Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0003064

Physical Location & Seq

Genomic Coordinates Reverse (-)

26918341 .. 26920421

Gene Structure 2081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1127200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGCACTCATTACTTGGCAATGGTACTGGTTCAGCTGATCTACGCCGGATCATACATCCTCATAAAATTATCCCTCCAGGATGGACTCAATCAGATTGTCTTCGTCGTTTACAGGCATGTTCTTGGCATGGTTTTGACCATTTGCTTATGTGCTTGAAAGTGGATGTGCTGAGCAGGAAGCAGAGGCCTTCACTCTCATTTTCGGTAGCTGCAAATATTTTCCTGCTCGCCTTGTTAGGGCCTACCATCTTTATGAATGTATACTGTGCTGGTTTAGCATACACTACTGCAACAGTTGGAACTGCCTTGGGTAATGTTGTCCCCGCTTTGACGTTTCTGATGGCAGTTCTTCTCAGGATGGAGAAATTGAAGATTAGAAGCGCTCGAGGCCAAGCGAAGGTGGCTGGTACAGTTTTCTGCATATGCGGTTCTCTTATTTTCACATTCTGGAAAGGAGGACACCTGTTGAAAGGTGTCGAAAAGCCACTGATAAATGTTTACGACGCCGAGAAGTATATTAGCAAGACCAAGCGTGTTCACGAAAACTGGATCAAGGGTTCTGCTCTTATTCTGATTAGCCACAGTGCGTGGAGTGCGTGGCTAATCCTCCAGGGTGTGGTGTCCAAAGTCTACCCTGCTCCACTGTCACTAACCACCATAATGTGCTTTTTCGCATCGCTGCAATCTTCTTTCCTTGCCCTGTTTTTGGCTAGAAACCCCAGTTCATGGAGACTGGAGTGGAACGTGCAGCTTTTGACCATCGTCTACTTCGGAGTTCTGAACACAGCATTAGTCTATTACCTGCAAGCATGGTGCATCAGTCACAAGGGACCAGTTTTTGCAGCTATGTTCACTCCACTTCCAGTCGTCCTAGTGGCAGTGTTTTCGGCAATTGCTTTTGCAGAGCGGCTTCACTTTGGCAGCTTGATTGGAGCACTTCTTATTATTGTGGGACTTTACTGTGTGCTGTGGGGAAAGAGGAAAGACGGTCTTGTTGGCGAACATACAGAGATTGAAAAGGTGACGGTCGACGATAATAAGGTGGTTGAGATTTACATGAGTGAAATTTCAGTAGTCAATCCTGTTACTAAAGCAGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

368

Amino Acids

40.54

Weight (kDa)

9.43

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	59 - 147	9.2e-07	EamA-like transporter family
EamA	PF00892	185 - 323	3.5e-14	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003064)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10210 FvH4_5g10220
malus_domestica	MD06G1126900.v1.1 MD06G1127200.v1.1 MD14G1142400.v1.1
prunus_persica	Prupe.4G100300_v2.0.a1 Prupe.5G136500_v2.0.a1 Prupe.5G136500_v2.0.a1
pyrus_communis	pycom06g11660 pycom14g11780 pycom14g11810
rosa_chinensis	RchiOBHm_Chr7g0188001 RchiOBHm_Chr7g0188011
rosa_laevigata	RLG00000004733 RLG00000004734 RLG00000004735
rosa_multiflora	Rmu_co8503989.1_g000001 Rmu_sc0003624.1_g000020 Rmu_ssc0000422.1_g000012
rosa_roxburghii	Rroxscaffold_3G00266810 Rroxscaffold_3G00266820
rosa_rugosa	Rorug06G0486700 Rorug06G0486700 Rorug06G0486800 Rorug06G0486900
rosa_samantha	Rh7AG091600 Rh7AG091700 Rh7BG093100 Rh7BG093200 Rh7BG093300 Rh7CG092400 Rh7CG092500 Rh7CG092700 Rh7DG093800 Rh7DG093900
rosa_wichuraiana	Rw7G007900 Rw7G007910 Rw7G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	810
AccB7I	CCANNNNNTGG	2 cut(s)	616, 726
AccBSI	CCGCTC	1 cut(s)	907
AccI	GTMKAC	4 cut(s)	261, 630, 765, 1029
AciI	CCGC	3 cut(s)	324, 426, 907
AclWI	GGATC	2 cut(s)	56, 557
AcsI	RAATTY	1 cut(s)	1065
AcyI	GRCGYC	1 cut(s)	504
AfaI	GTAC	2 cut(s)	25, 409
AfeI	AGCGCT	1 cut(s)	382
AfiI	CCNNNNNNNGG	5 cut(s)	237, 397, 616, 706, 726
AgsI	TTSAA	4 cut(s)	157, 370, 469, 1016
AjnI	CCWGG	2 cut(s)	76, 609
AloI	GAACNNNNNNTCC	2 cut(s)	541, 573
AluBI	AGCT	5 cut(s)	35, 209, 751, 845, 924
AluI	AGCT	5 cut(s)	35, 209, 751, 845, 924
Alw21I	GWGCWC	1 cut(s)	937
Alw26I	GTCTC	1 cut(s)	724
AlwI	GGATC	2 cut(s)	56, 557
Ama87I	CYCGRG	1 cut(s)	384
Aor51HI	AGCGCT	1 cut(s)	382
AoxI	GGCC	3 cut(s)	185, 239, 388
ApeKI	GCWGC	5 cut(s)	209, 679, 748, 842, 921
ApoI	RAATTY	1 cut(s)	1065
AspLEI	GCGC	1 cut(s)	383
AspS9I	GGNCC	2 cut(s)	239, 830
AsuHPI	GGTGA	1 cut(s)	1033
AvaI	CYCGRG	1 cut(s)	384
AvaII	GGWCC	1 cut(s)	830
BbsI	GAAGAC	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	937
BbvI	GCAGC	5 cut(s)	196, 666, 760, 854, 933
BccI	CCATC	5 cut(s)	75, 254, 334, 352, 767
BcgI	CGANNNNNNTGC	2 cut(s)	867, 901
BciT130I	CCWGG	2 cut(s)	78, 611
BcoDI	GTCTC	1 cut(s)	724
BfaI	CTAG	2 cut(s)	711, 872
BfoI	RGCGCY	1 cut(s)	384
BfuAI	ACCTGC	1 cut(s)	810
BisI	GCNGC	6 cut(s)	210, 680, 749, 843, 908, 922
BlpI	GCTNAGC	1 cut(s)	170
BlsI	GCNGC	6 cut(s)	211, 681, 750, 844, 909, 923
Bme1390I	CCNGG	2 cut(s)	78, 611
Bme18I	GGWCC	1 cut(s)	830
BmeT110I	CYCGRG	1 cut(s)	384
BmgT120I	GGNCC	2 cut(s)	239, 830
BmiI	GGNNCC	1 cut(s)	831
BmrFI	CCNGG	2 cut(s)	78, 611
BmrI	ACTGGG	1 cut(s)	714
BmsI	GCATC	2 cut(s)	683, 825
BmuI	ACTGGG	1 cut(s)	714
BoxI	GACNNNNGTC	1 cut(s)	761
BpiI	GAAGAC	1 cut(s)	92
BpmI	CTGGAG	3 cut(s)	60, 593, 755
Bpu1102I	GCTNAGC	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	504
BsaJI	CCNNGG	2 cut(s)	306, 610
Bsc4I	CCNNNNNNNGG	5 cut(s)	237, 397, 616, 706, 726
Bse1I	ACTGG	6 cut(s)	31, 551, 720, 738, 833, 863
Bse3DI	GCAATG	1 cut(s)	25
BseBI	CCWGG	2 cut(s)	78, 611
BseDI	CCNNGG	2 cut(s)	306, 610
BseGI	GGATG	4 cut(s)	55, 86, 169, 363
BseLI	CCNNNNNNNGG	5 cut(s)	237, 397, 616, 706, 726
BseMI	GCAATG	1 cut(s)	25
BseMII	CTCAG	2 cut(s)	161, 367
BseNI	ACTGG	6 cut(s)	31, 551, 720, 738, 833, 863
BseXI	GCAGC	5 cut(s)	196, 666, 760, 854, 933
BsgI	GTGCAG	1 cut(s)	767
Bsh1285I	CGRYCG	1 cut(s)	1029
BshFI	GGCC	3 cut(s)	187, 241, 390
BsiEI	CGRYCG	1 cut(s)	1029
BsiHKAI	GWGCWC	1 cut(s)	937
BsiHKCI	CYCGRG	1 cut(s)	384
BsiSI	CCGG	1 cut(s)	46
BslFI	GGGAC	3 cut(s)	305, 843, 966
BslI	CCNNNNNNNGG	5 cut(s)	237, 397, 616, 706, 726
BsmAI	GTCTC	1 cut(s)	724
BsmFI	GGGAC	3 cut(s)	305, 843, 966
BsnI	GGCC	3 cut(s)	187, 241, 390
BsoBI	CYCGRG	1 cut(s)	384
Bsp1286I	GDGCHC	1 cut(s)	937
Bsp143I	GATC	3 cut(s)	37, 48, 549
Bsp1720I	GCTNAGC	1 cut(s)	170
BspACI	CCGC	3 cut(s)	324, 426, 907
BspANI	GGCC	3 cut(s)	187, 241, 390
BspCNI	CTCAG	2 cut(s)	162, 366
BspLI	GGNNCC	1 cut(s)	831
BspMI	ACCTGC	1 cut(s)	810
BspPI	GGATC	2 cut(s)	56, 557
BsrBI	CCGCTC	1 cut(s)	907
BsrDI	GCAATG	1 cut(s)	25
BsrI	ACTGG	6 cut(s)	31, 551, 720, 738, 833, 863
BssECI	CCNNGG	2 cut(s)	306, 610
BssMI	GATC	3 cut(s)	37, 48, 549
BssNAI	GTATAC	1 cut(s)	262
BssNI	GRCGYC	1 cut(s)	504
BssT1I	CCWWGG	1 cut(s)	306
Bst1107I	GTATAC	1 cut(s)	262
Bst2UI	CCWGG	2 cut(s)	78, 611
Bst4CI	ACNGT	8 cut(s)	266, 295, 412, 584, 645, 962, 989, 1027
BstACI	GRCGYC	1 cut(s)	504
BstC8I	GCNNGC	2 cut(s)	228, 807
BstDEI	CTNAG	2 cut(s)	170, 353
BstF5I	GGATG	4 cut(s)	55, 86, 169, 363
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	1 cut(s)	383
BstKTI	GATC	3 cut(s)	40, 51, 552
BstMAI	GTCTC	1 cut(s)	724
BstMBI	GATC	3 cut(s)	37, 48, 549
BstMCI	CGRYCG	1 cut(s)	1029
BstMWI	GCNNNNNNNGC	4 cut(s)	275, 387, 401, 593
BstNI	CCWGG	2 cut(s)	78, 611
BstNSI	RCATGY	1 cut(s)	120
BstPAI	GACNNNNGTC	1 cut(s)	761
BstSCI	CCNGG	2 cut(s)	76, 609
BstV1I	GCAGC	5 cut(s)	196, 666, 760, 854, 933
BstV2I	GAAGAC	1 cut(s)	92
BstZ17I	GTATAC	1 cut(s)	262
BsuRI	GGCC	3 cut(s)	187, 241, 390
BtgZI	GCGATG	1 cut(s)	660
BtsCI	GGATG	4 cut(s)	55, 86, 169, 363
BtsI	GCAGTG	1 cut(s)	885
BtsIMutI	CAGTG	4 cut(s)	485, 589, 641, 885
BveI	ACCTGC	1 cut(s)	810
Cac8I	GCNNGC	2 cut(s)	228, 807
CfoI	GCGC	1 cut(s)	383
Cfr13I	GGNCC	2 cut(s)	239, 830
CseI	GACGC	1 cut(s)	512
Csp6I	GTAC	2 cut(s)	24, 408
CviAII	CATG	6 cut(s)	117, 128, 726, 810, 1057, 1101
CviQI	GTAC	2 cut(s)	24, 408
DdeI	CTNAG	2 cut(s)	170, 353
DpnI	GATC	3 cut(s)	39, 50, 551
DpnII	GATC	3 cut(s)	37, 48, 549
Eco130I	CCWWGG	1 cut(s)	306
Eco147I	AGGCCT	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	830
Eco47III	AGCGCT	1 cut(s)	382
Eco88I	CYCGRG	1 cut(s)	384
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRII	CCWGG	2 cut(s)	76, 609
EcoT14I	CCWWGG	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	6 cut(s)	120, 131, 729, 813, 1060, 1104
FalI	AAGNNNNNCTT	2 cut(s)	975, 1007
FaqI	GGGAC	3 cut(s)	305, 843, 966
FatI	CATG	6 cut(s)	116, 127, 725, 809, 1056, 1100
FauI	CCCGC	1 cut(s)	331
FauNDI	CATATG	1 cut(s)	422
FblI	GTMKAC	4 cut(s)	261, 630, 765, 1029
Fnu4HI	GCNGC	6 cut(s)	210, 680, 749, 843, 908, 922
FokI	GGATG	4 cut(s)	42, 93, 176, 370
Fsp4HI	GCNGC	6 cut(s)	210, 680, 749, 843, 908, 922
FspBI	CTAG	2 cut(s)	711, 872
GlaI	GCGC	1 cut(s)	382
GluI	GCNGC	6 cut(s)	210, 680, 749, 843, 908, 922
GsuI	CTGGAG	3 cut(s)	60, 593, 755
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	3 cut(s)	187, 241, 390
HapII	CCGG	1 cut(s)	46
HgaI	GACGC	1 cut(s)	512
HhaI	GCGC	1 cut(s)	383
Hin1I	GRCGYC	1 cut(s)	504
Hin1II	CATG	6 cut(s)	120, 131, 729, 813, 1060, 1104
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HincII	GTYRAC	1 cut(s)	1030
HindII	GTYRAC	1 cut(s)	1030
HinfI	GANTC	1 cut(s)	85
HpaII	CCGG	1 cut(s)	46
HphI	GGTGA	1 cut(s)	1033
Hpy166II	GTNNAC	8 cut(s)	110, 262, 499, 538, 631, 766, 852, 1030
Hpy188I	TCNGA	5 cut(s)	94, 339, 573, 773, 780
Hpy188III	TCNNGA	3 cut(s)	355, 448, 539
Hpy8I	GTNNAC	8 cut(s)	110, 262, 499, 538, 631, 766, 852, 1030
Hpy99I	CGWCG	3 cut(s)	108, 506, 1034
HpyAV	CCTTC	2 cut(s)	198, 391
HpyCH4III	ACNGT	8 cut(s)	266, 295, 412, 584, 645, 962, 989, 1027
HpyCH4IV	ACGT	2 cut(s)	332, 744
HpyF10VI	GCNNNNNNNGC	4 cut(s)	275, 387, 401, 593
HpyF3I	CTNAG	2 cut(s)	170, 353
HpySE526I	ACGT	2 cut(s)	332, 744
Hsp92I	GRCGYC	1 cut(s)	504
Hsp92II	CATG	6 cut(s)	120, 131, 729, 813, 1060, 1104
HspAI	GCGC	1 cut(s)	381
Kzo9I	GATC	3 cut(s)	37, 48, 549
LmnI	GCTCC	2 cut(s)	643, 932
Lsp1109I	GCAGC	5 cut(s)	196, 666, 760, 854, 933
LweI	GCATC	2 cut(s)	683, 825
MaeI	CTAG	2 cut(s)	711, 872
MaeII	ACGT	2 cut(s)	332, 744
MaeIII	GTNAC	4 cut(s)	645, 821, 1021, 1084
MalI	GATC	3 cut(s)	39, 50, 551
MbiI	CCGCTC	1 cut(s)	907
MboI	GATC	3 cut(s)	37, 48, 549
MboII	GAAGA	4 cut(s)	92, 341, 382, 678
MfeI	CAATTG	1 cut(s)	891
MhlI	GDGCHC	1 cut(s)	937
MluCI	AATT	4 cut(s)	66, 365, 891, 1065
MlyI	GAGTC	1 cut(s)	79
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	7 cut(s)	69, 84, 177, 380, 449, 617, 972
MslI	CAYNNNNRTG	2 cut(s)	251, 659
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	2 cut(s)	78, 611
MunI	CAATTG	1 cut(s)	891
MvaI	CCWGG	2 cut(s)	78, 611
MwoI	GCNNNNNNNGC	4 cut(s)	275, 387, 401, 593
NdeI	CATATG	1 cut(s)	422
NdeII	GATC	3 cut(s)	37, 48, 549
NlaIII	CATG	6 cut(s)	120, 131, 729, 813, 1060, 1104
NlaIV	GGNNCC	1 cut(s)	831
NmeAIII	GCCGAG	1 cut(s)	532
NmuCI	GTSAC	3 cut(s)	645, 821, 1021
NspI	RCATGY	1 cut(s)	120
PaeR7I	CTCGAG	1 cut(s)	384
PceI	AGGCCT	1 cut(s)	187
PflMI	CCANNNNNTGG	2 cut(s)	616, 726
PfoI	TCCNGGA	1 cut(s)	76
PkrI	GCNGC	6 cut(s)	211, 681, 750, 844, 909, 923
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PshAI	GACNNNNGTC	1 cut(s)	761
Psp6I	CCWGG	2 cut(s)	76, 609
PspGI	CCWGG	2 cut(s)	76, 609
PspN4I	GGNNCC	1 cut(s)	831
PspPI	GGNCC	2 cut(s)	239, 830
PspXI	VCTCGAGB	1 cut(s)	384
PvuII	CAGCTG	1 cut(s)	35
RsaI	GTAC	2 cut(s)	25, 409
RsaNI	GTAC	2 cut(s)	24, 408
RseI	CAYNNNNRTG	2 cut(s)	251, 659
SalI	GTCGAC	1 cut(s)	1028
SatI	GCNGC	6 cut(s)	210, 680, 749, 843, 908, 922
Sau3AI	GATC	3 cut(s)	37, 48, 549
Sau96I	GGNCC	2 cut(s)	239, 830
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	2 cut(s)	78, 611
SduI	GDGCHC	1 cut(s)	937
SfaNI	GCATC	2 cut(s)	683, 825
Sfr274I	CTCGAG	1 cut(s)	384
SinI	GGWCC	1 cut(s)	830
SlaI	CTCGAG	1 cut(s)	384
SmiMI	CAYNNNNRTG	2 cut(s)	251, 659
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
Sse9I	AATT	4 cut(s)	66, 365, 891, 1065
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	3 cut(s)	324, 426, 907
SspI	AATATT	1 cut(s)	217
SspMI	CTAG	2 cut(s)	711, 872
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	2 cut(s)	76, 609
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	8 cut(s)	266, 295, 412, 584, 645, 962, 989, 1027
TaiI	ACGT	2 cut(s)	335, 747
TaqI	TCGA	3 cut(s)	385, 477, 1029
TasI	AATT	4 cut(s)	66, 365, 891, 1065
TauI	GCSGC	1 cut(s)	910
TscAI	CASTG	4 cut(s)	492, 589, 648, 885
TseFI	GTSAC	3 cut(s)	645, 821, 1021
TseI	GCWGC	5 cut(s)	209, 679, 748, 842, 921
Tsp45I	GTSAC	3 cut(s)	645, 821, 1021
TspDTI	ATGAA	2 cut(s)	269, 714
TspRI	CASTG	4 cut(s)	492, 589, 648, 885
Van91I	CCANNNNNTGG	2 cut(s)	616, 726
VpaK11BI	GGWCC	1 cut(s)	830
XapI	RAATTY	1 cut(s)	1065
XceI	RCATGY	1 cut(s)	120
XhoI	CTCGAG	1 cut(s)	384
XmiI	GTMKAC	4 cut(s)	261, 630, 765, 1029
XspI	CTAG	2 cut(s)	711, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.