FvH4_5g10220

WAT1-related protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
5843261 .. 5847494
4234 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g10220.t1

Sequence Viewer

Length: 2085 bp
ATGGAGGGATGGAGTTACTACTTGGCTATGGTACTGGTTCAGCTAGCATATGGTGGATCAAACGTCCTCATAAAACTTTCTCTTGCTGAAGGACTCGATCCAATTGTCTTTGTGGTTTATAGGCATGTTATAGCCATGCTTTTGCTAGGACCATTTGCTTATGTTCTTGAGAGGAAGCAGAGACCTTCCCTCTCAATTTCAATAGCTGCAAAAGTTTTTGTTCTTGCGTCATTTGGGACTACTATCCATCTCAATGTGTACTATGCTGGTTTGGCATACATTTCTCCGACATCTGCTTGCGCCCTGAGTAATGTAATCCCAAGTTTGACGTTTTTATTGGCCGTTCTGCTTCGGATGGAGAAGTTGAACATTAGAAGTACCAGAAATCAAGCAAAGGTGGTTGGTACGCTTCTCTGCATCGGTGGTTCTCTTATTTTCACTTTCTGGAAAGGAGGACACATATTCAAAGGTTTTGTTGATCGGCCCCTGATAACTGCATTTAGCACTGAGTTGAGGCATGGTAAGCAAAACCAGATCAAAGGTTCTGCTCTTATTCTGACTAGTCACATAGCATGGTGTTCATGGCTAATTCTCCAGGCTGTGATCTCCAAAGTCTACCCTGCGCCATTATCACTTACCACTATCATATGCTTTTTCGCATCGTTGCAGTCTTCTTTTCTTGCCTTGTTCTTTGCAAGAAATCCAGCTTCATGGAGACTTGAGTGGAACCTGCAGCTTTTAACCATCGTCTATTGTGGAGTTGTGTTGTCGGCATTAGTCTATTACCTACAAGCATGGTGCATCAGTTACAAGGGACCAGTTTTTGCTGCTATGTTTAGTCCCCTGCAAGTGATTATAGTGGCAATGTTCTCAGCAGTTGCTTTTGCAGAACTACTTTACGTTGGCAGCTTGATCGGAGCATTTCTCATTGCAGTTGGCCTTTACTGTGTGCTATGGGGAAAGAAGCAAGATAGTCTTGTTGCTGAACCCACTCAGAATGGAAAAGGAGAACTTAACAATGATAAAGTGCTCGCAATTTCCGTGATTGATATTCAAGTGAAAAATCCTGTATCCTTTGGTGTAACAAGCATCCTCACAAAATTTTCTCTATTGCAAGGCCTCGATCCTGTTGTCTTTGTGGTTTATAGGCATGTTCTAGCCATGCTTTTGTTAGCACCATTTGCTTATTTTATTGAGAGGAAGCAGAGACCTGAACTGTCAATTTCAGTAGCTGCAAAAATATTTTTGCTTGCATTATTTGGGACCACCATCCATCTCAATGTGTACTACGCCGGTTTATCATACATACCCCCCACAGTTGCTTGCGCCTTGGGTAATGTAGTCCCAAGTTTGACGTTTGTAATGGCGGTTCTGCTTCGGATGGAAAAGTTGAAGATTAAAAGTCGGAGAGGTAAAGCAAAGGTGTTTGGTACACTCATCTGCGTTATTGGTTCTCTTATTTTTACTTTCTGGAAAGAAGGGTACCTATTCAAGGCTTTTGTTGAGAAGCCACTTATCAAGGCATATAATAGTGAGATGAAGCATGGTAAGGAAAACTGGATCAAGGGTTCGGCTCTCATTCTCACTAGTCACATAGCATGGAGTTCATGGCTAATACTCCAGGCCATTGTCTCAAAAGCCTACCCTGCTCCCTTGTCACTAACCACCTTAATATGCTTTTTCGCATCGTTGCAATCTTCCTTTGTTGCCTTGTTCTTTTCAAGAGATCAAGCTTCATGGAGACTTGAATGGGATTTGAAACTTTTAACCATCGTCTATAGTGGAGTTGTGGTTTCGGCATTAGTCTATTACCTGCAAACATGGTGCATCAGACATAAGGGACCAGTTTTCGCAGCTATGTTTAGTCCCCTACAAGTTATTATAGTGGCAATCTTCTCGGCAATTGCTTTCGCAGAGAGACTCCACTTAGGCAGCTTGATTGGAGCATTTCTCATCATCGTTGGCCTTTACTGTGTGCTATGGGGAAAGAACAAAGATAATGCTATTGCTGATCTCAACCTGAATGGAAAAGGAGTGCCTAATGGTGGCATATCCGTGAATGGCCGATATAGTGATGAAGCCTGA

Protein Analysis

695

Amino Acids

76.55

Weight (kDa)

9.57

Isoelectric Point (pI)

30.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 5 - 146 3.7e-14 EamA-like transporter family
EamA PF00892 180 - 318 2.3e-09 EamA-like transporter family
EamA PF00892 357 - 488 7.5e-14 EamA-like transporter family
EamA PF00892 522 - 660 2.1e-13 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 738, 1821
Acc65I GGTACC 1 cut(s) 1482
AccB1I GGYRCC 1 cut(s) 1482
AccI GTMKAC 1 cut(s) 615
AciI CCGC 1 cut(s) 1367
AclWI GGATC 4 cut(s) 64, 92, 1118, 1568
AcoI YGGCCR 2 cut(s) 339, 2062
AcsI RAATTY 1 cut(s) 1100
AcuI CTGAAG 1 cut(s) 108
AfaI GTAC 7 cut(s) 33, 260, 379, 406, 1286, 1432, 1484
AfiI CCNNNNNNNGG 2 cut(s) 1492, 2045
AgsI TTSAA 9 cut(s) 201, 367, 466, 1055, 1393, 1492, 1722, 1748, 1759
AhlI ACTAGT 2 cut(s) 560, 1586
AjnI CCWGG 2 cut(s) 594, 1620
AloI GAACNNNNNNTCC 2 cut(s) 1552, 1584
AluBI AGCT 9 cut(s) 43, 206, 707, 736, 909, 1232, 1733, 1856, 1935
AluI AGCT 9 cut(s) 43, 206, 707, 736, 909, 1232, 1733, 1856, 1935
Alw21I GWGCWC 1 cut(s) 1032
Alw26I GTCTC 6 cut(s) 175, 709, 1201, 1636, 1735, 1912
AlwI GGATC 4 cut(s) 64, 92, 1118, 1568
AlwNI CAGNNNCTG 1 cut(s) 1232
AoxI GGCC 7 cut(s) 339, 482, 937, 1117, 1623, 1963, 2062
ApeKI GCWGC 7 cut(s) 206, 733, 827, 906, 1232, 1853, 1932
ApoI RAATTY 1 cut(s) 1100
Asp718I GGTACC 1 cut(s) 1482
AspLEI GCGC 3 cut(s) 302, 625, 1328
AspS9I GGNCC 5 cut(s) 149, 483, 815, 1263, 1841
AsuNHI GCTAGC 1 cut(s) 43
AvaII GGWCC 4 cut(s) 149, 815, 1263, 1841
BanI GGYRCC 1 cut(s) 1482
BbsI GAAGAC 1 cut(s) 663
Bbv12I GWGCWC 1 cut(s) 1032
BbvI GCAGC 7 cut(s) 193, 745, 814, 918, 1219, 1865, 1944
BccI CCATC 8 cut(s) 3, 255, 349, 752, 1277, 1281, 1375, 1778
BceAI ACGGC 1 cut(s) 326
BcgI CGANNNNNNTGC 4 cut(s) 895, 929, 1878, 1912
BciT130I CCWGG 2 cut(s) 596, 1622
BciVI GTATCC 1 cut(s) 1081
BcoDI GTCTC 6 cut(s) 175, 709, 1201, 1636, 1735, 1912
BcuI ACTAGT 2 cut(s) 560, 1586
BfaI CTAG 5 cut(s) 44, 146, 561, 1157, 1587
BfmI CTRYAG 2 cut(s) 731, 1777
BfuAI ACCTGC 2 cut(s) 738, 1821
BfuI GTATCC 1 cut(s) 1081
BisI GCNGC 7 cut(s) 207, 734, 828, 907, 1233, 1854, 1933
BlsI GCNGC 7 cut(s) 208, 735, 829, 908, 1234, 1855, 1934
Bme1390I CCNGG 2 cut(s) 596, 1622
Bme18I GGWCC 4 cut(s) 149, 815, 1263, 1841
BmgT120I GGNCC 5 cut(s) 149, 483, 815, 1263, 1841
BmiI GGNNCC 6 cut(s) 485, 728, 816, 1264, 1484, 1842
BmrFI CCNGG 2 cut(s) 596, 1622
BmsI GCATC 6 cut(s) 426, 668, 810, 1098, 1694, 1836
BmtI GCTAGC 1 cut(s) 47
BpiI GAAGAC 1 cut(s) 663
BplI GAGNNNNNCTC 4 cut(s) 909, 941, 1935, 1967
BpmI CTGGAG 2 cut(s) 578, 1604
BpuEI CTTGAG 2 cut(s) 188, 740
BsaI GGTCTC 2 cut(s) 175, 1201
BsaJI CCNNGG 1 cut(s) 1329
BsaXI ACNNNNNCTCC 2 cut(s) 1776, 1806
Bsc4I CCNNNNNNNGG 2 cut(s) 1492, 2045
Bse118I RCCGGY 1 cut(s) 1292
Bse1I ACTGG 4 cut(s) 39, 818, 1562, 1844
Bse3DI GCAATG 2 cut(s) 870, 927
BseBI CCWGG 2 cut(s) 596, 1622
BseDI CCNNGG 1 cut(s) 1329
BseGI GGATG 5 cut(s) 14, 360, 1089, 1269, 1386
BseLI CCNNNNNNNGG 2 cut(s) 1492, 2045
BseMI GCAATG 2 cut(s) 870, 927
BseMII CTCAG 4 cut(s) 296, 498, 885, 1007
BseNI ACTGG 4 cut(s) 39, 818, 1562, 1844
BseXI GCAGC 7 cut(s) 193, 745, 814, 918, 1219, 1865, 1944
BshFI GGCC 7 cut(s) 341, 484, 939, 1119, 1625, 1965, 2064
BshNI GGYRCC 1 cut(s) 1482
BsiHKAI GWGCWC 1 cut(s) 1032
BsiSI CCGG 1 cut(s) 1293
BslFI GGGAC 7 cut(s) 250, 825, 828, 1276, 1328, 1851, 1854
BslI CCNNNNNNNGG 2 cut(s) 1492, 2045
BsmAI GTCTC 6 cut(s) 175, 709, 1201, 1636, 1735, 1912
BsmFI GGGAC 7 cut(s) 250, 825, 828, 1276, 1328, 1851, 1854
BsnI GGCC 7 cut(s) 341, 484, 939, 1119, 1625, 1965, 2064
Bso31I GGTCTC 2 cut(s) 175, 1201
Bsp1286I GDGCHC 1 cut(s) 1032
BspACI CCGC 1 cut(s) 1367
BspANI GGCC 7 cut(s) 341, 484, 939, 1119, 1625, 1965, 2064
BspCNI CTCAG 4 cut(s) 297, 499, 884, 1006
BspLI GGNNCC 6 cut(s) 485, 728, 816, 1264, 1484, 1842
BspMAI CTGCAG 1 cut(s) 735
BspMI ACCTGC 2 cut(s) 738, 1821
BspOI GCTAGC 1 cut(s) 47
BspPI GGATC 4 cut(s) 64, 92, 1118, 1568
BspT107I GGYRCC 1 cut(s) 1482
BspTNI GGTCTC 2 cut(s) 175, 1201
BsrDI GCAATG 2 cut(s) 870, 927
BsrFI RCCGGY 1 cut(s) 1292
BsrI ACTGG 4 cut(s) 39, 818, 1562, 1844
BssAI RCCGGY 1 cut(s) 1292
BssECI CCNNGG 1 cut(s) 1329
BssT1I CCWWGG 1 cut(s) 1329
Bst2UI CCWGG 2 cut(s) 596, 1622
Bst4CI ACNGT 4 cut(s) 947, 1218, 1318, 1973
BstAPI GCANNNNNTGC 1 cut(s) 1181
BstC8I GCNNGC 5 cut(s) 45, 298, 1032, 1251, 1324
BstDEI CTNAG 5 cut(s) 305, 507, 871, 993, 1927
BstENI CCTNNNNNAGG 1 cut(s) 1490
BstF5I GGATG 5 cut(s) 14, 360, 1089, 1269, 1386
BstHHI GCGC 3 cut(s) 302, 625, 1328
BstMAI GTCTC 6 cut(s) 175, 709, 1201, 1636, 1735, 1912
BstMWI GCNNNNNNNGC 4 cut(s) 272, 523, 1181, 1646
BstNI CCWGG 2 cut(s) 596, 1622
BstNSI RCATGY 2 cut(s) 128, 1154
BstSCI CCNGG 2 cut(s) 594, 1620
BstSFI CTRYAG 2 cut(s) 731, 1777
BstV1I GCAGC 7 cut(s) 193, 745, 814, 918, 1219, 1865, 1944
BstV2I GAAGAC 1 cut(s) 663
BstXI CCANNNNNNTGG 1 cut(s) 711
BsuI GTATCC 1 cut(s) 1081
BsuRI GGCC 7 cut(s) 341, 484, 939, 1119, 1625, 1965, 2064
BtsCI GGATG 5 cut(s) 14, 360, 1089, 1269, 1386
BtsIMutI CAGTG 1 cut(s) 504
BveI ACCTGC 2 cut(s) 738, 1821
Cac8I GCNNGC 5 cut(s) 45, 298, 1032, 1251, 1324
CaiI CAGNNNCTG 1 cut(s) 1232
CfoI GCGC 3 cut(s) 302, 625, 1328
Cfr10I RCCGGY 1 cut(s) 1292
Cfr13I GGNCC 5 cut(s) 149, 483, 815, 1263, 1841
CseI GACGC 1 cut(s) 216
Csp6I GTAC 7 cut(s) 32, 259, 378, 405, 1285, 1431, 1483
CviQI GTAC 7 cut(s) 32, 259, 378, 405, 1285, 1431, 1483
DdeI CTNAG 5 cut(s) 305, 507, 871, 993, 1927
EaeI YGGCCR 2 cut(s) 339, 2062
Eco130I CCWWGG 1 cut(s) 1329
Eco147I AGGCCT 1 cut(s) 1119
Eco31I GGTCTC 2 cut(s) 175, 1201
Eco47I GGWCC 4 cut(s) 149, 815, 1263, 1841
Eco57I CTGAAG 1 cut(s) 108
EcoNI CCTNNNNNAGG 1 cut(s) 1490
EcoRII CCWGG 2 cut(s) 594, 1620
EcoT14I CCWWGG 1 cut(s) 1329
ErhI CCWWGG 1 cut(s) 1329
FalI AAGNNNNNCTT 4 cut(s) 960, 992, 996, 1028
FaqI GGGAC 7 cut(s) 250, 825, 828, 1276, 1328, 1851, 1854
FauNDI CATATG 2 cut(s) 49, 647
FblI GTMKAC 1 cut(s) 615
Fnu4HI GCNGC 7 cut(s) 207, 734, 828, 907, 1233, 1854, 1933
FokI GGATG 5 cut(s) 21, 367, 1076, 1256, 1393
Fsp4HI GCNGC 7 cut(s) 207, 734, 828, 907, 1233, 1854, 1933
FspBI CTAG 5 cut(s) 44, 146, 561, 1157, 1587
GlaI GCGC 3 cut(s) 301, 624, 1327
GluI GCNGC 7 cut(s) 207, 734, 828, 907, 1233, 1854, 1933
GsuI CTGGAG 2 cut(s) 578, 1604
HaeIII GGCC 7 cut(s) 341, 484, 939, 1119, 1625, 1965, 2064
HapII CCGG 1 cut(s) 1293
HgaI GACGC 1 cut(s) 216
HhaI GCGC 3 cut(s) 302, 625, 1328
Hin6I GCGC 3 cut(s) 300, 623, 1326
HinP1I GCGC 3 cut(s) 300, 623, 1326
HindIII AAGCTT 1 cut(s) 1731
HinfI GANTC 2 cut(s) 93, 1920
HpaII CCGG 1 cut(s) 1293
Hpy166II GTNNAC 4 cut(s) 259, 616, 1285, 1433
Hpy188I TCNGA 8 cut(s) 288, 354, 558, 917, 996, 1380, 1407, 1832
Hpy188III TCNNGA 4 cut(s) 167, 445, 1471, 1722
Hpy8I GTNNAC 4 cut(s) 259, 616, 1285, 1433
HpyAV CCTTC 3 cut(s) 83, 195, 1472
HpyCH4III ACNGT 4 cut(s) 947, 1218, 1318, 1973
HpyCH4IV ACGT 4 cut(s) 63, 329, 900, 1355
HpyF10VI GCNNNNNNNGC 4 cut(s) 272, 523, 1181, 1646
HpyF3I CTNAG 5 cut(s) 305, 507, 871, 993, 1927
HpySE526I ACGT 4 cut(s) 63, 329, 900, 1355
HspAI GCGC 3 cut(s) 300, 623, 1326
KpnI GGTACC 1 cut(s) 1486
LmnI GCTCC 3 cut(s) 917, 1654, 1943
Lsp1109I GCAGC 7 cut(s) 193, 745, 814, 918, 1219, 1865, 1944
LweI GCATC 6 cut(s) 426, 668, 810, 1098, 1694, 1836
MaeI CTAG 5 cut(s) 44, 146, 561, 1157, 1587
MaeII ACGT 4 cut(s) 63, 329, 900, 1355
MaeIII GTNAC 6 cut(s) 14, 563, 806, 1081, 1589, 1656
MboII GAAGA 4 cut(s) 663, 1405, 1689, 1885
MfeI CAATTG 2 cut(s) 102, 1902
MhlI GDGCHC 1 cut(s) 1032
MluCI AATT 7 cut(s) 102, 195, 588, 1035, 1100, 1221, 1902
MlyI GAGTC 2 cut(s) 87, 1914
MmeI TCCRAC 2 cut(s) 311, 1385
MnlI CCTC 9 cut(s) 77, 165, 200, 446, 507, 1103, 1130, 1191, 1403
MseI TTAA 5 cut(s) 740, 1014, 1398, 1670, 1766
MslI CAYNNNNRTG 3 cut(s) 252, 1278, 2054
MspI CCGG 1 cut(s) 1293
MspR9I CCNGG 2 cut(s) 596, 1622
MunI CAATTG 2 cut(s) 102, 1902
MvaI CCWGG 2 cut(s) 596, 1622
MwoI GCNNNNNNNGC 4 cut(s) 272, 523, 1181, 1646
NdeI CATATG 2 cut(s) 49, 647
NheI GCTAGC 1 cut(s) 43
NlaIV GGNNCC 6 cut(s) 485, 728, 816, 1264, 1484, 1842
NmeAIII GCCGAG 1 cut(s) 1877
NmuCI GTSAC 3 cut(s) 563, 1589, 1656
NspI RCATGY 2 cut(s) 128, 1154
PceI AGGCCT 1 cut(s) 1119
PcsI WCGNNNNNNNCGW 1 cut(s) 1038
PkrI GCNGC 7 cut(s) 208, 735, 829, 908, 1234, 1855, 1934
PleI GAGTC 2 cut(s) 87, 1914
PpsI GAGTC 2 cut(s) 87, 1914
Psp6I CCWGG 2 cut(s) 594, 1620
PspGI CCWGG 2 cut(s) 594, 1620
PspN4I GGNNCC 6 cut(s) 485, 728, 816, 1264, 1484, 1842
PspPI GGNCC 5 cut(s) 149, 483, 815, 1263, 1841
PsrI GAACNNNNNNTAC 2 cut(s) 1353, 1385
PstI CTGCAG 1 cut(s) 735
PstNI CAGNNNCTG 1 cut(s) 1232
RsaI GTAC 7 cut(s) 33, 260, 379, 406, 1286, 1432, 1484
RsaNI GTAC 7 cut(s) 32, 259, 378, 405, 1285, 1431, 1483
RseI CAYNNNNRTG 3 cut(s) 252, 1278, 2054
SaqAI TTAA 5 cut(s) 740, 1014, 1398, 1670, 1766
SatI GCNGC 7 cut(s) 207, 734, 828, 907, 1233, 1854, 1933
Sau96I GGNCC 5 cut(s) 149, 483, 815, 1263, 1841
SchI GAGTC 2 cut(s) 87, 1914
ScrFI CCNGG 2 cut(s) 596, 1622
SduI GDGCHC 1 cut(s) 1032
SfaNI GCATC 6 cut(s) 426, 668, 810, 1098, 1694, 1836
SfcI CTRYAG 2 cut(s) 731, 1777
SinI GGWCC 4 cut(s) 149, 815, 1263, 1841
SmiMI CAYNNNNRTG 3 cut(s) 252, 1278, 2054
SmlI CTYRAG 2 cut(s) 167, 719
SmoI CTYRAG 2 cut(s) 167, 719
SpeI ACTAGT 2 cut(s) 560, 1586
Sse9I AATT 7 cut(s) 102, 195, 588, 1035, 1100, 1221, 1902
SseBI AGGCCT 1 cut(s) 1119
SsiI CCGC 1 cut(s) 1367
SspI AATATT 1 cut(s) 1242
SspMI CTAG 5 cut(s) 44, 146, 561, 1157, 1587
StuI AGGCCT 1 cut(s) 1119
StyD4I CCNGG 2 cut(s) 594, 1620
StyI CCWWGG 1 cut(s) 1329
TaaI ACNGT 4 cut(s) 947, 1218, 1318, 1973
TaiI ACGT 4 cut(s) 66, 332, 903, 1358
TaqI TCGA 2 cut(s) 96, 1122
TasI AATT 7 cut(s) 102, 195, 588, 1035, 1100, 1221, 1902
TatI WGTACW 2 cut(s) 258, 1284
Tru1I TTAA 5 cut(s) 740, 1014, 1398, 1670, 1766
Tru9I TTAA 5 cut(s) 740, 1014, 1398, 1670, 1766
TscAI CASTG 1 cut(s) 511
TseFI GTSAC 3 cut(s) 563, 1589, 1656
TseI GCWGC 7 cut(s) 206, 733, 827, 906, 1232, 1853, 1932
Tsp45I GTSAC 3 cut(s) 563, 1589, 1656
TspDTI ATGAA 5 cut(s) 570, 699, 1553, 1596, 1725
TspGWI ACGGA 2 cut(s) 1030, 2044
TspRI CASTG 1 cut(s) 511
VpaK11BI GGWCC 4 cut(s) 149, 815, 1263, 1841
XagI CCTNNNNNAGG 1 cut(s) 1490
XapI RAATTY 1 cut(s) 1100
XceI RCATGY 2 cut(s) 128, 1154
XmiI GTMKAC 1 cut(s) 615
XspI CTAG 5 cut(s) 44, 146, 561, 1157, 1587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.