Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003064

Physical Location & Seq

Genomic Coordinates Reverse (-)

59981642 .. 59983649

Gene Structure 2008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00266810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGAGGGATGCAGGTACTACGTGGTAATGATACTGGTTCAGCTGGCCTATGGTGGATCAAGCGTCCTCGTAAAACTTTCTCTCGAGGAAGGTCTCAAACCAGTTGTCTTTGTGGTTTATAGGCATGTTATGGCCATGTTTTTGCTAGCACCATTTGCTTATTTCCTTGAAAAGAAGCAGAGACCTTCACTCTCATTTTCAATAGCTGCAAAAGTTTTTGTGCTGACATTATTTGGGACTACCATCCATCTCAATGTGTACTATACTGGTTTAGCATACACCTCCCCCACAGTTGCTTGCGCCTTGAGTAATGTAGTCCCAAGTTTGACGTTTGCAATGGCGGTTCTGCTTCGGATGGAGAATCTGAATATTAAAAGTGCCAGAGGTCAAGCAAAGGTAGTTGGTACACTTCTTTGCATCGGTGGTTCTCTAATGTTCACTTTCTGGAAAGGGTACCTATTCAAGGGTTTTGTTGAGAAGCCACTGATCAGTGTATATAGCACTGAGTTGAAGCATGGTAATGAAAACTGGATCAAGGGTTCTGCTCTTATTCTGACTAGTCACGTAGTATGGTGTTCATGGCTGATTCTTCAGGTGATTAAATCATTGATTTCAATGACATCTTATATAATAAGAAACACATCTAACTTAAGTGGTTTGTTCAACATGGCCTCATGGTTATTTGGCTCACAGGCTGTGGTCTGCAAAGTCTACCCTGCTCCATTGTCACTGACCACCCTCATATGCTTTTTCGCATCGCTACAATCTTCCATTGTTGCTTTGTTTTTTGCAAGAGATCAAGCTTCATGGAGACTTGATTCGAACGTGCAACTTTTAACAATCGCCTATAGTGGATTTGTGAGCTCAGCATTAGTCTATTACCTGCAAACATGGTGCATCAGTTACAAGGGACCAGTTTTTACAGCTATGTTTAGCCCCCTACAAGTCATTATAGTTGCACTGTTCTCGGCATTCGCTTTTGCAGAGCGACTTCACGTCGGCAGCTTGATAGGAGCAATTCTCATTATAGTTGGCCTTTACTGTTTTCTATGGGGAAAGAAGAAAGATGGTCTTGTTGCTGAACTCACAGAGAATGAAAAAGCAGTACTTAATGATGATAAGGTGCTCGCCATTTCCCTGAACGATATTAAAGTGACCAATCCTGTGACTATAGATCCTGTAACTACAGAAAGAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

399

Amino Acids

44.1

Weight (kDa)

9.19

Isoelectric Point (pI)

25.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	7 - 146	1.5e-13	EamA-like transporter family
EamA	PF00892	225 - 350	8.2e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003064)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10210 FvH4_5g10220
malus_domestica	MD06G1126900.v1.1 MD06G1127200.v1.1 MD14G1142400.v1.1
prunus_persica	Prupe.4G100300_v2.0.a1 Prupe.5G136500_v2.0.a1 Prupe.5G136500_v2.0.a1
pyrus_communis	pycom06g11660 pycom14g11780 pycom14g11810
rosa_chinensis	RchiOBHm_Chr7g0188001 RchiOBHm_Chr7g0188011
rosa_laevigata	RLG00000004733 RLG00000004734 RLG00000004735
rosa_multiflora	Rmu_co8503989.1_g000001 Rmu_sc0003624.1_g000020 Rmu_ssc0000422.1_g000012
rosa_roxburghii	Rroxscaffold_3G00266810 Rroxscaffold_3G00266820
rosa_rugosa	Rorug06G0486700 Rorug06G0486700 Rorug06G0486800 Rorug06G0486900
rosa_samantha	Rh7AG091600 Rh7AG091700 Rh7BG093100 Rh7BG093200 Rh7BG093300 Rh7CG092400 Rh7CG092500 Rh7CG092700 Rh7DG093800 Rh7DG093900
rosa_wichuraiana	Rw7G007900 Rw7G007910 Rw7G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	3, 891
Acc65I	GGTACC	1 cut(s)	453
AccB1I	GGYRCC	1 cut(s)	453
AccI	GTMKAC	1 cut(s)	711
AciI	CCGC	1 cut(s)	341
AclWI	GGATC	3 cut(s)	64, 539, 1169
AcoI	YGGCCR	1 cut(s)	132
AcuI	CTGAAG	1 cut(s)	575
AfaI	GTAC	5 cut(s)	17, 260, 406, 455, 1107
AfiI	CCNNNNNNNGG	1 cut(s)	463
AflII	CTTAAG	1 cut(s)	649
AgsI	TTSAA	6 cut(s)	170, 201, 463, 511, 615, 664
AhdI	GACNNNNNGTC	1 cut(s)	995
AhlI	ACTAGT	1 cut(s)	557
AjiI	CACGTC	1 cut(s)	997
AloI	GAACNNNNNNTCC	2 cut(s)	523, 555
AluBI	AGCT	6 cut(s)	43, 206, 803, 864, 926, 1005
AluI	AGCT	6 cut(s)	43, 206, 803, 864, 926, 1005
Alw21I	GWGCWC	2 cut(s)	866, 1128
Alw26I	GTCTC	3 cut(s)	98, 175, 805
AlwI	GGATC	3 cut(s)	64, 539, 1169
Ama87I	CYCGRG	1 cut(s)	83
AoxI	GGCC	4 cut(s)	45, 132, 669, 1033
ApeKI	GCWGC	2 cut(s)	206, 1002
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
Asp718I	GGTACC	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	911
AsuHPI	GGTGA	1 cut(s)	607
AsuII	TTCGAA	1 cut(s)	821
AsuNHI	GCTAGC	1 cut(s)	145
AvaI	CYCGRG	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	911
BalI	TGGCCA	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	453
BanII	GRGCYC	1 cut(s)	866
Bbv12I	GWGCWC	2 cut(s)	866, 1128
BbvI	GCAGC	2 cut(s)	193, 1014
BccI	CCATC	4 cut(s)	251, 255, 349, 1061
BcgI	CGANNNNNNTGC	2 cut(s)	948, 982
BclI	TGATCA	1 cut(s)	486
BcoDI	GTCTC	3 cut(s)	98, 175, 805
BcuI	ACTAGT	1 cut(s)	557
BfaI	CTAG	2 cut(s)	146, 558
BfmI	CTRYAG	3 cut(s)	847, 1170, 1185
BfrI	CTTAAG	1 cut(s)	649
BfuAI	ACCTGC	2 cut(s)	3, 891
BisI	GCNGC	2 cut(s)	207, 1003
BlpI	GCTNAGC	1 cut(s)	865
BlsI	GCNGC	2 cut(s)	208, 1004
BmcAI	AGTACT	1 cut(s)	1107
Bme18I	GGWCC	1 cut(s)	911
BmeRI	GACNNNNNGTC	1 cut(s)	995
BmeT110I	CYCGRG	1 cut(s)	83
BmgBI	CACGTC	1 cut(s)	997
BmgT120I	GGNCC	1 cut(s)	911
BmiI	GGNNCC	2 cut(s)	455, 912
BmsI	GCATC	3 cut(s)	426, 764, 906
BmtI	GCTAGC	1 cut(s)	149
BplI	GAGNNNNNCTC	2 cut(s)	1005, 1037
Bpu1102I	GCTNAGC	1 cut(s)	865
Bpu14I	TTCGAA	1 cut(s)	821
BpuEI	CTTGAG	1 cut(s)	325
BsaAI	YACGTR	2 cut(s)	22, 565
BsaI	GGTCTC	2 cut(s)	98, 175
Bsc4I	CCNNNNNNNGG	1 cut(s)	463
Bse1I	ACTGG	5 cut(s)	39, 101, 271, 533, 914
Bse3DI	GCAATG	1 cut(s)	342
BseGI	GGATG	3 cut(s)	14, 243, 360
BseLI	CCNNNNNNNGG	1 cut(s)	463
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	495, 879
BseNI	ACTGG	5 cut(s)	39, 101, 271, 533, 914
BseXI	GCAGC	2 cut(s)	193, 1014
BshFI	GGCC	4 cut(s)	47, 134, 671, 1035
BshNI	GGYRCC	1 cut(s)	453
BsiHKAI	GWGCWC	2 cut(s)	866, 1128
BsiHKCI	CYCGRG	1 cut(s)	83
BslFI	GGGAC	3 cut(s)	250, 302, 924
BslI	CCNNNNNNNGG	1 cut(s)	463
BsmAI	GTCTC	3 cut(s)	98, 175, 805
BsmFI	GGGAC	3 cut(s)	250, 302, 924
BsmI	GAATGC	1 cut(s)	971
BsnI	GGCC	4 cut(s)	47, 134, 671, 1035
Bso31I	GGTCTC	2 cut(s)	98, 175
BsoBI	CYCGRG	1 cut(s)	83
Bsp119I	TTCGAA	1 cut(s)	821
Bsp1286I	GDGCHC	2 cut(s)	866, 1128
Bsp143I	GATC	5 cut(s)	56, 486, 531, 796, 1174
Bsp1720I	GCTNAGC	1 cut(s)	865
BspACI	CCGC	1 cut(s)	341
BspANI	GGCC	4 cut(s)	47, 134, 671, 1035
BspCNI	CTCAG	2 cut(s)	496, 878
BspLI	GGNNCC	2 cut(s)	455, 912
BspMI	ACCTGC	2 cut(s)	3, 891
BspOI	GCTAGC	1 cut(s)	149
BspPI	GGATC	3 cut(s)	64, 539, 1169
BspT104I	TTCGAA	1 cut(s)	821
BspT107I	GGYRCC	1 cut(s)	453
BspTI	CTTAAG	1 cut(s)	649
BspTNI	GGTCTC	2 cut(s)	98, 175
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	5 cut(s)	39, 101, 271, 533, 914
BssMI	GATC	5 cut(s)	56, 486, 531, 796, 1174
Bst4CI	ACNGT	3 cut(s)	292, 963, 1043
BstAFI	CTTAAG	1 cut(s)	649
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstBAI	YACGTR	2 cut(s)	22, 565
BstBI	TTCGAA	1 cut(s)	821
BstC8I	GCNNGC	4 cut(s)	45, 147, 298, 1128
BstDEI	CTNAG	2 cut(s)	504, 865
BstENI	CCTNNNNNAGG	1 cut(s)	461
BstF5I	GGATG	3 cut(s)	14, 243, 360
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	5 cut(s)	59, 489, 534, 799, 1177
BstMAI	GTCTC	3 cut(s)	98, 175, 805
BstMBI	GATC	5 cut(s)	56, 486, 531, 796, 1174
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNSI	RCATGY	1 cut(s)	128
BstSFI	CTRYAG	3 cut(s)	847, 1170, 1185
BstV1I	GCAGC	2 cut(s)	193, 1014
BstX2I	RGATCY	1 cut(s)	1174
BstYI	RGATCY	1 cut(s)	1174
BsuRI	GGCC	4 cut(s)	47, 134, 671, 1035
BtgZI	GCGATG	1 cut(s)	741
BtrI	CACGTC	1 cut(s)	997
BtsCI	GGATG	3 cut(s)	14, 243, 360
BtsIMutI	CAGTG	5 cut(s)	482, 496, 501, 728, 959
BveI	ACCTGC	2 cut(s)	3, 891
Cac8I	GCNNGC	4 cut(s)	45, 147, 298, 1128
CfoI	GCGC	1 cut(s)	302
Cfr13I	GGNCC	1 cut(s)	911
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	5 cut(s)	16, 259, 405, 454, 1106
CviAII	CATG	8 cut(s)	125, 136, 515, 579, 667, 675, 807, 891
CviQI	GTAC	5 cut(s)	16, 259, 405, 454, 1106
DdeI	CTNAG	2 cut(s)	504, 865
DpnI	GATC	5 cut(s)	58, 488, 533, 798, 1176
DpnII	GATC	5 cut(s)	56, 486, 531, 796, 1174
DriI	GACNNNNNGTC	1 cut(s)	995
EaeI	YGGCCR	1 cut(s)	132
Eam1105I	GACNNNNNGTC	1 cut(s)	995
Ecl136II	GAGCTC	1 cut(s)	864
Eco24I	GRGCYC	1 cut(s)	866
Eco31I	GGTCTC	2 cut(s)	98, 175
Eco47I	GGWCC	1 cut(s)	911
Eco53kI	GAGCTC	1 cut(s)	864
Eco57I	CTGAAG	1 cut(s)	575
Eco88I	CYCGRG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	864
EcoNI	CCTNNNNNAGG	1 cut(s)	461
EcoT38I	GRGCYC	1 cut(s)	866
FaeI	CATG	8 cut(s)	128, 139, 518, 582, 670, 678, 810, 894
FalI	AAGNNNNNCTT	4 cut(s)	1056, 1088, 1092, 1124
FaqI	GGGAC	3 cut(s)	250, 302, 924
FatI	CATG	8 cut(s)	124, 135, 514, 578, 666, 674, 806, 890
FauNDI	CATATG	1 cut(s)	743
FbaI	TGATCA	1 cut(s)	486
FblI	GTMKAC	1 cut(s)	711
Fnu4HI	GCNGC	2 cut(s)	207, 1003
FokI	GGATG	3 cut(s)	21, 230, 367
FriOI	GRGCYC	1 cut(s)	866
Fsp4HI	GCNGC	2 cut(s)	207, 1003
FspBI	CTAG	2 cut(s)	146, 558
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	2 cut(s)	207, 1003
HaeIII	GGCC	4 cut(s)	47, 134, 671, 1035
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	8 cut(s)	128, 139, 518, 582, 670, 678, 810, 894
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HindIII	AAGCTT	1 cut(s)	801
HinfI	GANTC	3 cut(s)	361, 586, 818
HphI	GGTGA	1 cut(s)	607
Hpy166II	GTNNAC	4 cut(s)	259, 407, 438, 712
Hpy188I	TCNGA	3 cut(s)	354, 366, 555
Hpy188III	TCNNGA	2 cut(s)	83, 445
Hpy8I	GTNNAC	4 cut(s)	259, 407, 438, 712
Hpy99I	CGWCG	1 cut(s)	1001
HpyAV	CCTTC	2 cut(s)	83, 195
HpyCH4III	ACNGT	3 cut(s)	292, 963, 1043
HpyCH4IV	ACGT	5 cut(s)	21, 329, 564, 825, 996
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	2 cut(s)	504, 865
HpySE526I	ACGT	5 cut(s)	21, 329, 564, 825, 996
Hsp92II	CATG	8 cut(s)	128, 139, 518, 582, 670, 678, 810, 894
HspAI	GCGC	1 cut(s)	300
KpnI	GGTACC	1 cut(s)	457
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	5 cut(s)	56, 486, 531, 796, 1174
LmnI	GCTCC	2 cut(s)	724, 1013
Lsp1109I	GCAGC	2 cut(s)	193, 1014
LweI	GCATC	3 cut(s)	426, 764, 906
MaeI	CTAG	2 cut(s)	146, 558
MaeII	ACGT	5 cut(s)	21, 329, 564, 825, 996
MaeIII	GTNAC	6 cut(s)	560, 726, 902, 1153, 1165, 1180
MalI	GATC	5 cut(s)	58, 488, 533, 798, 1176
MboI	GATC	5 cut(s)	56, 486, 531, 796, 1174
MboII	GAAGA	3 cut(s)	581, 759, 1072
MflI	RGATCY	1 cut(s)	1174
MhlI	GDGCHC	2 cut(s)	866, 1128
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	1 cut(s)	1017
MluNI	TGGCCA	1 cut(s)	134
MnlI	CCTC	6 cut(s)	77, 79, 292, 377, 682, 749
Mox20I	TGGCCA	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	6 cut(s)	372, 600, 650, 836, 1110, 1149
MslI	CAYNNNNRTG	2 cut(s)	252, 519
Msp20I	TGGCCA	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	43
MspCI	CTTAAG	1 cut(s)	649
Mva1269I	GAATGC	1 cut(s)	971
MwoI	GCNNNNNNNGC	1 cut(s)	155
NdeI	CATATG	1 cut(s)	743
NdeII	GATC	5 cut(s)	56, 486, 531, 796, 1174
NheI	GCTAGC	1 cut(s)	145
NlaIII	CATG	8 cut(s)	128, 139, 518, 582, 670, 678, 810, 894
NlaIV	GGNNCC	2 cut(s)	455, 912
NmeAIII	GCCGAG	1 cut(s)	947
NmuCI	GTSAC	4 cut(s)	560, 726, 1153, 1165
NspI	RCATGY	1 cut(s)	128
NspV	TTCGAA	1 cut(s)	821
PaeR7I	CTCGAG	1 cut(s)	83
PctI	GAATGC	1 cut(s)	971
PfeI	GAWTC	3 cut(s)	361, 586, 818
PkrI	GCNGC	2 cut(s)	208, 1004
Ppu21I	YACGTR	2 cut(s)	22, 565
Psp124BI	GAGCTC	1 cut(s)	866
PspN4I	GGNNCC	2 cut(s)	455, 912
PspPI	GGNCC	1 cut(s)	911
PsuI	RGATCY	1 cut(s)	1174
PvuII	CAGCTG	1 cut(s)	43
RsaI	GTAC	5 cut(s)	17, 260, 406, 455, 1107
RsaNI	GTAC	5 cut(s)	16, 259, 405, 454, 1106
RseI	CAYNNNNRTG	2 cut(s)	252, 519
SacI	GAGCTC	1 cut(s)	866
SaqAI	TTAA	6 cut(s)	372, 600, 650, 836, 1110, 1149
SatI	GCNGC	2 cut(s)	207, 1003
Sau3AI	GATC	5 cut(s)	56, 486, 531, 796, 1174
Sau96I	GGNCC	1 cut(s)	911
ScaI	AGTACT	1 cut(s)	1107
SduI	GDGCHC	2 cut(s)	866, 1128
SfaNI	GCATC	3 cut(s)	426, 764, 906
SfcI	CTRYAG	3 cut(s)	847, 1170, 1185
Sfr274I	CTCGAG	1 cut(s)	83
SfuI	TTCGAA	1 cut(s)	821
SinI	GGWCC	1 cut(s)	911
SlaI	CTCGAG	1 cut(s)	83
SmiMI	CAYNNNNRTG	2 cut(s)	252, 519
SmlI	CTYRAG	3 cut(s)	83, 304, 649
SmoI	CTYRAG	3 cut(s)	83, 304, 649
SpeI	ACTAGT	1 cut(s)	557
Sse9I	AATT	1 cut(s)	1017
SsiI	CCGC	1 cut(s)	341
SspI	AATATT	1 cut(s)	370
SspMI	CTAG	2 cut(s)	146, 558
SstI	GAGCTC	1 cut(s)	866
TaaI	ACNGT	3 cut(s)	292, 963, 1043
TaiI	ACGT	5 cut(s)	24, 332, 567, 828, 999
TaqI	TCGA	2 cut(s)	84, 821
TasI	AATT	1 cut(s)	1017
TatI	WGTACW	2 cut(s)	258, 1105
TfiI	GAWTC	3 cut(s)	361, 586, 818
Tru1I	TTAA	6 cut(s)	372, 600, 650, 836, 1110, 1149
Tru9I	TTAA	6 cut(s)	372, 600, 650, 836, 1110, 1149
TscAI	CASTG	5 cut(s)	489, 496, 508, 735, 966
TseFI	GTSAC	4 cut(s)	560, 726, 1153, 1165
TseI	GCWGC	2 cut(s)	206, 1002
Tsp45I	GTSAC	4 cut(s)	560, 726, 1153, 1165
TspDTI	ATGAA	4 cut(s)	537, 567, 795, 1110
TspRI	CASTG	5 cut(s)	489, 496, 508, 735, 966
Vha464I	CTTAAG	1 cut(s)	649
VpaK11BI	GGWCC	1 cut(s)	911
XagI	CCTNNNNNAGG	1 cut(s)	461
XceI	RCATGY	1 cut(s)	128
XhoI	CTCGAG	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	711
XspI	CTAG	2 cut(s)	146, 558
ZrmI	AGTACT	1 cut(s)	1107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.