Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003064

Physical Location & Seq

Genomic Coordinates Forward (+)

7878377 .. 7880363

Gene Structure 1987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG093900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGAGGGATGCAGGTACTACGTGGTAATGATACTGGTTCAGCTGGCCTATGGTGGATCAAGCGTCCTCGTAAAACTTTCTCTCGAGGAAGGTCTCAAGCCAGTTGTCTTTGTGGTTTATAGGCATGTTATGGCCATGTTTTTGCTAGCACCATTTGCTTATTTCCTTGAAAAGAAGCAGAGACCCTCAATCTCATTTTCAATAGCTGCAAAAGTTTTTGTGCTGACATTATTTGGGACTACCATCCATCTCAATGTGTACTATACTGGTTTAGCATACACGTCCCCCACTGTTGCTTGCGCCTTGAGTAATGTAGTCCCAAGTTTGACGTTTGCAATGGCGGTTCTGCTTCGGATGGAGAATTTGAATATTAAAAGTGCCAGAGGTCAAGCAAAGGTAGTTGGTACACTTCTTTGCATCGGTGGTTCTCTAATGTTCACTTTCTGGAAAGGATACCTATTCCAGGGTTTTGTTGAGAAGCCACTGATCAGTGTATATAGCACTGAGTTGAAGCACGGTAACGAAAACTGGATTAAGGGTTCTGGTCTTATTCTGACTAGTCACATAGTATGGTGTTCGTGGCTGATTCTCCAGGCTGTGGTCTGCAAAGTCTACCCTGCTCCATTGTCACTGACCACCCTCATATGCTTCTTCGCATCGCTGCAATCTTCCATTGTTGCTTTGTTTTTTGCAAGAGATCAAGCTTCATGGAGACTTGATTCGAATGTGCAACTTTTAACCATCGCCTACAGTGGATTTGTGAGCTCAGCATTAGTCTATTACCTGCAAACATGGTGCATCAGTTACAAGGGACCAGTTTTTACAGCTATGTTTAGCCCCCTACAAGTCATTATAGTTGCACTGTTCTCGGCATTCGCTTTTGCAGAGCGACTTCACGTCGGCAGCTTGATAGGAGCATTTCTCATTATAGTTGGCCTTTACTGTTTTCTATGGGGAAAGAAGAAAGATGGCCTTGTTGCTGAACTCACAGAGAATGAAAAAGGAGTACTTAATGATGATAAGGTGCTCGGCATTTCCCTGAACGATATCAAAGTGACGAATCCTGTGACAATAGATCCTGTAACTACAGAAAGGACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

366

Amino Acids

40.47

Weight (kDa)

8.98

Isoelectric Point (pI)

26.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	7 - 146	1.1e-13	EamA-like transporter family
EamA	PF00892	180 - 317	4.7e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003064)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10210 FvH4_5g10220
malus_domestica	MD06G1126900.v1.1 MD06G1127200.v1.1 MD14G1142400.v1.1
prunus_persica	Prupe.4G100300_v2.0.a1 Prupe.5G136500_v2.0.a1 Prupe.5G136500_v2.0.a1
pyrus_communis	pycom06g11660 pycom14g11780 pycom14g11810
rosa_chinensis	RchiOBHm_Chr7g0188001 RchiOBHm_Chr7g0188011
rosa_laevigata	RLG00000004733 RLG00000004734 RLG00000004735
rosa_multiflora	Rmu_co8503989.1_g000001 Rmu_sc0003624.1_g000020 Rmu_ssc0000422.1_g000012
rosa_roxburghii	Rroxscaffold_3G00266810 Rroxscaffold_3G00266820
rosa_rugosa	Rorug06G0486700 Rorug06G0486700 Rorug06G0486800 Rorug06G0486900
rosa_samantha	Rh7AG091600 Rh7AG091700 Rh7BG093100 Rh7BG093200 Rh7BG093300 Rh7CG092400 Rh7CG092500 Rh7CG092700 Rh7DG093800 Rh7DG093900
rosa_wichuraiana	Rw7G007900 Rw7G007910 Rw7G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	3, 792
AccB7I	CCANNNNNTGG	1 cut(s)	598
AccI	GTMKAC	1 cut(s)	612
AciI	CCGC	1 cut(s)	341
AclWI	GGATC	2 cut(s)	64, 1070
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	361
AfaI	GTAC	4 cut(s)	17, 260, 406, 1008
AfiI	CCNNNNNNNGG	2 cut(s)	463, 598
AflIII	ACRYGT	1 cut(s)	279
AgsI	TTSAA	4 cut(s)	170, 201, 367, 511
AhdI	GACNNNNNGTC	1 cut(s)	896
AhlI	ACTAGT	1 cut(s)	557
AjiI	CACGTC	2 cut(s)	282, 898
AjnI	CCWGG	2 cut(s)	462, 591
AloI	GAACNNNNNNTCC	2 cut(s)	523, 555
AluBI	AGCT	6 cut(s)	43, 206, 704, 765, 827, 906
AluI	AGCT	6 cut(s)	43, 206, 704, 765, 827, 906
Alw21I	GWGCWC	2 cut(s)	767, 1029
Alw26I	GTCTC	3 cut(s)	98, 175, 706
AlwI	GGATC	2 cut(s)	64, 1070
Ama87I	CYCGRG	1 cut(s)	83
AoxI	GGCC	4 cut(s)	45, 132, 934, 970
ApeKI	GCWGC	3 cut(s)	206, 661, 903
ApoI	RAATTY	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	812
AsuII	TTCGAA	1 cut(s)	722
AsuNHI	GCTAGC	1 cut(s)	145
AvaI	CYCGRG	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	812
BalI	TGGCCA	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	767
Bbv12I	GWGCWC	2 cut(s)	767, 1029
BbvI	GCAGC	3 cut(s)	193, 648, 915
BccI	CCATC	5 cut(s)	251, 255, 349, 749, 962
BcgI	CGANNNNNNTGC	2 cut(s)	849, 883
BciT130I	CCWGG	2 cut(s)	464, 593
BciVI	GTATCC	1 cut(s)	446
BclI	TGATCA	1 cut(s)	486
BcoDI	GTCTC	3 cut(s)	98, 175, 706
BcuI	ACTAGT	1 cut(s)	557
BfaI	CTAG	2 cut(s)	146, 558
BfmI	CTRYAG	2 cut(s)	748, 1086
BfuAI	ACCTGC	2 cut(s)	3, 792
BfuI	GTATCC	1 cut(s)	446
BisI	GCNGC	3 cut(s)	207, 662, 904
BlpI	GCTNAGC	1 cut(s)	766
BlsI	GCNGC	3 cut(s)	208, 663, 905
BmcAI	AGTACT	1 cut(s)	1008
Bme1390I	CCNGG	2 cut(s)	464, 593
Bme18I	GGWCC	1 cut(s)	812
BmeRI	GACNNNNNGTC	1 cut(s)	896
BmeT110I	CYCGRG	1 cut(s)	83
BmgBI	CACGTC	2 cut(s)	282, 898
BmgT120I	GGNCC	1 cut(s)	812
BmiI	GGNNCC	1 cut(s)	813
BmrFI	CCNGG	2 cut(s)	464, 593
BmsI	GCATC	3 cut(s)	426, 665, 807
BmtI	GCTAGC	1 cut(s)	149
BplI	GAGNNNNNCTC	2 cut(s)	906, 938
BpmI	CTGGAG	1 cut(s)	575
Bpu1102I	GCTNAGC	1 cut(s)	766
Bpu14I	TTCGAA	1 cut(s)	722
BpuEI	CTTGAG	2 cut(s)	80, 325
BsaAI	YACGTR	1 cut(s)	22
BsaI	GGTCTC	2 cut(s)	98, 175
BsaJI	CCNNGG	1 cut(s)	463
Bsc4I	CCNNNNNNNGG	2 cut(s)	463, 598
Bse1I	ACTGG	5 cut(s)	39, 101, 271, 533, 815
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	2 cut(s)	464, 593
BseDI	CCNNGG	1 cut(s)	463
BseGI	GGATG	3 cut(s)	14, 243, 360
BseLI	CCNNNNNNNGG	2 cut(s)	463, 598
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	495, 780
BseNI	ACTGG	5 cut(s)	39, 101, 271, 533, 815
BseXI	GCAGC	3 cut(s)	193, 648, 915
BshFI	GGCC	4 cut(s)	47, 134, 936, 972
BsiHKAI	GWGCWC	2 cut(s)	767, 1029
BsiHKCI	CYCGRG	1 cut(s)	83
BslFI	GGGAC	4 cut(s)	250, 268, 302, 825
BslI	CCNNNNNNNGG	2 cut(s)	463, 598
BsmAI	GTCTC	3 cut(s)	98, 175, 706
BsmFI	GGGAC	4 cut(s)	250, 268, 302, 825
BsmI	GAATGC	1 cut(s)	872
BsnI	GGCC	4 cut(s)	47, 134, 936, 972
Bso31I	GGTCTC	2 cut(s)	98, 175
BsoBI	CYCGRG	1 cut(s)	83
Bsp119I	TTCGAA	1 cut(s)	722
Bsp1286I	GDGCHC	2 cut(s)	767, 1029
Bsp143I	GATC	4 cut(s)	56, 486, 697, 1075
Bsp1720I	GCTNAGC	1 cut(s)	766
BspACI	CCGC	1 cut(s)	341
BspANI	GGCC	4 cut(s)	47, 134, 936, 972
BspCNI	CTCAG	2 cut(s)	496, 779
BspLI	GGNNCC	1 cut(s)	813
BspMI	ACCTGC	2 cut(s)	3, 792
BspOI	GCTAGC	1 cut(s)	149
BspPI	GGATC	2 cut(s)	64, 1070
BspT104I	TTCGAA	1 cut(s)	722
BspTNI	GGTCTC	2 cut(s)	98, 175
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	5 cut(s)	39, 101, 271, 533, 815
BssECI	CCNNGG	1 cut(s)	463
BssMI	GATC	4 cut(s)	56, 486, 697, 1075
Bst2UI	CCWGG	2 cut(s)	464, 593
Bst4CI	ACNGT	5 cut(s)	292, 518, 752, 864, 944
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstBAI	YACGTR	1 cut(s)	22
BstBI	TTCGAA	1 cut(s)	722
BstC8I	GCNNGC	3 cut(s)	45, 147, 298
BstDEI	CTNAG	2 cut(s)	504, 766
BstENI	CCTNNNNNAGG	1 cut(s)	461
BstF5I	GGATG	3 cut(s)	14, 243, 360
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	4 cut(s)	59, 489, 700, 1078
BstMAI	GTCTC	3 cut(s)	98, 175, 706
BstMBI	GATC	4 cut(s)	56, 486, 697, 1075
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	2 cut(s)	464, 593
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	2 cut(s)	462, 591
BstSFI	CTRYAG	2 cut(s)	748, 1086
BstV1I	GCAGC	3 cut(s)	193, 648, 915
BstX2I	RGATCY	1 cut(s)	1075
BstYI	RGATCY	1 cut(s)	1075
BsuI	GTATCC	1 cut(s)	446
BsuRI	GGCC	4 cut(s)	47, 134, 936, 972
BtgZI	GCGATG	2 cut(s)	642, 727
BtrI	CACGTC	2 cut(s)	282, 898
BtsCI	GGATG	3 cut(s)	14, 243, 360
BtsIMutI	CAGTG	7 cut(s)	288, 482, 496, 501, 629, 757, 860
BveI	ACCTGC	2 cut(s)	3, 792
Cac8I	GCNNGC	3 cut(s)	45, 147, 298
CfoI	GCGC	1 cut(s)	302
Cfr13I	GGNCC	1 cut(s)	812
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	4 cut(s)	16, 259, 405, 1007
CviAII	CATG	4 cut(s)	125, 136, 708, 792
CviQI	GTAC	4 cut(s)	16, 259, 405, 1007
DdeI	CTNAG	2 cut(s)	504, 766
DpnI	GATC	4 cut(s)	58, 488, 699, 1077
DpnII	GATC	4 cut(s)	56, 486, 697, 1075
DriI	GACNNNNNGTC	1 cut(s)	896
EaeI	YGGCCR	1 cut(s)	132
Eam1105I	GACNNNNNGTC	1 cut(s)	896
Ecl136II	GAGCTC	1 cut(s)	765
Eco24I	GRGCYC	1 cut(s)	767
Eco31I	GGTCTC	2 cut(s)	98, 175
Eco32I	GATATC	1 cut(s)	1048
Eco47I	GGWCC	1 cut(s)	812
Eco53kI	GAGCTC	1 cut(s)	765
Eco88I	CYCGRG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	765
EcoNI	CCTNNNNNAGG	1 cut(s)	461
EcoRII	CCWGG	2 cut(s)	462, 591
EcoRV	GATATC	1 cut(s)	1048
EcoT38I	GRGCYC	1 cut(s)	767
FaeI	CATG	4 cut(s)	128, 139, 711, 795
FalI	AAGNNNNNCTT	4 cut(s)	957, 989, 993, 1025
FaqI	GGGAC	4 cut(s)	250, 268, 302, 825
FatI	CATG	4 cut(s)	124, 135, 707, 791
FauNDI	CATATG	1 cut(s)	644
FbaI	TGATCA	1 cut(s)	486
FblI	GTMKAC	1 cut(s)	612
Fnu4HI	GCNGC	3 cut(s)	207, 662, 904
FokI	GGATG	3 cut(s)	21, 230, 367
FriOI	GRGCYC	1 cut(s)	767
Fsp4HI	GCNGC	3 cut(s)	207, 662, 904
FspBI	CTAG	2 cut(s)	146, 558
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	3 cut(s)	207, 662, 904
GsuI	CTGGAG	1 cut(s)	575
HaeIII	GGCC	4 cut(s)	47, 134, 936, 972
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	4 cut(s)	128, 139, 711, 795
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HindIII	AAGCTT	1 cut(s)	702
HinfI	GANTC	3 cut(s)	586, 719, 1060
Hpy166II	GTNNAC	4 cut(s)	259, 407, 438, 613
Hpy188I	TCNGA	2 cut(s)	354, 555
Hpy188III	TCNNGA	2 cut(s)	83, 445
Hpy8I	GTNNAC	4 cut(s)	259, 407, 438, 613
Hpy99I	CGWCG	1 cut(s)	902
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	5 cut(s)	292, 518, 752, 864, 944
HpyCH4IV	ACGT	5 cut(s)	21, 281, 329, 897, 1097
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	2 cut(s)	504, 766
HpySE526I	ACGT	5 cut(s)	21, 281, 329, 897, 1097
Hsp92II	CATG	4 cut(s)	128, 139, 711, 795
HspAI	GCGC	1 cut(s)	300
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	4 cut(s)	56, 486, 697, 1075
LmnI	GCTCC	2 cut(s)	625, 914
Lsp1109I	GCAGC	3 cut(s)	193, 648, 915
LweI	GCATC	3 cut(s)	426, 665, 807
MaeI	CTAG	2 cut(s)	146, 558
MaeII	ACGT	5 cut(s)	21, 281, 329, 897, 1097
MaeIII	GTNAC	7 cut(s)	518, 560, 627, 803, 1054, 1066, 1081
MalI	GATC	4 cut(s)	58, 488, 699, 1077
MboI	GATC	4 cut(s)	56, 486, 697, 1075
MboII	GAAGA	3 cut(s)	643, 660, 973
MflI	RGATCY	1 cut(s)	1075
MhlI	GDGCHC	2 cut(s)	767, 1029
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	1 cut(s)	361
MluNI	TGGCCA	1 cut(s)	134
MnlI	CCTC	5 cut(s)	77, 79, 196, 377, 650
Mox20I	TGGCCA	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	4 cut(s)	372, 534, 737, 1011
MslI	CAYNNNNRTG	1 cut(s)	252
Msp20I	TGGCCA	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	43
MspR9I	CCNGG	2 cut(s)	464, 593
Mva1269I	GAATGC	1 cut(s)	872
MvaI	CCWGG	2 cut(s)	464, 593
MwoI	GCNNNNNNNGC	1 cut(s)	155
NdeI	CATATG	1 cut(s)	644
NdeII	GATC	4 cut(s)	56, 486, 697, 1075
NheI	GCTAGC	1 cut(s)	145
NlaIII	CATG	4 cut(s)	128, 139, 711, 795
NlaIV	GGNNCC	1 cut(s)	813
NmeAIII	GCCGAG	2 cut(s)	848, 1008
NmuCI	GTSAC	4 cut(s)	560, 627, 1054, 1066
NspI	RCATGY	1 cut(s)	128
NspV	TTCGAA	1 cut(s)	722
PaeR7I	CTCGAG	1 cut(s)	83
PctI	GAATGC	1 cut(s)	872
PfeI	GAWTC	3 cut(s)	586, 719, 1060
PflMI	CCANNNNNTGG	1 cut(s)	598
PkrI	GCNGC	3 cut(s)	208, 663, 905
Ppu21I	YACGTR	1 cut(s)	22
Psp124BI	GAGCTC	1 cut(s)	767
Psp6I	CCWGG	2 cut(s)	462, 591
PspGI	CCWGG	2 cut(s)	462, 591
PspN4I	GGNNCC	1 cut(s)	813
PspPI	GGNCC	1 cut(s)	812
PsuI	RGATCY	1 cut(s)	1075
PvuII	CAGCTG	1 cut(s)	43
RsaI	GTAC	4 cut(s)	17, 260, 406, 1008
RsaNI	GTAC	4 cut(s)	16, 259, 405, 1007
RseI	CAYNNNNRTG	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	767
SaqAI	TTAA	4 cut(s)	372, 534, 737, 1011
SatI	GCNGC	3 cut(s)	207, 662, 904
Sau3AI	GATC	4 cut(s)	56, 486, 697, 1075
Sau96I	GGNCC	1 cut(s)	812
ScaI	AGTACT	1 cut(s)	1008
ScrFI	CCNGG	2 cut(s)	464, 593
SduI	GDGCHC	2 cut(s)	767, 1029
SfaNI	GCATC	3 cut(s)	426, 665, 807
SfcI	CTRYAG	2 cut(s)	748, 1086
Sfr274I	CTCGAG	1 cut(s)	83
SfuI	TTCGAA	1 cut(s)	722
SinI	GGWCC	1 cut(s)	812
SlaI	CTCGAG	1 cut(s)	83
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	3 cut(s)	83, 95, 304
SmoI	CTYRAG	3 cut(s)	83, 95, 304
SpeI	ACTAGT	1 cut(s)	557
Sse9I	AATT	1 cut(s)	361
SsiI	CCGC	1 cut(s)	341
SspI	AATATT	1 cut(s)	370
SspMI	CTAG	2 cut(s)	146, 558
SstI	GAGCTC	1 cut(s)	767
StyD4I	CCNGG	2 cut(s)	462, 591
TaaI	ACNGT	5 cut(s)	292, 518, 752, 864, 944
TaiI	ACGT	5 cut(s)	24, 284, 332, 900, 1100
TaqI	TCGA	2 cut(s)	84, 722
TasI	AATT	1 cut(s)	361
TatI	WGTACW	2 cut(s)	258, 1006
TfiI	GAWTC	3 cut(s)	586, 719, 1060
Tru1I	TTAA	4 cut(s)	372, 534, 737, 1011
Tru9I	TTAA	4 cut(s)	372, 534, 737, 1011
TscAI	CASTG	7 cut(s)	295, 489, 496, 508, 636, 757, 867
TseFI	GTSAC	4 cut(s)	560, 627, 1054, 1066
TseI	GCWGC	3 cut(s)	206, 661, 903
Tsp45I	GTSAC	4 cut(s)	560, 627, 1054, 1066
TspDTI	ATGAA	2 cut(s)	696, 1011
TspRI	CASTG	7 cut(s)	295, 489, 496, 508, 636, 757, 867
Van91I	CCANNNNNTGG	1 cut(s)	598
VpaK11BI	GGWCC	1 cut(s)	812
XagI	CCTNNNNNAGG	1 cut(s)	461
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	1 cut(s)	128
XhoI	CTCGAG	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	612
XspI	CTAG	2 cut(s)	146, 558
ZrmI	AGTACT	1 cut(s)	1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.