Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003624.1

Orthogroup ID

OG0003064

Physical Location & Seq

Genomic Coordinates Forward (+)

75905 .. 77817

Gene Structure 1913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003624.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atggaccctcatatatccatggagggatgcagttattacttggcaatggtactggtccagctagcatatggtggatcaaacgtcctcataaaactttctcttgcccaaggactcaatccaatcgtgtttgtggtttataggcatgttattgccatgctcttgctaggaccatttgcttatgttcttgagaggatggagaaattgcacattaaaagtaccagaagtcaagcaaaggttgttggtacacttctctgcatcggtggttctcttattttcaccttctggaaaggaggacacctattcaagggttttgttgagaggcccctgataactgcatttaacactgagttacggcatggtaagcaaaaccggatcaagggttctgctctaattctgactagtcatatagcatggtgttcatggctaattctccaggctgtggtctccaaagtctaccctgctccgttgtcactaaccaccatcatatgctttttcgcatcattgcaatcttcctttcttgccttgttctttgcaagaaatccagcttcgtggagacttgagtggaacctacagcttttaaccatcatctactctggagttgtgttgtcagcattagtctattacctgcaagcgtggtgcatcagttacaagggaccagtttttgcggctatgtttagccccctacaagtcattatagtggcaatgttctcggcagttgcttttgcagagcgacttcactttggcagcttgatcggagcatttctcattatcgttggcctttactgtgtgctatggggaaagaggcaagatggtcttgttgctgaacccccacagagtggacatggagttcttaacaatgataaagtgctcgcaatttccaagattgatattcaagtgatacatcctgtaactagagaaagtgcatgttcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

310

Amino Acids

34.3

Weight (kDa)

9.41

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003064)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10210 FvH4_5g10220
malus_domestica	MD06G1126900.v1.1 MD06G1127200.v1.1 MD14G1142400.v1.1
prunus_persica	Prupe.4G100300_v2.0.a1 Prupe.5G136500_v2.0.a1 Prupe.5G136500_v2.0.a1
pyrus_communis	pycom06g11660 pycom14g11780 pycom14g11810
rosa_chinensis	RchiOBHm_Chr7g0188001 RchiOBHm_Chr7g0188011
rosa_laevigata	RLG00000004733 RLG00000004734 RLG00000004735
rosa_multiflora	Rmu_co8503989.1_g000001 Rmu_sc0003624.1_g000020 Rmu_ssc0000422.1_g000012
rosa_roxburghii	Rroxscaffold_3G00266810 Rroxscaffold_3G00266820
rosa_rugosa	Rorug06G0486700 Rorug06G0486700 Rorug06G0486800 Rorug06G0486900
rosa_samantha	Rh7AG091600 Rh7AG091700 Rh7BG093100 Rh7BG093200 Rh7BG093300 Rh7CG092400 Rh7CG092500 Rh7CG092700 Rh7DG093800 Rh7DG093900
rosa_wichuraiana	Rw7G007900 Rw7G007910 Rw7G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	633
AccB7I	CCANNNNNTGG	2 cut(s)	439, 836
AccI	GTMKAC	1 cut(s)	453
AciI	CCGC	1 cut(s)	665
AclWI	GGATC	2 cut(s)	82, 380
AdeI	CACNNNGTG	1 cut(s)	836
AfaI	GTAC	3 cut(s)	51, 217, 244
AfiI	CCNNNNNNNGG	4 cut(s)	304, 376, 439, 836
AgsI	TTSAA	2 cut(s)	304, 893
AhlI	ACTAGT	1 cut(s)	398
AjnI	CCWGG	1 cut(s)	432
AloI	GAACNNNNNNTCC	4 cut(s)	364, 396, 831, 863
AluBI	AGCT	4 cut(s)	61, 545, 574, 747
AluI	AGCT	4 cut(s)	61, 545, 574, 747
Alw21I	GWGCWC	1 cut(s)	870
Alw26I	GTCTC	2 cut(s)	448, 547
AlwI	GGATC	2 cut(s)	82, 380
AoxI	GGCC	2 cut(s)	320, 775
ApeKI	GCWGC	1 cut(s)	744
AspS9I	GGNCC	5 cut(s)	4, 55, 167, 321, 653
AsuHPI	GGTGA	1 cut(s)	268
AsuNHI	GCTAGC	1 cut(s)	61
AvaII	GGWCC	4 cut(s)	4, 55, 167, 653
Bbv12I	GWGCWC	1 cut(s)	870
BbvI	GCAGC	1 cut(s)	756
BccI	CCATC	4 cut(s)	187, 488, 590, 803
BceAI	ACGGC	1 cut(s)	368
BcgI	CGANNNNNNTGC	4 cut(s)	690, 724, 733, 767
BciT130I	CCWGG	1 cut(s)	434
BcoDI	GTCTC	2 cut(s)	448, 547
BcuI	ACTAGT	1 cut(s)	398
BfaI	CTAG	4 cut(s)	62, 164, 399, 912
BfmI	CTRYAG	1 cut(s)	569
BfuAI	ACCTGC	1 cut(s)	633
BisI	GCNGC	2 cut(s)	666, 745
BlsI	GCNGC	2 cut(s)	667, 746
Bme1390I	CCNGG	1 cut(s)	434
Bme18I	GGWCC	4 cut(s)	4, 55, 167, 653
BmgT120I	GGNCC	5 cut(s)	4, 55, 167, 321, 653
BmiI	GGNNCC	4 cut(s)	6, 323, 566, 654
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	4 cut(s)	17, 264, 506, 648
BmtI	GCTAGC	1 cut(s)	65
BplI	GAGNNNNNCTC	2 cut(s)	747, 779
BpmI	CTGGAG	2 cut(s)	416, 615
BpuEI	CTTGAG	2 cut(s)	206, 578
BsaI	GGTCTC	1 cut(s)	448
BsaJI	CCNNGG	2 cut(s)	18, 106
BsaWI	WCCGGW	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	4 cut(s)	304, 376, 439, 836
Bse1I	ACTGG	2 cut(s)	57, 656
Bse3DI	GCAATG	3 cut(s)	51, 500, 708
BseBI	CCWGG	1 cut(s)	434
BseDI	CCNNGG	2 cut(s)	18, 106
BseGI	GGATG	3 cut(s)	32, 198, 901
BseLI	CCNNNNNNNGG	4 cut(s)	304, 376, 439, 836
BseMI	GCAATG	3 cut(s)	51, 500, 708
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	2 cut(s)	57, 656
BseXI	GCAGC	1 cut(s)	756
BshFI	GGCC	2 cut(s)	322, 777
BsiHKAI	GWGCWC	1 cut(s)	870
BsiSI	CCGG	1 cut(s)	370
BslFI	GGGAC	1 cut(s)	666
BslI	CCNNNNNNNGG	4 cut(s)	304, 376, 439, 836
BsmAI	GTCTC	2 cut(s)	448, 547
BsmFI	GGGAC	1 cut(s)	666
BsnI	GGCC	2 cut(s)	322, 777
Bso31I	GGTCTC	1 cut(s)	448
Bsp1286I	GDGCHC	1 cut(s)	870
Bsp143I	GATC	3 cut(s)	74, 372, 750
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	1 cut(s)	665
BspANI	GGCC	2 cut(s)	322, 777
BspCNI	CTCAG	1 cut(s)	337
BspLI	GGNNCC	4 cut(s)	6, 323, 566, 654
BspMI	ACCTGC	1 cut(s)	633
BspOI	GCTAGC	1 cut(s)	65
BspPI	GGATC	2 cut(s)	82, 380
BspTNI	GGTCTC	1 cut(s)	448
BsrDI	GCAATG	3 cut(s)	51, 500, 708
BsrI	ACTGG	2 cut(s)	57, 656
BssECI	CCNNGG	2 cut(s)	18, 106
BssMI	GATC	3 cut(s)	74, 372, 750
BssT1I	CCWWGG	2 cut(s)	18, 106
Bst2UI	CCWGG	1 cut(s)	434
Bst4CI	ACNGT	1 cut(s)	785
BstC8I	GCNNGC	3 cut(s)	63, 630, 870
BstDEI	CTNAG	1 cut(s)	345
BstDSI	CCRYGG	1 cut(s)	18
BstENI	CCTNNNNNAGG	1 cut(s)	302
BstF5I	GGATG	3 cut(s)	32, 198, 901
BstKTI	GATC	3 cut(s)	77, 375, 753
BstMAI	GTCTC	2 cut(s)	448, 547
BstMBI	GATC	3 cut(s)	74, 372, 750
BstMWI	GCNNNNNNNGC	1 cut(s)	361
BstNI	CCWGG	1 cut(s)	434
BstNSI	RCATGY	2 cut(s)	146, 927
BstSCI	CCNGG	1 cut(s)	432
BstSFI	CTRYAG	1 cut(s)	569
BstV1I	GCAGC	1 cut(s)	756
BstXI	CCANNNNNNTGG	1 cut(s)	549
BsuRI	GGCC	2 cut(s)	322, 777
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	3 cut(s)	32, 198, 901
BtsIMutI	CAGTG	1 cut(s)	342
BveI	ACCTGC	1 cut(s)	633
Cac8I	GCNNGC	3 cut(s)	63, 630, 870
Cfr13I	GGNCC	5 cut(s)	4, 55, 167, 321, 653
Csp6I	GTAC	3 cut(s)	50, 216, 243
CviAII	CATG	8 cut(s)	19, 143, 154, 356, 411, 420, 842, 924
CviQI	GTAC	3 cut(s)	50, 216, 243
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	3 cut(s)	76, 374, 752
DpnII	GATC	3 cut(s)	74, 372, 750
DraIII	CACNNNGTG	1 cut(s)	836
Eco130I	CCWWGG	2 cut(s)	18, 106
Eco31I	GGTCTC	1 cut(s)	448
Eco47I	GGWCC	4 cut(s)	4, 55, 167, 653
EcoNI	CCTNNNNNAGG	1 cut(s)	302
EcoO109I	RGGNCCY	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	432
EcoT14I	CCWWGG	2 cut(s)	18, 106
ErhI	CCWWGG	2 cut(s)	18, 106
FaeI	CATG	8 cut(s)	22, 146, 157, 359, 414, 423, 845, 927
FalI	AAGNNNNNCTT	2 cut(s)	798, 830
FaqI	GGGAC	1 cut(s)	666
FatI	CATG	8 cut(s)	18, 142, 153, 355, 410, 419, 841, 923
FauNDI	CATATG	2 cut(s)	67, 485
FblI	GTMKAC	1 cut(s)	453
Fnu4HI	GCNGC	2 cut(s)	666, 745
FokI	GGATG	3 cut(s)	39, 205, 888
Fsp4HI	GCNGC	2 cut(s)	666, 745
FspBI	CTAG	4 cut(s)	62, 164, 399, 912
GluI	GCNGC	2 cut(s)	666, 745
GsuI	CTGGAG	2 cut(s)	416, 615
HaeIII	GGCC	2 cut(s)	322, 777
HapII	CCGG	1 cut(s)	370
Hin1II	CATG	8 cut(s)	22, 146, 157, 359, 414, 423, 845, 927
HinfI	GANTC	1 cut(s)	111
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	3 cut(s)	245, 454, 839
Hpy188I	TCNGA	2 cut(s)	396, 755
Hpy188III	TCNNGA	3 cut(s)	185, 283, 594
Hpy8I	GTNNAC	3 cut(s)	245, 454, 839
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	1 cut(s)	785
HpyCH4IV	ACGT	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	1 cut(s)	361
HpyF3I	CTNAG	1 cut(s)	345
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	8 cut(s)	22, 146, 157, 359, 414, 423, 845, 927
Kzo9I	GATC	3 cut(s)	74, 372, 750
LmnI	GCTCC	2 cut(s)	466, 755
Lsp1109I	GCAGC	1 cut(s)	756
LweI	GCATC	4 cut(s)	17, 264, 506, 648
MaeI	CTAG	4 cut(s)	62, 164, 399, 912
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	4 cut(s)	348, 468, 644, 907
MalI	GATC	3 cut(s)	76, 374, 752
MboI	GATC	3 cut(s)	74, 372, 750
MboII	GAAGA	1 cut(s)	501
MhlI	GDGCHC	1 cut(s)	870
MluCI	AATT	4 cut(s)	200, 390, 426, 873
MlyI	GAGTC	1 cut(s)	105
MnlI	CCTC	7 cut(s)	16, 18, 95, 183, 284, 312, 795
MseI	TTAA	4 cut(s)	210, 339, 578, 852
MslI	CAYNNNNRTG	1 cut(s)	695
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	1 cut(s)	361
NcoI	CCATGG	1 cut(s)	18
NdeI	CATATG	2 cut(s)	67, 485
NdeII	GATC	3 cut(s)	74, 372, 750
NheI	GCTAGC	1 cut(s)	61
NlaIII	CATG	8 cut(s)	22, 146, 157, 359, 414, 423, 845, 927
NlaIV	GGNNCC	4 cut(s)	6, 323, 566, 654
NmeAIII	GCCGAG	1 cut(s)	689
NmuCI	GTSAC	1 cut(s)	468
NspI	RCATGY	2 cut(s)	146, 927
PflMI	CCANNNNNTGG	2 cut(s)	439, 836
PkrI	GCNGC	2 cut(s)	667, 746
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	432
PspN4I	GGNNCC	4 cut(s)	6, 323, 566, 654
PspPI	GGNCC	5 cut(s)	4, 55, 167, 321, 653
RsaI	GTAC	3 cut(s)	51, 217, 244
RsaNI	GTAC	3 cut(s)	50, 216, 243
RseI	CAYNNNNRTG	1 cut(s)	695
SaqAI	TTAA	4 cut(s)	210, 339, 578, 852
SatI	GCNGC	2 cut(s)	666, 745
Sau3AI	GATC	3 cut(s)	74, 372, 750
Sau96I	GGNCC	5 cut(s)	4, 55, 167, 321, 653
SchI	GAGTC	1 cut(s)	105
ScrFI	CCNGG	1 cut(s)	434
SduI	GDGCHC	1 cut(s)	870
SfaNI	GCATC	4 cut(s)	17, 264, 506, 648
SfcI	CTRYAG	1 cut(s)	569
SinI	GGWCC	4 cut(s)	4, 55, 167, 653
SmiMI	CAYNNNNRTG	1 cut(s)	695
SmlI	CTYRAG	2 cut(s)	185, 557
SmoI	CTYRAG	2 cut(s)	185, 557
SpeI	ACTAGT	1 cut(s)	398
Sse9I	AATT	4 cut(s)	200, 390, 426, 873
SsiI	CCGC	1 cut(s)	665
SspMI	CTAG	4 cut(s)	62, 164, 399, 912
StyD4I	CCNGG	1 cut(s)	432
StyI	CCWWGG	2 cut(s)	18, 106
TaaI	ACNGT	1 cut(s)	785
TaiI	ACGT	1 cut(s)	84
TasI	AATT	4 cut(s)	200, 390, 426, 873
TauI	GCSGC	1 cut(s)	668
Tru1I	TTAA	4 cut(s)	210, 339, 578, 852
Tru9I	TTAA	4 cut(s)	210, 339, 578, 852
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	1 cut(s)	468
TseI	GCWGC	1 cut(s)	744
Tsp45I	GTSAC	1 cut(s)	468
TspDTI	ATGAA	2 cut(s)	408, 918
TspGWI	ACGGA	1 cut(s)	453
TspRI	CASTG	1 cut(s)	349
Van91I	CCANNNNNTGG	2 cut(s)	439, 836
VpaK11BI	GGWCC	4 cut(s)	4, 55, 167, 653
XagI	CCTNNNNNAGG	1 cut(s)	302
XceI	RCATGY	2 cut(s)	146, 927
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	453
XspI	CTAG	4 cut(s)	62, 164, 399, 912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.