Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003064

Physical Location & Seq

Genomic Coordinates Reverse (-)

61813182 .. 61814974

Gene Structure 1793 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004734

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGAGGGCTGCAGTTACTACTTGGCAATGGTACTTTCTCAGCTATCCTATGGTGTATCAAGCATCCTCACAAAATTTTCTCTATCGGAAGGCCTGGATCCAATTGTCTTTGTGGTTTATAGGCATGTTATAGCCATGCTTTTATTAGCACCATTTGCTTATGTTATTGAGAGGAAGCAGAGACCTGCACTGTCAATTTCAATAGCTGCAAAAGTATTTTTGCTTGCATTATTTGGGACTACCATCCATCTCAATGTGTACTATGCCGGTTTAGCATACATCTCCCCCACAGTTGCTTGCGCCTTGGGTAATGTAGTCCCAAGTCTGACATTTGTAATGGCGGTTCTGCTTCGGATGGAGAAGTTGAAGATTAAAAATCGAAGAGGTCAAGCAAAGGTGGTTGGTACACTCCTCTGCATTGGTGGTTCTCTTATTTTCACATTCTGGAAAGGAGGGTACCTATTCAAGGGTTTTGTTGAGAAGCCACTTATCAAGGGATATAACACTGAGTTGAGGCATGGTAAGGAAAATTGGATCAAGGGTTCGGCTCTTATTCTCACTAGTCATATAGCATGGAGTTCATGGCTTATTCTCCAGGCTGTGGTCTCCAAGGTCTACCCTGCTCCATTGTCACTAACCGCCCTAATGTGCTTTTTCGCATCATTGCAATCTTCCCTTGTTGCCTTGTTTTTTGCAAAAGATCAATCTTCATGGAGACTTGATTGGGATCTGAAACTTTTTACCATCGTTTACAGTGGAGTTTTGATATCAGCATTAGTCTATTACCTGCAAACATGGTGCATCAGACATAAGGGACCAGTTTTTGCAGCTATGTTTAGTCCCCTACAAGTTATTATAGTCGCAATCTTCTCAGCAACTGCTTTCGCAGAGCGACTCCACTTAGGCAGCTTGATCGGAGCATTTCTCATCATCGTTGGCCTTTACTGTGTGCTATGGGGAAAGAACAAAGATGGTGTTATTGCTGAACTCCCACAGAATGGAAAAGGAGTACTTAATGGTGGTAATTCCATGAATGATCGATACAGTGATGAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

353

Amino Acids

38.82

Weight (kDa)

9.49

Isoelectric Point (pI)

31.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	7 - 146	1.1e-15	EamA-like transporter family
EamA	PF00892	180 - 318	3.4e-14	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003064)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10210 FvH4_5g10220
malus_domestica	MD06G1126900.v1.1 MD06G1127200.v1.1 MD14G1142400.v1.1
prunus_persica	Prupe.4G100300_v2.0.a1 Prupe.5G136500_v2.0.a1 Prupe.5G136500_v2.0.a1
pyrus_communis	pycom06g11660 pycom14g11780 pycom14g11810
rosa_chinensis	RchiOBHm_Chr7g0188001 RchiOBHm_Chr7g0188011
rosa_laevigata	RLG00000004733 RLG00000004734 RLG00000004735
rosa_multiflora	Rmu_co8503989.1_g000001 Rmu_sc0003624.1_g000020 Rmu_ssc0000422.1_g000012
rosa_roxburghii	Rroxscaffold_3G00266810 Rroxscaffold_3G00266820
rosa_rugosa	Rorug06G0486700 Rorug06G0486700 Rorug06G0486800 Rorug06G0486900
rosa_samantha	Rh7AG091600 Rh7AG091700 Rh7BG093100 Rh7BG093200 Rh7BG093300 Rh7CG092400 Rh7CG092500 Rh7CG092700 Rh7DG093800 Rh7DG093900
rosa_wichuraiana	Rw7G007900 Rw7G007910 Rw7G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	193, 795
Acc65I	GGTACC	1 cut(s)	456
AccB1I	GGYRCC	1 cut(s)	456
AccB7I	CCANNNNNTGG	2 cut(s)	601, 998
AccI	GTMKAC	1 cut(s)	615
AciI	CCGC	2 cut(s)	341, 639
AclWI	GGATC	4 cut(s)	92, 105, 542, 735
AcsI	RAATTY	1 cut(s)	74
AfaI	GTAC	5 cut(s)	33, 260, 406, 458, 1011
AfiI	CCNNNNNNNGG	3 cut(s)	466, 601, 998
AgsI	TTSAA	3 cut(s)	201, 367, 466
AhlI	ACTAGT	1 cut(s)	560
AjnI	CCWGG	2 cut(s)	93, 594
AloI	GAACNNNNNNTCC	2 cut(s)	526, 558
AluBI	AGCT	4 cut(s)	43, 206, 830, 909
AluI	AGCT	4 cut(s)	43, 206, 830, 909
Alw26I	GTCTC	3 cut(s)	175, 610, 709
AlwI	GGATC	4 cut(s)	92, 105, 542, 735
AlwNI	CAGNNNCTG	1 cut(s)	878
AoxI	GGCC	2 cut(s)	91, 937
ApeKI	GCWGC	4 cut(s)	9, 206, 827, 906
ApoI	RAATTY	1 cut(s)	74
Asp718I	GGTACC	1 cut(s)	456
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	815
AvaII	GGWCC	1 cut(s)	815
BamHI	GGATCC	1 cut(s)	97
BanI	GGYRCC	1 cut(s)	456
BbvI	GCAGC	3 cut(s)	193, 839, 918
BccI	CCATC	5 cut(s)	251, 255, 349, 752, 965
BcgI	CGANNNNNNTGC	2 cut(s)	895, 929
BciT130I	CCWGG	2 cut(s)	95, 596
BcoDI	GTCTC	3 cut(s)	175, 610, 709
BcuI	ACTAGT	1 cut(s)	560
BfaI	CTAG	1 cut(s)	561
BfmI	CTRYAG	1 cut(s)	10
BfuAI	ACCTGC	2 cut(s)	193, 795
BisI	GCNGC	4 cut(s)	10, 207, 828, 907
BlsI	GCNGC	4 cut(s)	11, 208, 829, 908
BmcAI	AGTACT	1 cut(s)	1011
Bme1390I	CCNGG	2 cut(s)	95, 596
Bme18I	GGWCC	1 cut(s)	815
BmgT120I	GGNCC	1 cut(s)	815
BmiI	GGNNCC	3 cut(s)	99, 458, 816
BmrFI	CCNGG	2 cut(s)	95, 596
BmsI	GCATC	3 cut(s)	72, 668, 810
BplI	GAGNNNNNCTC	2 cut(s)	909, 941
BpmI	CTGGAG	1 cut(s)	578
Bsa29I	ATCGAT	1 cut(s)	1039
BsaBI	GATNNNNATC	1 cut(s)	726
BsaI	GGTCTC	2 cut(s)	175, 610
BsaJI	CCNNGG	2 cut(s)	303, 609
Bsc4I	CCNNNNNNNGG	3 cut(s)	466, 601, 998
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	818
Bse3DI	GCAATG	2 cut(s)	33, 662
Bse8I	GATNNNNATC	1 cut(s)	726
BseBI	CCWGG	2 cut(s)	95, 596
BseCI	ATCGAT	1 cut(s)	1039
BseDI	CCNNGG	2 cut(s)	303, 609
BseGI	GGATG	3 cut(s)	63, 243, 360
BseJI	GATNNNNATC	1 cut(s)	726
BseLI	CCNNNNNNNGG	3 cut(s)	466, 601, 998
BseMI	GCAATG	2 cut(s)	33, 662
BseMII	CTCAG	3 cut(s)	53, 498, 885
BseNI	ACTGG	1 cut(s)	818
BseRI	GAGGAG	1 cut(s)	401
BseXI	GCAGC	3 cut(s)	193, 839, 918
BsgI	GTGCAG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	93, 939
BshNI	GGYRCC	1 cut(s)	456
BshVI	ATCGAT	1 cut(s)	1039
BsiSI	CCGG	1 cut(s)	267
BslFI	GGGAC	4 cut(s)	250, 302, 825, 828
BslI	CCNNNNNNNGG	3 cut(s)	466, 601, 998
BsmAI	GTCTC	3 cut(s)	175, 610, 709
BsmFI	GGGAC	4 cut(s)	250, 302, 825, 828
BsnI	GGCC	2 cut(s)	93, 939
Bso31I	GGTCTC	2 cut(s)	175, 610
Bsp143I	GATC	6 cut(s)	97, 534, 700, 727, 912, 1036
BspACI	CCGC	2 cut(s)	341, 639
BspANI	GGCC	2 cut(s)	93, 939
BspCNI	CTCAG	3 cut(s)	52, 499, 884
BspDI	ATCGAT	1 cut(s)	1039
BspLI	GGNNCC	3 cut(s)	99, 458, 816
BspMAI	CTGCAG	1 cut(s)	14
BspMI	ACCTGC	2 cut(s)	193, 795
BspPI	GGATC	4 cut(s)	92, 105, 542, 735
BspT107I	GGYRCC	1 cut(s)	456
BspTNI	GGTCTC	2 cut(s)	175, 610
BsrDI	GCAATG	2 cut(s)	33, 662
BsrFI	RCCGGY	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	818
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	2 cut(s)	303, 609
BssMI	GATC	6 cut(s)	97, 534, 700, 727, 912, 1036
BssT1I	CCWWGG	2 cut(s)	303, 609
Bst2UI	CCWGG	2 cut(s)	95, 596
Bst4CI	ACNGT	5 cut(s)	192, 292, 755, 947, 1046
Bst6I	CTCTTC	1 cut(s)	376
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	225, 298
BstDEI	CTNAG	4 cut(s)	39, 507, 871, 901
BstENI	CCTNNNNNAGG	1 cut(s)	464
BstF5I	GGATG	3 cut(s)	63, 243, 360
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	6 cut(s)	100, 537, 703, 730, 915, 1039
BstMAI	GTCTC	3 cut(s)	175, 610, 709
BstMBI	GATC	6 cut(s)	97, 534, 700, 727, 912, 1036
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 272
BstNI	CCWGG	2 cut(s)	95, 596
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	2 cut(s)	93, 594
BstSFI	CTRYAG	1 cut(s)	10
BstV1I	GCAGC	3 cut(s)	193, 839, 918
BstX2I	RGATCY	2 cut(s)	97, 727
BstYI	RGATCY	2 cut(s)	97, 727
Bsu15I	ATCGAT	1 cut(s)	1039
BsuRI	GGCC	2 cut(s)	93, 939
BsuTUI	ATCGAT	1 cut(s)	1039
BtsCI	GGATG	3 cut(s)	63, 243, 360
BtsIMutI	CAGTG	4 cut(s)	188, 504, 760, 1051
BveI	ACCTGC	2 cut(s)	193, 795
Cac8I	GCNNGC	2 cut(s)	225, 298
CaiI	CAGNNNCTG	1 cut(s)	878
CfoI	GCGC	1 cut(s)	302
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	815
ClaI	ATCGAT	1 cut(s)	1039
Csp6I	GTAC	5 cut(s)	32, 259, 405, 457, 1010
CviAII	CATG	8 cut(s)	125, 136, 518, 573, 582, 711, 795, 1030
CviQI	GTAC	5 cut(s)	32, 259, 405, 457, 1010
DdeI	CTNAG	4 cut(s)	39, 507, 871, 901
DpnI	GATC	6 cut(s)	99, 536, 702, 729, 914, 1038
DpnII	GATC	6 cut(s)	97, 534, 700, 727, 912, 1036
Eam1104I	CTCTTC	1 cut(s)	376
EarI	CTCTTC	1 cut(s)	376
Eco130I	CCWWGG	2 cut(s)	303, 609
Eco147I	AGGCCT	1 cut(s)	93
Eco31I	GGTCTC	2 cut(s)	175, 610
Eco32I	GATATC	1 cut(s)	768
Eco47I	GGWCC	1 cut(s)	815
EcoNI	CCTNNNNNAGG	1 cut(s)	464
EcoRII	CCWGG	2 cut(s)	93, 594
EcoRV	GATATC	1 cut(s)	768
EcoT14I	CCWWGG	2 cut(s)	303, 609
ErhI	CCWWGG	2 cut(s)	303, 609
FaeI	CATG	8 cut(s)	128, 139, 521, 576, 585, 714, 798, 1033
FalI	AAGNNNNNCTT	2 cut(s)	996, 1028
FaqI	GGGAC	4 cut(s)	250, 302, 825, 828
FatI	CATG	8 cut(s)	124, 135, 517, 572, 581, 710, 794, 1029
FblI	GTMKAC	1 cut(s)	615
Fnu4HI	GCNGC	4 cut(s)	10, 207, 828, 907
FokI	GGATG	3 cut(s)	50, 230, 367
Fsp4HI	GCNGC	4 cut(s)	10, 207, 828, 907
FspBI	CTAG	1 cut(s)	561
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	4 cut(s)	10, 207, 828, 907
GsuI	CTGGAG	1 cut(s)	578
HaeIII	GGCC	2 cut(s)	93, 939
HapII	CCGG	1 cut(s)	267
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	8 cut(s)	128, 139, 521, 576, 585, 714, 798, 1033
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HinfI	GANTC	1 cut(s)	894
HpaII	CCGG	1 cut(s)	267
Hpy166II	GTNNAC	4 cut(s)	259, 407, 616, 751
Hpy188I	TCNGA	6 cut(s)	88, 327, 354, 732, 806, 917
Hpy188III	TCNNGA	1 cut(s)	445
Hpy8I	GTNNAC	4 cut(s)	259, 407, 616, 751
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	5 cut(s)	192, 292, 755, 947, 1046
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 272
HpyF3I	CTNAG	4 cut(s)	39, 507, 871, 901
Hsp92II	CATG	8 cut(s)	128, 139, 521, 576, 585, 714, 798, 1033
HspAI	GCGC	1 cut(s)	300
KpnI	GGTACC	1 cut(s)	460
Kzo9I	GATC	6 cut(s)	97, 534, 700, 727, 912, 1036
LmnI	GCTCC	2 cut(s)	628, 917
Lsp1109I	GCAGC	3 cut(s)	193, 839, 918
LweI	GCATC	3 cut(s)	72, 668, 810
MaeI	CTAG	1 cut(s)	561
MaeIII	GTNAC	2 cut(s)	14, 630
MalI	GATC	6 cut(s)	99, 536, 702, 729, 914, 1038
MboI	GATC	6 cut(s)	97, 534, 700, 727, 912, 1036
MboII	GAAGA	5 cut(s)	379, 393, 663, 699, 859
MfeI	CAATTG	1 cut(s)	102
MflI	RGATCY	2 cut(s)	97, 727
MluCI	AATT	5 cut(s)	74, 102, 195, 529, 1024
MlyI	GAGTC	1 cut(s)	888
MnlI	CCTC	6 cut(s)	77, 165, 377, 422, 446, 507
MseI	TTAA	2 cut(s)	372, 1014
MslI	CAYNNNNRTG	1 cut(s)	252
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	2 cut(s)	95, 596
MunI	CAATTG	1 cut(s)	102
MvaI	CCWGG	2 cut(s)	95, 596
MwoI	GCNNNNNNNGC	2 cut(s)	155, 272
NdeII	GATC	6 cut(s)	97, 534, 700, 727, 912, 1036
NlaIII	CATG	8 cut(s)	128, 139, 521, 576, 585, 714, 798, 1033
NlaIV	GGNNCC	3 cut(s)	99, 458, 816
NmuCI	GTSAC	1 cut(s)	630
NspI	RCATGY	1 cut(s)	128
PceI	AGGCCT	1 cut(s)	93
PflMI	CCANNNNNTGG	2 cut(s)	601, 998
PkrI	GCNGC	4 cut(s)	11, 208, 829, 908
PleI	GAGTC	1 cut(s)	888
PpsI	GAGTC	1 cut(s)	888
Psp6I	CCWGG	2 cut(s)	93, 594
PspGI	CCWGG	2 cut(s)	93, 594
PspN4I	GGNNCC	3 cut(s)	99, 458, 816
PspPI	GGNCC	1 cut(s)	815
PsrI	GAACNNNNNNTAC	2 cut(s)	327, 359
PstI	CTGCAG	1 cut(s)	14
PstNI	CAGNNNCTG	1 cut(s)	878
PsuI	RGATCY	2 cut(s)	97, 727
RsaI	GTAC	5 cut(s)	33, 260, 406, 458, 1011
RsaNI	GTAC	5 cut(s)	32, 259, 405, 457, 1010
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	2 cut(s)	372, 1014
SatI	GCNGC	4 cut(s)	10, 207, 828, 907
Sau3AI	GATC	6 cut(s)	97, 534, 700, 727, 912, 1036
Sau96I	GGNCC	1 cut(s)	815
ScaI	AGTACT	1 cut(s)	1011
SchI	GAGTC	1 cut(s)	888
ScrFI	CCNGG	2 cut(s)	95, 596
SfaNI	GCATC	3 cut(s)	72, 668, 810
SfcI	CTRYAG	1 cut(s)	10
SinI	GGWCC	1 cut(s)	815
SmiMI	CAYNNNNRTG	1 cut(s)	252
SpeI	ACTAGT	1 cut(s)	560
Sse9I	AATT	5 cut(s)	74, 102, 195, 529, 1024
SseBI	AGGCCT	1 cut(s)	93
SsiI	CCGC	2 cut(s)	341, 639
SspMI	CTAG	1 cut(s)	561
StuI	AGGCCT	1 cut(s)	93
StyD4I	CCNGG	2 cut(s)	93, 594
StyI	CCWWGG	2 cut(s)	303, 609
TaaI	ACNGT	5 cut(s)	192, 292, 755, 947, 1046
TaqI	TCGA	2 cut(s)	379, 1039
TasI	AATT	5 cut(s)	74, 102, 195, 529, 1024
TatI	WGTACW	2 cut(s)	258, 1009
Tru1I	TTAA	2 cut(s)	372, 1014
Tru9I	TTAA	2 cut(s)	372, 1014
TscAI	CASTG	4 cut(s)	195, 511, 760, 1051
TseFI	GTSAC	1 cut(s)	630
TseI	GCWGC	4 cut(s)	9, 206, 827, 906
Tsp45I	GTSAC	1 cut(s)	630
TspDTI	ATGAA	3 cut(s)	570, 699, 1046
TspRI	CASTG	4 cut(s)	195, 511, 760, 1051
Van91I	CCANNNNNTGG	2 cut(s)	601, 998
VpaK11BI	GGWCC	1 cut(s)	815
XagI	CCTNNNNNAGG	1 cut(s)	464
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	1 cut(s)	128
XmiI	GTMKAC	1 cut(s)	615
XspI	CTAG	1 cut(s)	561
ZrmI	AGTACT	1 cut(s)	1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.