Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003064

Physical Location & Seq

Genomic Coordinates Forward (+)

7233609 .. 7235630

Gene Structure 2022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G007900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGAGGGATGCAGTTACTACTTGGCAATGGTACTGGTCCAGCTAGCATATGGTGGATCAAACGTCCTCATAAAACTTTCTCTTGCCCAAGGACTCAATCCAATCGTGTTTGTGGTTTATAGGCATGTTATCGCCATGCTCTTGCTAGGACCATTTGCTTATGTTCTTGAGAGGAAGCAGAGACCTTCGCTCTCAATTTCAATAGCTGCAAAAGTTTTTGTGCTTGCATTATTTGGGACTACTATCCATCTCAATGTGTACTATGCTGGTTTAGCATACATTTCCCCAACATCTGCTTGCGCCCTGAGTAATGTAATCCCAAGTTTGACGTTTTTATTGGCCGTTCTGCTTCGGATGGAGAAATTGCACATTAAAAGTACCAGAAGTCAAGCAAAGGTTGTTGGTACACTTCTCTGCATCGGTGGTTCTCTTATTTTCACCTTCTGGAAAGGAGGACACCTATTCAAGGGTTTTGTTGAGAGGCCCCTGATAACTGCATTTAACACTGAGTTACGGCATGGTAAGCAAAACCGGATCAAGGGTTCTGCTCTAATTCTGACTAGTCATATAGCATGGTGTTCATGGCTAATTCTCCAGGCTGTGATCTCCAAAGTCTACCCTGCTCCGTTGTCACTAACCACCATCATATGCTTTTTCGCATCATTACAATCTTCCTTTCTTGCCTTGTTCTTTGCAAGAAATCCAGCTTCGTGGAGACTTGAGTGGAACCTACAGCTTTTAACCATCATCTACTCTGGAGTTGTGTTGTCAGCATTAGTCTATTACCTGCAAGCGTGGTGCATCAGTTACAAGGGACCAGTTTTTGCGGCTATGTTTAGCCCCCTACAAGTCATTATAGTGGCAATGTTCTCGGCAGTTGCTTTTGCAGAGCGACTTCACTTTGGCAGCTTGATCGGAGCATTTCTCATTATCGTTGGCCTTTACTGTGTGCTATGGGGAAAGAGGCAAGATGGTCTTGTTGCTGAACCCCCACAGAGTGGACAAGGAGTTCTTAACAATGATAAAGTGCTCGCAATTTCCAAGATTGATATTCAAGTGATACATCCTGTAACTAGAGAAAGTACATGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

364

Amino Acids

40.04

Weight (kDa)

9.62

Isoelectric Point (pI)

35.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	7 - 146	1.4e-14	EamA-like transporter family
EamA	PF00892	180 - 318	4.9e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003064)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10210 FvH4_5g10220
malus_domestica	MD06G1126900.v1.1 MD06G1127200.v1.1 MD14G1142400.v1.1
prunus_persica	Prupe.4G100300_v2.0.a1 Prupe.5G136500_v2.0.a1 Prupe.5G136500_v2.0.a1
pyrus_communis	pycom06g11660 pycom14g11780 pycom14g11810
rosa_chinensis	RchiOBHm_Chr7g0188001 RchiOBHm_Chr7g0188011
rosa_laevigata	RLG00000004733 RLG00000004734 RLG00000004735
rosa_multiflora	Rmu_co8503989.1_g000001 Rmu_sc0003624.1_g000020 Rmu_ssc0000422.1_g000012
rosa_roxburghii	Rroxscaffold_3G00266810 Rroxscaffold_3G00266820
rosa_rugosa	Rorug06G0486700 Rorug06G0486700 Rorug06G0486800 Rorug06G0486900
rosa_samantha	Rh7AG091600 Rh7AG091700 Rh7BG093100 Rh7BG093200 Rh7BG093300 Rh7CG092400 Rh7CG092500 Rh7CG092700 Rh7DG093800 Rh7DG093900
rosa_wichuraiana	Rw7G007900 Rw7G007910 Rw7G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	795
AccB7I	CCANNNNNTGG	1 cut(s)	998
AccI	GTMKAC	1 cut(s)	615
AciI	CCGC	1 cut(s)	827
AclWI	GGATC	2 cut(s)	64, 542
AcoI	YGGCCR	1 cut(s)	339
AdeI	CACNNNGTG	1 cut(s)	998
AfaI	GTAC	5 cut(s)	33, 260, 379, 406, 1084
AfiI	CCNNNNNNNGG	3 cut(s)	466, 538, 998
AflIII	ACRYGT	1 cut(s)	1085
AgsI	TTSAA	3 cut(s)	201, 466, 1055
AhlI	ACTAGT	1 cut(s)	560
AjnI	CCWGG	1 cut(s)	594
AloI	GAACNNNNNNTCC	4 cut(s)	526, 558, 993, 1025
AluBI	AGCT	5 cut(s)	43, 206, 707, 736, 909
AluI	AGCT	5 cut(s)	43, 206, 707, 736, 909
Alw21I	GWGCWC	1 cut(s)	1032
Alw26I	GTCTC	2 cut(s)	175, 709
AlwI	GGATC	2 cut(s)	64, 542
AoxI	GGCC	3 cut(s)	339, 482, 937
ApeKI	GCWGC	2 cut(s)	206, 906
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	4 cut(s)	37, 149, 483, 815
AsuHPI	GGTGA	1 cut(s)	430
AsuNHI	GCTAGC	1 cut(s)	43
AvaII	GGWCC	3 cut(s)	37, 149, 815
Bbv12I	GWGCWC	1 cut(s)	1032
BbvI	GCAGC	2 cut(s)	193, 918
BccI	CCATC	5 cut(s)	255, 349, 650, 752, 965
BceAI	ACGGC	2 cut(s)	326, 530
BcgI	CGANNNNNNTGC	4 cut(s)	852, 886, 895, 929
BciT130I	CCWGG	1 cut(s)	596
BcoDI	GTCTC	2 cut(s)	175, 709
BcuI	ACTAGT	1 cut(s)	560
BfaI	CTAG	4 cut(s)	44, 146, 561, 1074
BfmI	CTRYAG	1 cut(s)	731
BfuAI	ACCTGC	1 cut(s)	795
BisI	GCNGC	3 cut(s)	207, 828, 907
BlsI	GCNGC	3 cut(s)	208, 829, 908
Bme1390I	CCNGG	1 cut(s)	596
Bme18I	GGWCC	3 cut(s)	37, 149, 815
BmgT120I	GGNCC	4 cut(s)	37, 149, 483, 815
BmiI	GGNNCC	3 cut(s)	485, 728, 816
BmrFI	CCNGG	1 cut(s)	596
BmsI	GCATC	3 cut(s)	426, 668, 810
BmtI	GCTAGC	1 cut(s)	47
BplI	GAGNNNNNCTC	2 cut(s)	909, 941
BpmI	CTGGAG	2 cut(s)	578, 777
BpuEI	CTTGAG	2 cut(s)	188, 740
BsaI	GGTCTC	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	88
BsaWI	WCCGGW	1 cut(s)	531
Bsc4I	CCNNNNNNNGG	3 cut(s)	466, 538, 998
Bse1I	ACTGG	2 cut(s)	39, 818
Bse3DI	GCAATG	2 cut(s)	33, 870
BseBI	CCWGG	1 cut(s)	596
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	3 cut(s)	14, 360, 1063
BseLI	CCNNNNNNNGG	3 cut(s)	466, 538, 998
BseMI	GCAATG	2 cut(s)	33, 870
BseMII	CTCAG	2 cut(s)	296, 498
BseNI	ACTGG	2 cut(s)	39, 818
BseXI	GCAGC	2 cut(s)	193, 918
BshFI	GGCC	3 cut(s)	341, 484, 939
BsiHKAI	GWGCWC	1 cut(s)	1032
BsiSI	CCGG	1 cut(s)	532
BslFI	GGGAC	2 cut(s)	250, 828
BslI	CCNNNNNNNGG	3 cut(s)	466, 538, 998
BsmAI	GTCTC	2 cut(s)	175, 709
BsmFI	GGGAC	2 cut(s)	250, 828
BsnI	GGCC	3 cut(s)	341, 484, 939
Bso31I	GGTCTC	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	1032
Bsp143I	GATC	4 cut(s)	56, 534, 603, 912
BspACI	CCGC	1 cut(s)	827
BspANI	GGCC	3 cut(s)	341, 484, 939
BspCNI	CTCAG	2 cut(s)	297, 499
BspLI	GGNNCC	3 cut(s)	485, 728, 816
BspMI	ACCTGC	1 cut(s)	795
BspOI	GCTAGC	1 cut(s)	47
BspPI	GGATC	2 cut(s)	64, 542
BspTNI	GGTCTC	1 cut(s)	175
BsrDI	GCAATG	2 cut(s)	33, 870
BsrI	ACTGG	2 cut(s)	39, 818
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	4 cut(s)	56, 534, 603, 912
BssT1I	CCWWGG	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	596
Bst4CI	ACNGT	1 cut(s)	947
BstC8I	GCNNGC	5 cut(s)	45, 225, 298, 792, 1032
BstDEI	CTNAG	2 cut(s)	305, 507
BstENI	CCTNNNNNAGG	1 cut(s)	464
BstF5I	GGATG	3 cut(s)	14, 360, 1063
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	4 cut(s)	59, 537, 606, 915
BstMAI	GTCTC	2 cut(s)	175, 709
BstMBI	GATC	4 cut(s)	56, 534, 603, 912
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 523
BstNI	CCWGG	1 cut(s)	596
BstNSI	RCATGY	2 cut(s)	128, 1089
BstSCI	CCNGG	1 cut(s)	594
BstSFI	CTRYAG	1 cut(s)	731
BstV1I	GCAGC	2 cut(s)	193, 918
BstXI	CCANNNNNNTGG	1 cut(s)	711
BsuRI	GGCC	3 cut(s)	341, 484, 939
BtsCI	GGATG	3 cut(s)	14, 360, 1063
BtsIMutI	CAGTG	1 cut(s)	504
BveI	ACCTGC	1 cut(s)	795
Cac8I	GCNNGC	5 cut(s)	45, 225, 298, 792, 1032
CfoI	GCGC	1 cut(s)	302
Cfr13I	GGNCC	4 cut(s)	37, 149, 483, 815
Csp6I	GTAC	5 cut(s)	32, 259, 378, 405, 1083
CviAII	CATG	6 cut(s)	125, 136, 518, 573, 582, 1086
CviQI	GTAC	5 cut(s)	32, 259, 378, 405, 1083
DdeI	CTNAG	2 cut(s)	305, 507
DpnI	GATC	4 cut(s)	58, 536, 605, 914
DpnII	GATC	4 cut(s)	56, 534, 603, 912
DraIII	CACNNNGTG	1 cut(s)	998
EaeI	YGGCCR	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	88
Eco31I	GGTCTC	1 cut(s)	175
Eco47I	GGWCC	3 cut(s)	37, 149, 815
EcoNI	CCTNNNNNAGG	1 cut(s)	464
EcoO109I	RGGNCCY	1 cut(s)	483
EcoRII	CCWGG	1 cut(s)	594
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	6 cut(s)	128, 139, 521, 576, 585, 1089
FalI	AAGNNNNNCTT	4 cut(s)	960, 992, 996, 1028
FaqI	GGGAC	2 cut(s)	250, 828
FatI	CATG	6 cut(s)	124, 135, 517, 572, 581, 1085
FauNDI	CATATG	2 cut(s)	49, 647
FblI	GTMKAC	1 cut(s)	615
Fnu4HI	GCNGC	3 cut(s)	207, 828, 907
FokI	GGATG	3 cut(s)	21, 367, 1050
Fsp4HI	GCNGC	3 cut(s)	207, 828, 907
FspBI	CTAG	4 cut(s)	44, 146, 561, 1074
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	3 cut(s)	207, 828, 907
GsuI	CTGGAG	2 cut(s)	578, 777
HaeIII	GGCC	3 cut(s)	341, 484, 939
HapII	CCGG	1 cut(s)	532
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	6 cut(s)	128, 139, 521, 576, 585, 1089
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HinfI	GANTC	1 cut(s)	93
HpaII	CCGG	1 cut(s)	532
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	4 cut(s)	259, 407, 616, 1001
Hpy188I	TCNGA	3 cut(s)	354, 558, 917
Hpy188III	TCNNGA	3 cut(s)	167, 445, 756
Hpy8I	GTNNAC	4 cut(s)	259, 407, 616, 1001
HpyAV	CCTTC	2 cut(s)	195, 451
HpyCH4III	ACNGT	1 cut(s)	947
HpyCH4IV	ACGT	2 cut(s)	63, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 523
HpyF3I	CTNAG	2 cut(s)	305, 507
HpySE526I	ACGT	2 cut(s)	63, 329
Hsp92II	CATG	6 cut(s)	128, 139, 521, 576, 585, 1089
HspAI	GCGC	1 cut(s)	300
Kzo9I	GATC	4 cut(s)	56, 534, 603, 912
LmnI	GCTCC	2 cut(s)	628, 917
Lsp1109I	GCAGC	2 cut(s)	193, 918
LweI	GCATC	3 cut(s)	426, 668, 810
MaeI	CTAG	4 cut(s)	44, 146, 561, 1074
MaeII	ACGT	2 cut(s)	63, 329
MaeIII	GTNAC	5 cut(s)	14, 510, 630, 806, 1069
MalI	GATC	4 cut(s)	58, 536, 605, 914
MboI	GATC	4 cut(s)	56, 534, 603, 912
MboII	GAAGA	1 cut(s)	663
MhlI	GDGCHC	1 cut(s)	1032
MluCI	AATT	5 cut(s)	195, 362, 552, 588, 1035
MlyI	GAGTC	1 cut(s)	87
MnlI	CCTC	5 cut(s)	77, 165, 446, 474, 957
MseI	TTAA	4 cut(s)	372, 501, 740, 1014
MslI	CAYNNNNRTG	2 cut(s)	252, 857
MspI	CCGG	1 cut(s)	532
MspR9I	CCNGG	1 cut(s)	596
MvaI	CCWGG	1 cut(s)	596
MwoI	GCNNNNNNNGC	2 cut(s)	272, 523
NdeI	CATATG	2 cut(s)	49, 647
NdeII	GATC	4 cut(s)	56, 534, 603, 912
NheI	GCTAGC	1 cut(s)	43
NlaIII	CATG	6 cut(s)	128, 139, 521, 576, 585, 1089
NlaIV	GGNNCC	3 cut(s)	485, 728, 816
NmeAIII	GCCGAG	1 cut(s)	851
NmuCI	GTSAC	1 cut(s)	630
NspI	RCATGY	2 cut(s)	128, 1089
PciI	ACATGT	1 cut(s)	1085
PflMI	CCANNNNNTGG	1 cut(s)	998
PkrI	GCNGC	3 cut(s)	208, 829, 908
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
PscI	ACATGT	1 cut(s)	1085
Psp6I	CCWGG	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	594
PspN4I	GGNNCC	3 cut(s)	485, 728, 816
PspPI	GGNCC	4 cut(s)	37, 149, 483, 815
RsaI	GTAC	5 cut(s)	33, 260, 379, 406, 1084
RsaNI	GTAC	5 cut(s)	32, 259, 378, 405, 1083
RseI	CAYNNNNRTG	2 cut(s)	252, 857
SaqAI	TTAA	4 cut(s)	372, 501, 740, 1014
SatI	GCNGC	3 cut(s)	207, 828, 907
Sau3AI	GATC	4 cut(s)	56, 534, 603, 912
Sau96I	GGNCC	4 cut(s)	37, 149, 483, 815
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	596
SduI	GDGCHC	1 cut(s)	1032
SfaNI	GCATC	3 cut(s)	426, 668, 810
SfcI	CTRYAG	1 cut(s)	731
SinI	GGWCC	3 cut(s)	37, 149, 815
SmiMI	CAYNNNNRTG	2 cut(s)	252, 857
SmlI	CTYRAG	2 cut(s)	167, 719
SmoI	CTYRAG	2 cut(s)	167, 719
SpeI	ACTAGT	1 cut(s)	560
Sse9I	AATT	5 cut(s)	195, 362, 552, 588, 1035
SsiI	CCGC	1 cut(s)	827
SspMI	CTAG	4 cut(s)	44, 146, 561, 1074
StyD4I	CCNGG	1 cut(s)	594
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	947
TaiI	ACGT	2 cut(s)	66, 332
TasI	AATT	5 cut(s)	195, 362, 552, 588, 1035
TatI	WGTACW	2 cut(s)	258, 1082
TauI	GCSGC	1 cut(s)	830
Tru1I	TTAA	4 cut(s)	372, 501, 740, 1014
Tru9I	TTAA	4 cut(s)	372, 501, 740, 1014
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	1 cut(s)	630
TseI	GCWGC	2 cut(s)	206, 906
Tsp45I	GTSAC	1 cut(s)	630
TspDTI	ATGAA	2 cut(s)	570, 1080
TspGWI	ACGGA	1 cut(s)	615
TspRI	CASTG	1 cut(s)	511
Van91I	CCANNNNNTGG	1 cut(s)	998
VpaK11BI	GGWCC	3 cut(s)	37, 149, 815
XagI	CCTNNNNNAGG	1 cut(s)	464
XceI	RCATGY	2 cut(s)	128, 1089
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	615
XspI	CTAG	4 cut(s)	44, 146, 561, 1074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.