Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003064

Physical Location & Seq

Genomic Coordinates Forward (+)

6865326 .. 6867234

Gene Structure 1909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG093100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGACTACCCTCATACATCCATGGAGGGATGCAGTTACTACTTGGCAATGGTACTGGTACAGCTGGCATATGGTGGATCAAACGTCCTCATAAAACTTTCTCTTGCCGAAGGACTCAATCCAATCGTGTTTGTGGTTTATAGGCATGTTATCGCCATGCTCTTGCTAGGACCATTTGCTTATGTTCTTGAGAGGAAGCAGAGACCTTCGCTCTCAATTTCAATAGCTGCAAAAGTTTTTGTGCTTGCATTATTTGGGACTACTATCCATCTCAATGTGTACTATGCTGGTTTAGCATACATTTCCCCAACATCTGCTTGCGCCCTGAGTAATGTAATCCCAAGTTTGACGTTTTTATTGGCCGTTCTGCTTCGGATGGAGAAATTGCACATTAGAAGTACCAGAAGTCAAGCAAAGGTTGTCGGTACACTTCTCTGCATCGGTGGTTCTCTTATTCTCACCTTCTGGAAAGGAGGACACCTATTCAAGGGTTTTGTTGAGAGGCCCCTGATAACTGCATTTAACACTGAGTTACAGCATGGTAAGCAAAACCGGATCAAGGGTTCTGCTCTAATTCTGACTAGTCATATAGCATGGTGTTCATGGCTAATTCTCCAGGCTGTGATCTCCAAAGTCTACCCTGCTCCATTGTCACTAACCACCATCATATGCTTTTTCGCATCATTGCAATCTTCCTTTCTTGCCTTGTTCTTTGCAAGAAATCCAGCTTCGTGGAGACTTGAGTGGAACCTACAACTTTTAACCATCATCTACTCTGGAGTTGTGTTGTCAGCATTATTCTATTACCTGCAAGCGTGGTGCATCAGTTACAAGGGACCAGTTTTTGCGGCTATGTTTAGCCCCCTACAAGTCATTGTAGTGGCAATGTTCTCGGCAGTTGCTTTTGCAGAGCGACTTCACTTTGGCAGCTTGATCGGAGCATTTCTCATTATCGTTGGCCTTTACTGTGTGCTATGGGTAAAGAGGCAAGATGGTCTTGTTGCTGAACCCCCACAGAGTGGAAAAGGAGTTCTTAACAATGATAAAGTGCTCGCAATTTCCAAGATTGATATTCAAGTGATACATCCTGTAACTAGAGAAAGTACATGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

371

Amino Acids

40.92

Weight (kDa)

9.48

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	14 - 154	7.4e-15	EamA-like transporter family
EamA	PF00892	187 - 325	5.6e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003064)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10210 FvH4_5g10220
malus_domestica	MD06G1126900.v1.1 MD06G1127200.v1.1 MD14G1142400.v1.1
prunus_persica	Prupe.4G100300_v2.0.a1 Prupe.5G136500_v2.0.a1 Prupe.5G136500_v2.0.a1
pyrus_communis	pycom06g11660 pycom14g11780 pycom14g11810
rosa_chinensis	RchiOBHm_Chr7g0188001 RchiOBHm_Chr7g0188011
rosa_laevigata	RLG00000004733 RLG00000004734 RLG00000004735
rosa_multiflora	Rmu_co8503989.1_g000001 Rmu_sc0003624.1_g000020 Rmu_ssc0000422.1_g000012
rosa_roxburghii	Rroxscaffold_3G00266810 Rroxscaffold_3G00266820
rosa_rugosa	Rorug06G0486700 Rorug06G0486700 Rorug06G0486800 Rorug06G0486900
rosa_samantha	Rh7AG091600 Rh7AG091700 Rh7BG093100 Rh7BG093200 Rh7BG093300 Rh7CG092400 Rh7CG092500 Rh7CG092700 Rh7DG093800 Rh7DG093900
rosa_wichuraiana	Rw7G007900 Rw7G007910 Rw7G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	816
AccB7I	CCANNNNNTGG	1 cut(s)	1019
AccI	GTMKAC	1 cut(s)	636
AciI	CCGC	1 cut(s)	848
AclWI	GGATC	2 cut(s)	85, 563
AcoI	YGGCCR	1 cut(s)	360
AdeI	CACNNNGTG	1 cut(s)	1019
AfaI	GTAC	6 cut(s)	54, 60, 281, 400, 427, 1105
AfiI	CCNNNNNNNGG	3 cut(s)	487, 559, 1019
AflIII	ACRYGT	1 cut(s)	1106
AgsI	TTSAA	3 cut(s)	222, 487, 1076
AhlI	ACTAGT	1 cut(s)	581
AjnI	CCWGG	1 cut(s)	615
AloI	GAACNNNNNNTCC	4 cut(s)	547, 579, 1014, 1046
AluBI	AGCT	4 cut(s)	64, 227, 728, 930
AluI	AGCT	4 cut(s)	64, 227, 728, 930
Alw21I	GWGCWC	1 cut(s)	1053
Alw26I	GTCTC	2 cut(s)	196, 730
AlwI	GGATC	2 cut(s)	85, 563
AoxI	GGCC	3 cut(s)	360, 503, 958
ApeKI	GCWGC	2 cut(s)	227, 927
AspLEI	GCGC	1 cut(s)	323
AspS9I	GGNCC	3 cut(s)	170, 504, 836
AsuHPI	GGTGA	1 cut(s)	451
AvaII	GGWCC	2 cut(s)	170, 836
Bbv12I	GWGCWC	1 cut(s)	1053
BbvI	GCAGC	2 cut(s)	214, 939
BccI	CCATC	5 cut(s)	276, 370, 671, 773, 986
BceAI	ACGGC	1 cut(s)	347
BcgI	CGANNNNNNTGC	4 cut(s)	873, 907, 916, 950
BciT130I	CCWGG	1 cut(s)	617
BcoDI	GTCTC	2 cut(s)	196, 730
BcuI	ACTAGT	1 cut(s)	581
BfaI	CTAG	3 cut(s)	167, 582, 1095
BfuAI	ACCTGC	1 cut(s)	816
BisI	GCNGC	3 cut(s)	228, 849, 928
BlsI	GCNGC	3 cut(s)	229, 850, 929
Bme1390I	CCNGG	1 cut(s)	617
Bme18I	GGWCC	2 cut(s)	170, 836
BmgT120I	GGNCC	3 cut(s)	170, 504, 836
BmiI	GGNNCC	3 cut(s)	506, 749, 837
BmrFI	CCNGG	1 cut(s)	617
BmsI	GCATC	4 cut(s)	20, 447, 689, 831
BplI	GAGNNNNNCTC	2 cut(s)	930, 962
BpmI	CTGGAG	2 cut(s)	599, 798
BpuEI	CTTGAG	2 cut(s)	209, 761
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	552
Bsc4I	CCNNNNNNNGG	3 cut(s)	487, 559, 1019
Bse1I	ACTGG	2 cut(s)	60, 839
Bse3DI	GCAATG	3 cut(s)	54, 683, 891
BseBI	CCWGG	1 cut(s)	617
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	4 cut(s)	17, 35, 381, 1084
BseLI	CCNNNNNNNGG	3 cut(s)	487, 559, 1019
BseMI	GCAATG	3 cut(s)	54, 683, 891
BseMII	CTCAG	2 cut(s)	317, 519
BseNI	ACTGG	2 cut(s)	60, 839
BseXI	GCAGC	2 cut(s)	214, 939
BshFI	GGCC	3 cut(s)	362, 505, 960
BsiHKAI	GWGCWC	1 cut(s)	1053
BsiSI	CCGG	1 cut(s)	553
BslFI	GGGAC	2 cut(s)	271, 849
BslI	CCNNNNNNNGG	3 cut(s)	487, 559, 1019
BsmAI	GTCTC	2 cut(s)	196, 730
BsmFI	GGGAC	2 cut(s)	271, 849
BsnI	GGCC	3 cut(s)	362, 505, 960
Bso31I	GGTCTC	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	1053
Bsp143I	GATC	4 cut(s)	77, 555, 624, 933
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	1 cut(s)	848
BspANI	GGCC	3 cut(s)	362, 505, 960
BspCNI	CTCAG	2 cut(s)	318, 520
BspLI	GGNNCC	3 cut(s)	506, 749, 837
BspMI	ACCTGC	1 cut(s)	816
BspPI	GGATC	2 cut(s)	85, 563
BspTNI	GGTCTC	1 cut(s)	196
BsrDI	GCAATG	3 cut(s)	54, 683, 891
BsrI	ACTGG	2 cut(s)	60, 839
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	4 cut(s)	77, 555, 624, 933
BssT1I	CCWWGG	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	1 cut(s)	968
BstC8I	GCNNGC	5 cut(s)	66, 246, 319, 813, 1053
BstDEI	CTNAG	2 cut(s)	326, 528
BstDSI	CCRYGG	1 cut(s)	21
BstENI	CCTNNNNNAGG	1 cut(s)	485
BstF5I	GGATG	4 cut(s)	17, 35, 381, 1084
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	4 cut(s)	80, 558, 627, 936
BstMAI	GTCTC	2 cut(s)	196, 730
BstMBI	GATC	4 cut(s)	77, 555, 624, 933
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 544
BstNI	CCWGG	1 cut(s)	617
BstNSI	RCATGY	2 cut(s)	149, 1110
BstSCI	CCNGG	1 cut(s)	615
BstV1I	GCAGC	2 cut(s)	214, 939
BstXI	CCANNNNNNTGG	1 cut(s)	732
BsuRI	GGCC	3 cut(s)	362, 505, 960
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	4 cut(s)	17, 35, 381, 1084
BtsIMutI	CAGTG	1 cut(s)	525
BveI	ACCTGC	1 cut(s)	816
Cac8I	GCNNGC	5 cut(s)	66, 246, 319, 813, 1053
CfoI	GCGC	1 cut(s)	323
Cfr13I	GGNCC	3 cut(s)	170, 504, 836
Csp6I	GTAC	6 cut(s)	53, 59, 280, 399, 426, 1104
CviAII	CATG	7 cut(s)	22, 146, 157, 539, 594, 603, 1107
CviQI	GTAC	6 cut(s)	53, 59, 280, 399, 426, 1104
DdeI	CTNAG	2 cut(s)	326, 528
DpnI	GATC	4 cut(s)	79, 557, 626, 935
DpnII	GATC	4 cut(s)	77, 555, 624, 933
DraIII	CACNNNGTG	1 cut(s)	1019
EaeI	YGGCCR	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	196
Eco47I	GGWCC	2 cut(s)	170, 836
EcoNI	CCTNNNNNAGG	1 cut(s)	485
EcoO109I	RGGNCCY	1 cut(s)	504
EcoRII	CCWGG	1 cut(s)	615
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	7 cut(s)	25, 149, 160, 542, 597, 606, 1110
FalI	AAGNNNNNCTT	4 cut(s)	981, 1013, 1017, 1049
FaqI	GGGAC	2 cut(s)	271, 849
FatI	CATG	7 cut(s)	21, 145, 156, 538, 593, 602, 1106
FauNDI	CATATG	2 cut(s)	70, 668
FblI	GTMKAC	1 cut(s)	636
Fnu4HI	GCNGC	3 cut(s)	228, 849, 928
FokI	GGATG	4 cut(s)	4, 42, 388, 1071
Fsp4HI	GCNGC	3 cut(s)	228, 849, 928
FspBI	CTAG	3 cut(s)	167, 582, 1095
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	3 cut(s)	228, 849, 928
GsuI	CTGGAG	2 cut(s)	599, 798
HaeIII	GGCC	3 cut(s)	362, 505, 960
HapII	CCGG	1 cut(s)	553
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	7 cut(s)	25, 149, 160, 542, 597, 606, 1110
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HinfI	GANTC	1 cut(s)	114
HpaII	CCGG	1 cut(s)	553
HphI	GGTGA	1 cut(s)	451
Hpy166II	GTNNAC	3 cut(s)	280, 428, 637
Hpy188I	TCNGA	3 cut(s)	375, 579, 938
Hpy188III	TCNNGA	3 cut(s)	188, 466, 777
Hpy8I	GTNNAC	3 cut(s)	280, 428, 637
HpyAV	CCTTC	3 cut(s)	104, 216, 472
HpyCH4III	ACNGT	1 cut(s)	968
HpyCH4IV	ACGT	2 cut(s)	84, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 544
HpyF3I	CTNAG	2 cut(s)	326, 528
HpySE526I	ACGT	2 cut(s)	84, 350
Hsp92II	CATG	7 cut(s)	25, 149, 160, 542, 597, 606, 1110
HspAI	GCGC	1 cut(s)	321
Kzo9I	GATC	4 cut(s)	77, 555, 624, 933
LmnI	GCTCC	2 cut(s)	649, 938
Lsp1109I	GCAGC	2 cut(s)	214, 939
LweI	GCATC	4 cut(s)	20, 447, 689, 831
MaeI	CTAG	3 cut(s)	167, 582, 1095
MaeII	ACGT	2 cut(s)	84, 350
MaeIII	GTNAC	5 cut(s)	35, 531, 651, 827, 1090
MalI	GATC	4 cut(s)	79, 557, 626, 935
MboI	GATC	4 cut(s)	77, 555, 624, 933
MboII	GAAGA	1 cut(s)	684
MhlI	GDGCHC	1 cut(s)	1053
MluCI	AATT	5 cut(s)	216, 383, 573, 609, 1056
MlyI	GAGTC	1 cut(s)	108
MnlI	CCTC	7 cut(s)	19, 21, 98, 186, 467, 495, 978
MseI	TTAA	3 cut(s)	522, 761, 1035
MslI	CAYNNNNRTG	2 cut(s)	273, 878
MspA1I	CMGCKG	1 cut(s)	64
MspI	CCGG	1 cut(s)	553
MspR9I	CCNGG	1 cut(s)	617
MvaI	CCWGG	1 cut(s)	617
MwoI	GCNNNNNNNGC	2 cut(s)	293, 544
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	2 cut(s)	70, 668
NdeII	GATC	4 cut(s)	77, 555, 624, 933
NlaIII	CATG	7 cut(s)	25, 149, 160, 542, 597, 606, 1110
NlaIV	GGNNCC	3 cut(s)	506, 749, 837
NmeAIII	GCCGAG	1 cut(s)	872
NmuCI	GTSAC	1 cut(s)	651
NspI	RCATGY	2 cut(s)	149, 1110
PciI	ACATGT	1 cut(s)	1106
PflMI	CCANNNNNTGG	1 cut(s)	1019
PkrI	GCNGC	3 cut(s)	229, 850, 929
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PscI	ACATGT	1 cut(s)	1106
Psp6I	CCWGG	1 cut(s)	615
PspGI	CCWGG	1 cut(s)	615
PspN4I	GGNNCC	3 cut(s)	506, 749, 837
PspPI	GGNCC	3 cut(s)	170, 504, 836
PvuII	CAGCTG	1 cut(s)	64
RsaI	GTAC	6 cut(s)	54, 60, 281, 400, 427, 1105
RsaNI	GTAC	6 cut(s)	53, 59, 280, 399, 426, 1104
RseI	CAYNNNNRTG	2 cut(s)	273, 878
SaqAI	TTAA	3 cut(s)	522, 761, 1035
SatI	GCNGC	3 cut(s)	228, 849, 928
Sau3AI	GATC	4 cut(s)	77, 555, 624, 933
Sau96I	GGNCC	3 cut(s)	170, 504, 836
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	617
SduI	GDGCHC	1 cut(s)	1053
SfaNI	GCATC	4 cut(s)	20, 447, 689, 831
SinI	GGWCC	2 cut(s)	170, 836
SmiMI	CAYNNNNRTG	2 cut(s)	273, 878
SmlI	CTYRAG	2 cut(s)	188, 740
SmoI	CTYRAG	2 cut(s)	188, 740
SpeI	ACTAGT	1 cut(s)	581
Sse9I	AATT	5 cut(s)	216, 383, 573, 609, 1056
SsiI	CCGC	1 cut(s)	848
SspMI	CTAG	3 cut(s)	167, 582, 1095
StyD4I	CCNGG	1 cut(s)	615
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	968
TaiI	ACGT	2 cut(s)	87, 353
TasI	AATT	5 cut(s)	216, 383, 573, 609, 1056
TatI	WGTACW	2 cut(s)	279, 1103
TauI	GCSGC	1 cut(s)	851
Tru1I	TTAA	3 cut(s)	522, 761, 1035
Tru9I	TTAA	3 cut(s)	522, 761, 1035
TscAI	CASTG	1 cut(s)	532
TseFI	GTSAC	1 cut(s)	651
TseI	GCWGC	2 cut(s)	227, 927
Tsp45I	GTSAC	1 cut(s)	651
TspDTI	ATGAA	2 cut(s)	591, 1101
TspRI	CASTG	1 cut(s)	532
Van91I	CCANNNNNTGG	1 cut(s)	1019
VpaK11BI	GGWCC	2 cut(s)	170, 836
XagI	CCTNNNNNAGG	1 cut(s)	485
XceI	RCATGY	2 cut(s)	149, 1110
XmiI	GTMKAC	1 cut(s)	636
XspI	CTAG	3 cut(s)	167, 582, 1095

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.