	478
SfaNI	GCATC	2 cut(s)	108, 747
SfcI	CTRYAG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	752
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	4 cut(s)	47, 75, 143, 642
SseBI	AGGCCT	1 cut(s)	115
SsiI	CCGC	2 cut(s)	96, 693
SspI	AATATT	1 cut(s)	505
SspMI	CTAG	2 cut(s)	281, 312
StuI	AGGCCT	1 cut(s)	115
StyD4I	CCNGG	1 cut(s)	531
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	562
TasI	AATT	4 cut(s)	47, 75, 143, 642
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	1 cut(s)	99
Tru1I	TTAA	3 cut(s)	396, 453, 501
Tru9I	TTAA	3 cut(s)	396, 453, 501
TscAI	CASTG	2 cut(s)	423, 562
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	2 cut(s)	137, 764
Tsp45I	GTSAC	1 cut(s)	494
TspRI	CASTG	2 cut(s)	423, 562
Van91I	CCANNNNNTGG	1 cut(s)	538
VpaK11BI	GGWCC	1 cut(s)	752
VspI	ATTAAT	1 cut(s)	501
XapI	RAATTY	2 cut(s)	47, 143
XceI	RCATGY	2 cut(s)	231, 452
XmiI	GTMKAC	2 cut(s)	552, 687
XspI	CTAG	2 cut(s)	281, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.