Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003064

Physical Location & Seq

Genomic Coordinates Reverse (-)

14884166 .. 14884988

Gene Structure 823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g11810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGAAGGAAGCACTAATTGTTACTTGGCAATGATACTGGTTCAGCTGATATACGGCGGATCAAACGTCCTCATGAAACTATCCCTTCAGGAAGGACTCAATCAGATTGTCTTCGTGGTTTACAGGCATGTTCTTGCCATGGTTTTGGTAGGACCATTTGCTTATATGCTTGAAAGGAAGCAGAGGCCTTCGCTCTCATTTTCGATAGCTGCAAAGATTTTTGCTCTTGCATCACTCGGGACTACCATCCATCTTAATATGTTCTATGCTGGTTTAGCATACACTTCTGCAACAGTTGGATGTGCCTTGAGTAATGTTATCCCTGCTTTCACGTTTCTAGTGGCAGTTCTTCTCAGGATGGAGAAACTGAACATTAGAAGCACTCGAGGTCAAGCTAAGGTGGTCGGAACCCTTCTTTGCCTTGGCGGTTCTCTTATTTTCACCTTCTGGAAAGGAGGATACCTATATAAAGGTTTTCTTGAGAAGCCACTGATAGATGGTTTCAACGCTGAGTCTGTTGGCAAGATTCAGCATGTCAAAGAAAACTGGATCAAGGGTTCTGTGCTGATTCTGACGAGTTACACTGCATGGAGTGCATGGCTAATCCTCCAGGTGATTGTATACTCCATTCAAGATGGTGCTCTCCAAACAAATATAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

221

Amino Acids

24.23

Weight (kDa)

9.47

Isoelectric Point (pI)

27.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003064)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10210 FvH4_5g10220
malus_domestica	MD06G1126900.v1.1 MD06G1127200.v1.1 MD14G1142400.v1.1
prunus_persica	Prupe.4G100300_v2.0.a1 Prupe.5G136500_v2.0.a1 Prupe.5G136500_v2.0.a1
pyrus_communis	pycom06g11660 pycom14g11780 pycom14g11810
rosa_chinensis	RchiOBHm_Chr7g0188001 RchiOBHm_Chr7g0188011
rosa_laevigata	RLG00000004733 RLG00000004734 RLG00000004735
rosa_multiflora	Rmu_co8503989.1_g000001 Rmu_sc0003624.1_g000020 Rmu_ssc0000422.1_g000012
rosa_roxburghii	Rroxscaffold_3G00266810 Rroxscaffold_3G00266820
rosa_rugosa	Rorug06G0486700 Rorug06G0486700 Rorug06G0486800 Rorug06G0486900
rosa_samantha	Rh7AG091600 Rh7AG091700 Rh7BG093100 Rh7BG093200 Rh7BG093300 Rh7CG092400 Rh7CG092500 Rh7CG092700 Rh7DG093800 Rh7DG093900
rosa_wichuraiana	Rw7G007900 Rw7G007910 Rw7G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	621
AciI	CCGC	2 cut(s)	57, 426
AclWI	GGATC	2 cut(s)	67, 557
AcuI	CTGAAG	1 cut(s)	71
AgsI	TTSAA	3 cut(s)	173, 505, 632
AjnI	CCWGG	1 cut(s)	609
AloI	GAACNNNNNNTCC	2 cut(s)	541, 573
AluBI	AGCT	3 cut(s)	46, 209, 395
AluI	AGCT	3 cut(s)	46, 209, 395
Alw21I	GWGCWC	1 cut(s)	643
AlwI	GGATC	2 cut(s)	67, 557
Ama87I	CYCGRG	2 cut(s)	236, 384
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	2 cut(s)	433, 625
AvaI	CYCGRG	2 cut(s)	236, 384
AvaII	GGWCC	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	643
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	5 cut(s)	254, 258, 352, 491, 629
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	611
BciVI	GTATCC	1 cut(s)	452
BfaI	CTAG	1 cut(s)	338
BfuI	GTATCC	1 cut(s)	452
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
Bme1390I	CCNGG	1 cut(s)	611
Bme18I	GGWCC	1 cut(s)	152
BmeT110I	CYCGRG	2 cut(s)	236, 384
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	409
BmrFI	CCNGG	1 cut(s)	611
BmsI	GCATC	1 cut(s)	239
BpiI	GAAGAC	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	593
Bpu10I	CCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	2 cut(s)	328, 500
BsaJI	CCNNGG	2 cut(s)	138, 421
Bse1I	ACTGG	2 cut(s)	42, 551
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	611
BseDI	CCNNGG	2 cut(s)	138, 421
BseGI	GGATG	3 cut(s)	246, 305, 363
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	2 cut(s)	367, 501
BseNI	ACTGG	2 cut(s)	42, 551
BseXI	GCAGC	1 cut(s)	196
BshFI	GGCC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	643
BsiHKCI	CYCGRG	2 cut(s)	236, 384
BslFI	GGGAC	1 cut(s)	253
BsmFI	GGGAC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	187
BsoBI	CYCGRG	2 cut(s)	236, 384
Bsp1286I	GDGCHC	1 cut(s)	643
Bsp143I	GATC	2 cut(s)	59, 549
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	2 cut(s)	57, 426
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	2 cut(s)	366, 502
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	409
BspPI	GGATC	2 cut(s)	67, 557
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	2 cut(s)	42, 551
BssECI	CCNNGG	2 cut(s)	138, 421
BssMI	GATC	2 cut(s)	59, 549
BssNAI	GTATAC	1 cut(s)	622
BssT1I	CCWWGG	2 cut(s)	138, 421
Bst1107I	GTATAC	1 cut(s)	622
Bst2UI	CCWGG	1 cut(s)	611
Bst4CI	ACNGT	1 cut(s)	295
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstDEI	CTNAG	3 cut(s)	353, 396, 510
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	3 cut(s)	246, 305, 363
BstKTI	GATC	2 cut(s)	62, 552
BstMBI	GATC	2 cut(s)	59, 549
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 593
BstNI	CCWGG	1 cut(s)	611
BstNSI	RCATGY	2 cut(s)	131, 536
BstSCI	CCNGG	1 cut(s)	609
BstV1I	GCAGC	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	103
BstXI	CCANNNNNNTGG	1 cut(s)	145
BstZ17I	GTATAC	1 cut(s)	622
BsuI	GTATCC	1 cut(s)	452
BsuRI	GGCC	1 cut(s)	187
BtgI	CCRYGG	1 cut(s)	138
BtsCI	GGATG	3 cut(s)	246, 305, 363
BtsI	GCAGTG	1 cut(s)	582
BtsIMutI	CAGTG	2 cut(s)	488, 582
CciI	TCATGA	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	152
CviAII	CATG	6 cut(s)	73, 128, 139, 533, 588, 597
CviJI	RGCY	6 cut(s)	46, 187, 209, 395, 487, 601
CviKI_1	RGCY	6 cut(s)	46, 187, 209, 395, 487, 601
DdeI	CTNAG	3 cut(s)	353, 396, 510
DpnI	GATC	2 cut(s)	61, 551
DpnII	GATC	2 cut(s)	59, 549
EciI	GGCGGA	1 cut(s)	72
Eco130I	CCWWGG	2 cut(s)	138, 421
Eco147I	AGGCCT	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	71
Eco88I	CYCGRG	2 cut(s)	236, 384
EcoRII	CCWGG	1 cut(s)	609
EcoT14I	CCWWGG	2 cut(s)	138, 421
ErhI	CCWWGG	2 cut(s)	138, 421
FaeI	CATG	6 cut(s)	76, 131, 142, 536, 591, 600
FalI	AAGNNNNNCTT	2 cut(s)	462, 494
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	6 cut(s)	72, 127, 138, 532, 587, 596
FblI	GTMKAC	1 cut(s)	621
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	3 cut(s)	233, 312, 370
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	1 cut(s)	210
GsuI	CTGGAG	1 cut(s)	593
HaeIII	GGCC	1 cut(s)	187
Hin1II	CATG	6 cut(s)	76, 131, 142, 536, 591, 600
HinfI	GANTC	4 cut(s)	96, 512, 526, 568
HphI	GGTGA	2 cut(s)	433, 625
Hpy166II	GTNNAC	2 cut(s)	121, 622
Hpy188I	TCNGA	3 cut(s)	105, 407, 573
Hpy188III	TCNNGA	7 cut(s)	73, 89, 238, 355, 448, 479, 632
Hpy8I	GTNNAC	2 cut(s)	121, 622
HpyAV	CCTTC	5 cut(s)	86, 95, 198, 422, 454
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	2 cut(s)	66, 332
HpyCH4V	TGCA	5 cut(s)	212, 230, 290, 587, 596
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 593
HpyF3I	CTNAG	3 cut(s)	353, 396, 510
HpySE526I	ACGT	2 cut(s)	66, 332
Hsp92II	CATG	6 cut(s)	76, 131, 142, 536, 591, 600
Kzo9I	GATC	2 cut(s)	59, 549
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	1 cut(s)	239
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	2 cut(s)	66, 332
MaeIII	GTNAC	2 cut(s)	20, 578
MalI	GATC	2 cut(s)	61, 551
MboI	GATC	2 cut(s)	59, 549
MboII	GAAGA	2 cut(s)	103, 341
MhlI	GDGCHC	1 cut(s)	643
MluCI	AATT	1 cut(s)	16
MlyI	GAGTC	2 cut(s)	90, 521
MmeI	TCCRAC	2 cut(s)	277, 385
MnlI	CCTC	5 cut(s)	80, 177, 380, 449, 617
MseI	TTAA	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	611
MvaI	CCWGG	1 cut(s)	611
MwoI	GCNNNNNNNGC	2 cut(s)	275, 593
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	2 cut(s)	59, 549
NlaIII	CATG	6 cut(s)	76, 131, 142, 536, 591, 600
NlaIV	GGNNCC	1 cut(s)	409
NspI	RCATGY	2 cut(s)	131, 536
PaeR7I	CTCGAG	1 cut(s)	384
PagI	TCATGA	1 cut(s)	72
PceI	AGGCCT	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	526, 568
PkrI	GCNGC	1 cut(s)	211
PleI	GAGTC	2 cut(s)	90, 520
PpsI	GAGTC	2 cut(s)	90, 520
Psp6I	CCWGG	1 cut(s)	609
PspGI	CCWGG	1 cut(s)	609
PspN4I	GGNNCC	1 cut(s)	409
PspPI	GGNCC	1 cut(s)	152
PspXI	VCTCGAGB	1 cut(s)	384
PvuII	CAGCTG	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	2 cut(s)	59, 549
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	2 cut(s)	90, 521
ScrFI	CCNGG	1 cut(s)	611
SduI	GDGCHC	1 cut(s)	643
SfaNI	GCATC	1 cut(s)	239
Sfr274I	CTCGAG	1 cut(s)	384
SinI	GGWCC	1 cut(s)	152
SlaI	CTCGAG	1 cut(s)	384
SmlI	CTYRAG	3 cut(s)	307, 384, 479
SmoI	CTYRAG	3 cut(s)	307, 384, 479
Sse9I	AATT	1 cut(s)	16
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	2 cut(s)	57, 426
SspMI	CTAG	1 cut(s)	338
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	1 cut(s)	609
StyI	CCWWGG	2 cut(s)	138, 421
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	2 cut(s)	69, 335
TaqI	TCGA	2 cut(s)	203, 385
TasI	AATT	1 cut(s)	16
TfiI	GAWTC	2 cut(s)	526, 568
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	2 cut(s)	495, 589
TseI	GCWGC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	89
TspRI	CASTG	2 cut(s)	495, 589
VpaK11BI	GGWCC	1 cut(s)	152
XceI	RCATGY	2 cut(s)	131, 536
XhoI	CTCGAG	1 cut(s)	384
XmiI	GTMKAC	1 cut(s)	621
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.