Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003064

Physical Location & Seq

Genomic Coordinates Forward (+)

60563137 .. 60564347

Gene Structure 1211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0486700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAACATATCACAATCACAATACAATAGTGGGTGTGAATCTGGGTGGACACATTACCTAGATCAGTCGTATCTTTCTGGAAGCCATGGGATTCAAAAAGGTGATGATTATGTAGGAACAAAACCAGAATTTGAAGAGGAAGAAGAGGAGGAGGATCTATCCATGGTGTCTGATGCTTCTTCTGGACCTCCACATTACCAAGAATTATATGAAGATGGGTGTTCGTTTTCGGTTAATTCTTCGGCTTCCAAATTAGGCAAGAAAAGCAAGAAAAAGAAGAGCAAAGAACAACACCACCATCTTGATGACACTGCTAGCTCCTCAGTCTTCAACTACTACTCCAAGAAAAAGATGAGTACTCTTTCCAAGAATGAACCTTCAATGCAGAATGTACTGGATTACTCTGAGGGTTTCTCAACAACACATATGAAGCACTTTGGTTACTTGAACTCATCTCTAGCTCCACAAAACCTGGTGATTTTCAAGGAGGAAGCTGGGAGTAATGATTATGATGGGAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

174

Amino Acids

19.5

Weight (kDa)

5.04

Isoelectric Point (pI)

54.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003064)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10210 FvH4_5g10220
malus_domestica	MD06G1126900.v1.1 MD06G1127200.v1.1 MD14G1142400.v1.1
prunus_persica	Prupe.4G100300_v2.0.a1 Prupe.5G136500_v2.0.a1 Prupe.5G136500_v2.0.a1
pyrus_communis	pycom06g11660 pycom14g11780 pycom14g11810
rosa_chinensis	RchiOBHm_Chr7g0188001 RchiOBHm_Chr7g0188011
rosa_laevigata	RLG00000004733 RLG00000004734 RLG00000004735
rosa_multiflora	Rmu_co8503989.1_g000001 Rmu_sc0003624.1_g000020 Rmu_ssc0000422.1_g000012
rosa_roxburghii	Rroxscaffold_3G00266810 Rroxscaffold_3G00266820
rosa_rugosa	Rorug06G0486700 Rorug06G0486700 Rorug06G0486800 Rorug06G0486900
rosa_samantha	Rh7AG091600 Rh7AG091700 Rh7BG093100 Rh7BG093200 Rh7BG093300 Rh7CG092400 Rh7CG092500 Rh7CG092700 Rh7DG093800 Rh7DG093900
rosa_wichuraiana	Rw7G007900 Rw7G007910 Rw7G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	128
AfaI	GTAC	2 cut(s)	358, 393
AgsI	TTSAA	6 cut(s)	95, 134, 331, 381, 448, 484
AjnI	CCWGG	1 cut(s)	471
AluBI	AGCT	3 cut(s)	318, 461, 494
AluI	AGCT	3 cut(s)	318, 461, 494
AlwI	GGATC	1 cut(s)	162
ApoI	RAATTY	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	113, 487
AsuNHI	GCTAGC	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	319
BccI	CCATC	3 cut(s)	209, 306, 506
BciT130I	CCWGG	1 cut(s)	473
BfaI	CTAG	3 cut(s)	59, 315, 458
BmcAI	AGTACT	1 cut(s)	358
Bme1390I	CCNGG	1 cut(s)	473
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	473
BmsI	GCATC	1 cut(s)	163
BmtI	GCTAGC	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	319
BplI	GAGNNNNNCTC	2 cut(s)	398, 430
BsaJI	CCNNGG	2 cut(s)	85, 162
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bse1I	ACTGG	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	473
BseDI	CCNNGG	2 cut(s)	85, 162
BseMII	CTCAG	2 cut(s)	336, 396
BseNI	ACTGG	1 cut(s)	399
BseRI	GAGGAG	3 cut(s)	161, 164, 310
BseYI	CCCAGC	1 cut(s)	494
Bsp143I	GATC	2 cut(s)	61, 154
Bsp19I	CCATGG	2 cut(s)	85, 162
BspCNI	CTCAG	2 cut(s)	335, 397
BspOI	GCTAGC	1 cut(s)	318
BspPI	GGATC	1 cut(s)	162
BspQI	GCTCTTC	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	399
BssECI	CCNNGG	2 cut(s)	85, 162
BssMI	GATC	2 cut(s)	61, 154
BssT1I	CCWWGG	2 cut(s)	85, 162
Bst2UI	CCWGG	1 cut(s)	473
Bst6I	CTCTTC	3 cut(s)	129, 138, 272
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	2 cut(s)	322, 405
BstDSI	CCRYGG	2 cut(s)	85, 162
BstKTI	GATC	2 cut(s)	64, 157
BstMBI	GATC	2 cut(s)	61, 154
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstNI	CCWGG	1 cut(s)	473
BstSCI	CCNGG	1 cut(s)	471
BstV2I	GAAGAC	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BtgI	CCRYGG	2 cut(s)	85, 162
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	316
Cfr13I	GGNCC	1 cut(s)	185
CsiI	ACCWGGT	1 cut(s)	471
Csp6I	GTAC	2 cut(s)	357, 392
CviAII	CATG	2 cut(s)	86, 163
CviJI	RGCY	5 cut(s)	84, 245, 318, 461, 494
CviKI_1	RGCY	5 cut(s)	84, 245, 318, 461, 494
CviQI	GTAC	2 cut(s)	357, 392
DdeI	CTNAG	2 cut(s)	322, 405
DpnI	GATC	2 cut(s)	63, 156
DpnII	GATC	2 cut(s)	61, 154
Eam1104I	CTCTTC	3 cut(s)	129, 138, 272
EarI	CTCTTC	3 cut(s)	129, 138, 272
Eco130I	CCWWGG	2 cut(s)	85, 162
Eco47I	GGWCC	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	471
EcoT14I	CCWWGG	2 cut(s)	85, 162
ErhI	CCWWGG	2 cut(s)	85, 162
FaeI	CATG	2 cut(s)	89, 166
FaiI	YATR	9 cut(s)	8, 87, 111, 164, 208, 210, 426, 428, 510
FatI	CATG	2 cut(s)	85, 162
FauNDI	CATATG	1 cut(s)	426
FspBI	CTAG	3 cut(s)	59, 315, 458
GsaI	CCCAGC	1 cut(s)	498
Hin1II	CATG	2 cut(s)	89, 166
HinfI	GANTC	2 cut(s)	38, 91
HphI	GGTGA	2 cut(s)	113, 487
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	2 cut(s)	172, 406
Hpy188III	TCNNGA	3 cut(s)	78, 183, 302
Hpy8I	GTNNAC	1 cut(s)	48
HpyAV	CCTTC	1 cut(s)	387
HpyCH4V	TGCA	1 cut(s)	385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	2 cut(s)	322, 405
Hsp92II	CATG	2 cut(s)	89, 166
Kzo9I	GATC	2 cut(s)	61, 154
LguI	GCTCTTC	1 cut(s)	272
LmnI	GCTCC	2 cut(s)	323, 466
LpnPI	CCDG	8 cut(s)	27, 63, 138, 168, 380, 458, 480, 485
LweI	GCATC	1 cut(s)	163
MabI	ACCWGGT	1 cut(s)	471
MaeI	CTAG	3 cut(s)	59, 315, 458
MaeIII	GTNAC	1 cut(s)	440
MalI	GATC	2 cut(s)	63, 156
MboI	GATC	2 cut(s)	61, 154
MboII	GAAGA	8 cut(s)	146, 152, 155, 171, 224, 231, 289, 319
MflI	RGATCY	1 cut(s)	154
MluCI	AATT	4 cut(s)	128, 203, 235, 251
MnlI	CCTC	8 cut(s)	130, 139, 142, 145, 198, 331, 400, 481
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	473
MvaI	CCWGG	1 cut(s)	473
MwoI	GCNNNNNNNGC	1 cut(s)	264
NcoI	CCATGG	2 cut(s)	85, 162
NdeI	CATATG	1 cut(s)	426
NdeII	GATC	2 cut(s)	61, 154
NheI	GCTAGC	1 cut(s)	314
NlaIII	CATG	2 cut(s)	89, 166
PciSI	GCTCTTC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	38, 91
Psp6I	CCWGG	1 cut(s)	471
PspFI	CCCAGC	1 cut(s)	494
PspGI	CCWGG	1 cut(s)	471
PspPI	GGNCC	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	154
RsaI	GTAC	2 cut(s)	358, 393
RsaNI	GTAC	2 cut(s)	357, 392
RseI	CAYNNNNRTG	1 cut(s)	303
SapI	GCTCTTC	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	234
Sau3AI	GATC	2 cut(s)	61, 154
Sau96I	GGNCC	1 cut(s)	185
ScaI	AGTACT	1 cut(s)	358
ScrFI	CCNGG	1 cut(s)	473
SetI	ASST	8 cut(s)	60, 103, 190, 320, 379, 463, 474, 496
SexAI	ACCWGGT	1 cut(s)	471
SfaNI	GCATC	1 cut(s)	163
SinI	GGWCC	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	303
Sse9I	AATT	4 cut(s)	128, 203, 235, 251
SspMI	CTAG	3 cut(s)	59, 315, 458
StyD4I	CCNGG	1 cut(s)	471
StyI	CCWWGG	2 cut(s)	85, 162
TasI	AATT	4 cut(s)	128, 203, 235, 251
TatI	WGTACW	2 cut(s)	356, 391
TfiI	GAWTC	2 cut(s)	38, 91
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	1 cut(s)	316
TspDTI	ATGAA	4 cut(s)	17, 225, 387, 443
TspRI	CASTG	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	1 cut(s)	128
XspI	CTAG	3 cut(s)	59, 315, 458
ZrmI	AGTACT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.