Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003064

Physical Location & Seq

Genomic Coordinates Forward (+)

12916784 .. 12919060

Gene Structure 2277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G136500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGTACTGGTTCAGCTCATATATGGTGGATCAAACATCCTCATAAAATTCTCCCTTGCAGAAGGACTCAATCCGATTGTCTTCGTCGTTTACCGGCATGTTATGGCCATGGTTTTGGTAGGACCATTTGCATATGTACTTGAAAGGAAGCAAAGGCCTTCACTTTCATTTTCTGTAGCTGCAAAAATTTTTATGCTTGCATTATTTGGAACCACCATCCATCTGAATGTGTACTATGCTGGTTTAGCATACACTTCTCCAACAGTTGCATGTGCCTTGAGTAATGTTATTCCCAGCTTGACATTTCTAATGGCAGTTCTACTTGGGTTGGAGAAGTTGAAGATTAGAACTGCTAGAGGTCAAGCTAAGGTGGCTGGCACACTTTTCTGCATTGGTGGTTCTCTTGTTTTCACTTTCTGGAAAGGAGGATACCTATTTAGAGGTTTTGTAAAGAGGCCACTGATAAATATATCTGTTGCTGAGATGAGGCATGTTAAGGAAAACTGGATCAAGGGGGCTCTTCTTATTCTGACGAGTCACATTGCATGGAGTGCATGGCTAATCCTCCAGGCTGTGGTCTCCAAAGTCTACACTGCTCGATTATCGCTAACCACGATGATATGCTTTTTCGCGTCGTTGCAATCTTCTTTTCTTGCCCTGTTTTTCGCAAGAAATCCAATTTCATGGAGACTGGAGTGGAACCTGCAACTTCTAACCATCGTCTACTGCGGAGTTGTAATCTCAGCATTAGCCTACTACCTACAAACATGGTGCATCAGTTACAGGGGACCAGTTTTTGCAGCTATGTTTAGTCCACTTCAAGTCGTTATAGTGGCATTATTCTCGGCACTTGCTTTCGCAGAGCGACTTCACTTTGGCAGCTTGATCGGAACGTTTCTCATTATTGTGGGTCTCTACTGTGTGCTGTGGGGAAAGAGGAAAGACAATCTTGTTGCTGAACAGACAGAGAATGGAAAAGGGGTACTTGAAGACATTAAAGTGCTGGAGAATGATATTTCAGTCACAAATCCAGTCGCTAGAGAAAGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

351

Amino Acids

38.91

Weight (kDa)

9.73

Isoelectric Point (pI)

27.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003064)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10210 FvH4_5g10220
malus_domestica	MD06G1126900.v1.1 MD06G1127200.v1.1 MD14G1142400.v1.1
prunus_persica	Prupe.4G100300_v2.0.a1 Prupe.5G136500_v2.0.a1 Prupe.5G136500_v2.0.a1
pyrus_communis	pycom06g11660 pycom14g11780 pycom14g11810
rosa_chinensis	RchiOBHm_Chr7g0188001 RchiOBHm_Chr7g0188011
rosa_laevigata	RLG00000004733 RLG00000004734 RLG00000004735
rosa_multiflora	Rmu_co8503989.1_g000001 Rmu_sc0003624.1_g000020 Rmu_ssc0000422.1_g000012
rosa_roxburghii	Rroxscaffold_3G00266810 Rroxscaffold_3G00266820
rosa_rugosa	Rorug06G0486700 Rorug06G0486700 Rorug06G0486800 Rorug06G0486900
rosa_samantha	Rh7AG091600 Rh7AG091700 Rh7BG093100 Rh7BG093200 Rh7BG093300 Rh7CG092400 Rh7CG092500 Rh7CG092700 Rh7DG093800 Rh7DG093900
rosa_wichuraiana	Rw7G007900 Rw7G007910 Rw7G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	711
AccB7I	CCANNNNNTGG	1 cut(s)	574
AccI	GTMKAC	2 cut(s)	588, 723
AccII	CGCG	1 cut(s)	632
AciI	CCGC	1 cut(s)	729
AclI	AACGTT	1 cut(s)	893
AclWI	GGATC	2 cut(s)	37, 515
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	2 cut(s)	47, 186
AfaI	GTAC	4 cut(s)	6, 138, 233, 984
AfiI	CCNNNNNNNGG	1 cut(s)	574
AgsI	TTSAA	4 cut(s)	143, 340, 821, 989
AjnI	CCWGG	1 cut(s)	567
AluBI	AGCT	6 cut(s)	16, 179, 297, 365, 803, 882
AluI	AGCT	6 cut(s)	16, 179, 297, 365, 803, 882
Alw26I	GTCTC	3 cut(s)	583, 682, 917
AlwI	GGATC	2 cut(s)	37, 515
AoxI	GGCC	3 cut(s)	105, 155, 455
ApeKI	GCWGC	3 cut(s)	179, 800, 879
ApoI	RAATTY	2 cut(s)	47, 186
AspS9I	GGNCC	2 cut(s)	122, 788
AvaII	GGWCC	2 cut(s)	122, 788
BalI	TGGCCA	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	520
BbsI	GAAGAC	2 cut(s)	73, 996
BbvI	GCAGC	3 cut(s)	166, 812, 891
BccI	CCATC	3 cut(s)	224, 228, 725
BcgI	CGANNNNNNTGC	4 cut(s)	825, 859, 868, 902
BciT130I	CCWGG	1 cut(s)	569
BciVI	GTATCC	1 cut(s)	422
BcoDI	GTCTC	3 cut(s)	583, 682, 917
BfaI	CTAG	2 cut(s)	354, 1038
BfmI	CTRYAG	1 cut(s)	174
BfuAI	ACCTGC	1 cut(s)	711
BfuI	GTATCC	1 cut(s)	422
BisI	GCNGC	3 cut(s)	180, 801, 880
BlsI	GCNGC	3 cut(s)	181, 802, 881
Bme1390I	CCNGG	1 cut(s)	569
Bme18I	GGWCC	2 cut(s)	122, 788
BmgT120I	GGNCC	2 cut(s)	122, 788
BmiI	GGNNCC	3 cut(s)	211, 701, 789
BmrFI	CCNGG	1 cut(s)	569
BmsI	GCATC	1 cut(s)	783
BpiI	GAAGAC	2 cut(s)	73, 996
BpmI	CTGGAG	3 cut(s)	551, 713, 1025
Bpu10I	CCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	298
BsaI	GGTCTC	2 cut(s)	583, 917
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	574
Bse118I	RCCGGY	1 cut(s)	93
Bse1I	ACTGG	5 cut(s)	12, 509, 696, 791, 1031
Bse3DI	GCAATG	1 cut(s)	540
BseBI	CCWGG	1 cut(s)	569
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	2 cut(s)	36, 216
BseLI	CCNNNNNNNGG	1 cut(s)	574
BseMI	GCAATG	1 cut(s)	540
BseMII	CTCAG	2 cut(s)	471, 756
BseNI	ACTGG	5 cut(s)	12, 509, 696, 791, 1031
BseXI	GCAGC	3 cut(s)	166, 812, 891
BseYI	CCCAGC	1 cut(s)	293
Bsh1236I	CGCG	1 cut(s)	632
BshFI	GGCC	3 cut(s)	107, 157, 457
BsiSI	CCGG	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	801
BslI	CCNNNNNNNGG	1 cut(s)	574
BsmAI	GTCTC	3 cut(s)	583, 682, 917
BsmFI	GGGAC	1 cut(s)	801
BsnI	GGCC	3 cut(s)	107, 157, 457
Bso31I	GGTCTC	2 cut(s)	583, 917
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp143I	GATC	3 cut(s)	29, 507, 885
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	1 cut(s)	729
BspANI	GGCC	3 cut(s)	107, 157, 457
BspCNI	CTCAG	2 cut(s)	472, 755
BspFNI	CGCG	1 cut(s)	632
BspLI	GGNNCC	3 cut(s)	211, 701, 789
BspMI	ACCTGC	1 cut(s)	711
BspPI	GGATC	2 cut(s)	37, 515
BspQI	GCTCTTC	1 cut(s)	525
BspTNI	GGTCTC	2 cut(s)	583, 917
BsrDI	GCAATG	1 cut(s)	540
BsrFI	RCCGGY	1 cut(s)	93
BsrI	ACTGG	5 cut(s)	12, 509, 696, 791, 1031
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	3 cut(s)	29, 507, 885
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	569
Bst4CI	ACNGT	2 cut(s)	265, 920
Bst6I	CTCTTC	1 cut(s)	525
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstC8I	GCNNGC	2 cut(s)	198, 376
BstDEI	CTNAG	3 cut(s)	366, 480, 742
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	2 cut(s)	36, 216
BstFNI	CGCG	1 cut(s)	632
BstKTI	GATC	3 cut(s)	32, 510, 888
BstMAI	GTCTC	3 cut(s)	583, 682, 917
BstMBI	GATC	3 cut(s)	29, 507, 885
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 371, 551
BstNI	CCWGG	1 cut(s)	569
BstNSI	RCATGY	3 cut(s)	101, 273, 494
BstSCI	CCNGG	1 cut(s)	567
BstSFI	CTRYAG	1 cut(s)	174
BstUI	CGCG	1 cut(s)	632
BstV1I	GCAGC	3 cut(s)	166, 812, 891
BstV2I	GAAGAC	2 cut(s)	73, 996
BstXI	CCANNNNNNTGG	2 cut(s)	115, 684
BsuI	GTATCC	1 cut(s)	422
BsuRI	GGCC	3 cut(s)	107, 157, 457
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	36, 216
BtsI	GCAGTG	1 cut(s)	591
BtsIMutI	CAGTG	2 cut(s)	458, 591
BveI	ACCTGC	1 cut(s)	711
Cac8I	GCNNGC	2 cut(s)	198, 376
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	2 cut(s)	122, 788
CseI	GACGC	1 cut(s)	621
Csp6I	GTAC	4 cut(s)	5, 137, 232, 983
CviAII	CATG	9 cut(s)	98, 109, 270, 491, 546, 555, 684, 768, 1050
CviQI	GTAC	4 cut(s)	5, 137, 232, 983
DdeI	CTNAG	3 cut(s)	366, 480, 742
DpnI	GATC	3 cut(s)	31, 509, 887
DpnII	GATC	3 cut(s)	29, 507, 885
EaeI	YGGCCR	1 cut(s)	105
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	108
Eco147I	AGGCCT	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	520
Eco31I	GGTCTC	2 cut(s)	583, 917
Eco47I	GGWCC	2 cut(s)	122, 788
EcoRII	CCWGG	1 cut(s)	567
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	9 cut(s)	101, 112, 273, 494, 549, 558, 687, 771, 1053
FalI	AAGNNNNNCTT	4 cut(s)	933, 965, 969, 1001
FaqI	GGGAC	1 cut(s)	801
FatI	CATG	9 cut(s)	97, 108, 269, 490, 545, 554, 683, 767, 1049
FauNDI	CATATG	1 cut(s)	133
FblI	GTMKAC	2 cut(s)	588, 723
Fnu4HI	GCNGC	3 cut(s)	180, 801, 880
FokI	GGATG	2 cut(s)	23, 203
FriOI	GRGCYC	1 cut(s)	520
Fsp4HI	GCNGC	3 cut(s)	180, 801, 880
FspBI	CTAG	2 cut(s)	354, 1038
GluI	GCNGC	3 cut(s)	180, 801, 880
GsaI	CCCAGC	1 cut(s)	297
GsuI	CTGGAG	3 cut(s)	551, 713, 1025
HaeIII	GGCC	3 cut(s)	107, 157, 457
HapII	CCGG	1 cut(s)	94
HgaI	GACGC	1 cut(s)	621
Hin1II	CATG	9 cut(s)	101, 112, 273, 494, 549, 558, 687, 771, 1053
HinfI	GANTC	2 cut(s)	66, 535
HpaII	CCGG	1 cut(s)	94
Hpy166II	GTNNAC	5 cut(s)	91, 232, 589, 724, 815
Hpy188I	TCNGA	4 cut(s)	75, 225, 531, 890
Hpy188III	TCNNGA	1 cut(s)	418
Hpy8I	GTNNAC	5 cut(s)	91, 232, 589, 724, 815
Hpy99I	CGWCG	2 cut(s)	89, 637
HpyAV	CCTTC	2 cut(s)	56, 168
HpyCH4III	ACNGT	2 cut(s)	265, 920
HpyCH4IV	ACGT	1 cut(s)	893
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 371, 551
HpyF3I	CTNAG	3 cut(s)	366, 480, 742
HpySE526I	ACGT	1 cut(s)	893
Hsp92II	CATG	9 cut(s)	101, 112, 273, 494, 549, 558, 687, 771, 1053
Kzo9I	GATC	3 cut(s)	29, 507, 885
LguI	GCTCTTC	1 cut(s)	525
Lsp1109I	GCAGC	3 cut(s)	166, 812, 891
LweI	GCATC	1 cut(s)	783
MaeI	CTAG	2 cut(s)	354, 1038
MaeII	ACGT	1 cut(s)	893
MaeIII	GTNAC	3 cut(s)	536, 779, 1021
MalI	GATC	3 cut(s)	31, 509, 887
MboI	GATC	3 cut(s)	29, 507, 885
MboII	GAAGA	5 cut(s)	73, 352, 512, 636, 1001
MhlI	GDGCHC	1 cut(s)	520
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	3 cut(s)	47, 186, 678
MluNI	TGGCCA	1 cut(s)	107
MlyI	GAGTC	2 cut(s)	60, 544
MmeI	TCCRAC	2 cut(s)	284, 309
MnlI	CCTC	8 cut(s)	50, 350, 419, 434, 447, 480, 575, 930
Mox20I	TGGCCA	1 cut(s)	107
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	2 cut(s)	495, 996
MslI	CAYNNNNRTG	3 cut(s)	225, 905, 998
Msp20I	TGGCCA	1 cut(s)	107
MspI	CCGG	1 cut(s)	94
MspR9I	CCNGG	1 cut(s)	569
MvaI	CCWGG	1 cut(s)	569
MvnI	CGCG	1 cut(s)	632
MwoI	GCNNNNNNNGC	3 cut(s)	245, 371, 551
NcoI	CCATGG	1 cut(s)	108
NdeI	CATATG	1 cut(s)	133
NdeII	GATC	3 cut(s)	29, 507, 885
NlaIII	CATG	9 cut(s)	101, 112, 273, 494, 549, 558, 687, 771, 1053
NlaIV	GGNNCC	3 cut(s)	211, 701, 789
NmeAIII	GCCGAG	1 cut(s)	824
NmuCI	GTSAC	2 cut(s)	536, 1021
NspI	RCATGY	3 cut(s)	101, 273, 494
PceI	AGGCCT	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	525
PcsI	WCGNNNNNNNCGW	1 cut(s)	611
PflMI	CCANNNNNTGG	1 cut(s)	574
PkrI	GCNGC	3 cut(s)	181, 802, 881
PleI	GAGTC	2 cut(s)	60, 543
PpsI	GAGTC	2 cut(s)	60, 543
Psp1406I	AACGTT	1 cut(s)	893
Psp6I	CCWGG	1 cut(s)	567
PspFI	CCCAGC	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	567
PspN4I	GGNNCC	3 cut(s)	211, 701, 789
PspPI	GGNCC	2 cut(s)	122, 788
RsaI	GTAC	4 cut(s)	6, 138, 233, 984
RsaNI	GTAC	4 cut(s)	5, 137, 232, 983
RseI	CAYNNNNRTG	3 cut(s)	225, 905, 998
SapI	GCTCTTC	1 cut(s)	525
SaqAI	TTAA	2 cut(s)	495, 996
SatI	GCNGC	3 cut(s)	180, 801, 880
Sau3AI	GATC	3 cut(s)	29, 507, 885
Sau96I	GGNCC	2 cut(s)	122, 788
SchI	GAGTC	2 cut(s)	60, 544
ScrFI	CCNGG	1 cut(s)	569
SduI	GDGCHC	1 cut(s)	520
SfaNI	GCATC	1 cut(s)	783
SfcI	CTRYAG	1 cut(s)	174
SinI	GGWCC	2 cut(s)	122, 788
SmiMI	CAYNNNNRTG	3 cut(s)	225, 905, 998
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	3 cut(s)	47, 186, 678
SseBI	AGGCCT	1 cut(s)	157
SsiI	CCGC	1 cut(s)	729
SspMI	CTAG	2 cut(s)	354, 1038
StuI	AGGCCT	1 cut(s)	157
StyD4I	CCNGG	1 cut(s)	567
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	2 cut(s)	265, 920
TaiI	ACGT	1 cut(s)	896
TaqI	TCGA	1 cut(s)	598
TasI	AATT	3 cut(s)	47, 186, 678
TatI	WGTACW	2 cut(s)	136, 231
Tru1I	TTAA	2 cut(s)	495, 996
Tru9I	TTAA	2 cut(s)	495, 996
TscAI	CASTG	2 cut(s)	465, 598
TseFI	GTSAC	2 cut(s)	536, 1021
TseI	GCWGC	3 cut(s)	179, 800, 879
Tsp45I	GTSAC	2 cut(s)	536, 1021
TspDTI	ATGAA	2 cut(s)	156, 672
TspRI	CASTG	2 cut(s)	465, 598
Van91I	CCANNNNNTGG	1 cut(s)	574
VpaK11BI	GGWCC	2 cut(s)	122, 788
XapI	RAATTY	2 cut(s)	47, 186
XceI	RCATGY	3 cut(s)	101, 273, 494
XmiI	GTMKAC	2 cut(s)	588, 723
XspI	CTAG	2 cut(s)	354, 1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.