Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003064

Physical Location & Seq

Genomic Coordinates Forward (+)

6976447 .. 6978308

Gene Structure 1862 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG092400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGCAGTTACTACTTGGCAATGGTACTGGTCCAGCTAGCATATGGTGGATCAAACTTTCTCTTGCCCAAGGACTCAATCCAATCGTGTTTGTGGTTTATAGGCATGTTATCGCCATGCTTTTGCTAGGACCATTTGCTTATGTTCTTGAGAGGAAGCAGAGACCTTCGCTCTCGGTTTCAATAGCTGCAAAAGTTTTTGTGCTTGCATTATTTGGGACTACTATCCATCTCAATGTGTACTATGCTGGTTTAGCATACATTTCCCCAACATCTGCTTGCGCCCTGAGTAATGTAATCCCAAGTTTGATGTTTTTATTGGCCGTTCTGCTTCGGATGGAGAAATTGCACATTAGAAGTACCAGAAGACACCTATTCAAGGGTTTTGTTGAGAGGCCCCTGATAACTGCATTTAACACTGAGTTACGGCATGGGAAGAAAAACCGGATCAAGGGTTCTGCTCTAATTCTGACTAGTCATATAGCATGGTGTTCATGGCTAATTCTCCAGGCTGTGATCTCCAAAGTCTACCCTGCTCCATTGTCGCTAACCACCATCATATGCTTTTTCGCATCATTGCAATCTTCCTTTCTTGCCTTGTTCTTTGCAAGAAATCCAGCTTCGTGGAGACTTGGGTGGAACCTACAGCTTTTAACCATCATCTACTCTGGAGTTGTGTTGTCAGCATTAGTCTATTACCTGCAACCGTGGTGCATCAGTTACAAGGGATCAGTTTTTGCGGCTATGTTTAGCCCCCTACAAGTCATTATAGTGGCAATGTTCTCGGAAGTTGCTTTTGCAGAGCGACTTCACTTTGGCAGCTTGATCGGAGCATTTCTCATTATCGTTGGCCTTTACTGTGTGCTATGGGGAAAGAGGCAAGATGGTCTTGTTACTGAACCCCCACAGGGTGGAAAAGGAGTACTTAACAATGATAAAGTGCTCGCAATTTCCAAGATTGATATTCAAGTGATACATCCTGTAACTAGAGAAAGTACATGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

334

Amino Acids

37.04

Weight (kDa)

9.93

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	19 - 118	1.4e-11	EamA-like transporter family
EamA	PF00892	150 - 288	4.2e-11	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003064)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10210 FvH4_5g10220
malus_domestica	MD06G1126900.v1.1 MD06G1127200.v1.1 MD14G1142400.v1.1
prunus_persica	Prupe.4G100300_v2.0.a1 Prupe.5G136500_v2.0.a1 Prupe.5G136500_v2.0.a1
pyrus_communis	pycom06g11660 pycom14g11780 pycom14g11810
rosa_chinensis	RchiOBHm_Chr7g0188001 RchiOBHm_Chr7g0188011
rosa_laevigata	RLG00000004733 RLG00000004734 RLG00000004735
rosa_multiflora	Rmu_co8503989.1_g000001 Rmu_sc0003624.1_g000020 Rmu_ssc0000422.1_g000012
rosa_roxburghii	Rroxscaffold_3G00266810 Rroxscaffold_3G00266820
rosa_rugosa	Rorug06G0486700 Rorug06G0486700 Rorug06G0486800 Rorug06G0486900
rosa_samantha	Rh7AG091600 Rh7AG091700 Rh7BG093100 Rh7BG093200 Rh7BG093300 Rh7CG092400 Rh7CG092500 Rh7CG092700 Rh7DG093800 Rh7DG093900
rosa_wichuraiana	Rw7G007900 Rw7G007910 Rw7G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	705
AccB7I	CCANNNNNTGG	1 cut(s)	908
AccI	GTMKAC	1 cut(s)	525
AciI	CCGC	1 cut(s)	737
AclWI	GGATC	3 cut(s)	56, 452, 733
AcoI	YGGCCR	1 cut(s)	318
AdeI	CACNNNGTG	1 cut(s)	908
AfaI	GTAC	5 cut(s)	25, 239, 358, 921, 994
AfiI	CCNNNNNNNGG	4 cut(s)	376, 448, 905, 908
AflIII	ACRYGT	1 cut(s)	995
AgsI	TTSAA	3 cut(s)	180, 376, 965
AhlI	ACTAGT	1 cut(s)	470
AjnI	CCWGG	1 cut(s)	504
AloI	GAACNNNNNNTCC	2 cut(s)	436, 468
AluBI	AGCT	5 cut(s)	35, 185, 617, 646, 819
AluI	AGCT	5 cut(s)	35, 185, 617, 646, 819
Alw21I	GWGCWC	1 cut(s)	942
Alw26I	GTCTC	2 cut(s)	154, 619
AlwI	GGATC	3 cut(s)	56, 452, 733
AoxI	GGCC	3 cut(s)	318, 392, 847
ApeKI	GCWGC	2 cut(s)	185, 816
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	3 cut(s)	29, 128, 393
AsuNHI	GCTAGC	1 cut(s)	35
AvaII	GGWCC	2 cut(s)	29, 128
BbsI	GAAGAC	1 cut(s)	370
Bbv12I	GWGCWC	1 cut(s)	942
BbvI	GCAGC	2 cut(s)	172, 828
BccI	CCATC	5 cut(s)	234, 328, 560, 662, 875
BceAI	ACGGC	2 cut(s)	305, 440
BcgI	CGANNNNNNTGC	4 cut(s)	762, 796, 805, 839
BciT130I	CCWGG	1 cut(s)	506
BcoDI	GTCTC	2 cut(s)	154, 619
BcuI	ACTAGT	1 cut(s)	470
BfaI	CTAG	4 cut(s)	36, 125, 471, 984
BfmI	CTRYAG	1 cut(s)	641
BfuAI	ACCTGC	1 cut(s)	705
BisI	GCNGC	3 cut(s)	186, 738, 817
BlsI	GCNGC	3 cut(s)	187, 739, 818
BmcAI	AGTACT	1 cut(s)	921
Bme1390I	CCNGG	1 cut(s)	506
Bme18I	GGWCC	2 cut(s)	29, 128
BmgT120I	GGNCC	3 cut(s)	29, 128, 393
BmiI	GGNNCC	2 cut(s)	395, 638
BmrFI	CCNGG	1 cut(s)	506
BmsI	GCATC	2 cut(s)	578, 720
BmtI	GCTAGC	1 cut(s)	39
BpiI	GAAGAC	1 cut(s)	370
BplI	GAGNNNNNCTC	2 cut(s)	819, 851
BpmI	CTGGAG	2 cut(s)	488, 687
BpuEI	CTTGAG	1 cut(s)	167
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	2 cut(s)	67, 704
BsaWI	WCCGGW	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	4 cut(s)	376, 448, 905, 908
Bse1I	ACTGG	1 cut(s)	31
Bse3DI	GCAATG	3 cut(s)	25, 572, 780
BseBI	CCWGG	1 cut(s)	506
BseDI	CCNNGG	2 cut(s)	67, 704
BseGI	GGATG	2 cut(s)	339, 973
BseLI	CCNNNNNNNGG	4 cut(s)	376, 448, 905, 908
BseMI	GCAATG	3 cut(s)	25, 572, 780
BseMII	CTCAG	2 cut(s)	275, 408
BseNI	ACTGG	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	172, 828
BshFI	GGCC	3 cut(s)	320, 394, 849
BsiHKAI	GWGCWC	1 cut(s)	942
BsiSI	CCGG	1 cut(s)	442
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	4 cut(s)	376, 448, 905, 908
BsmAI	GTCTC	2 cut(s)	154, 619
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	3 cut(s)	320, 394, 849
Bso31I	GGTCTC	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	942
Bsp143I	GATC	5 cut(s)	48, 444, 513, 725, 822
BspACI	CCGC	1 cut(s)	737
BspANI	GGCC	3 cut(s)	320, 394, 849
BspCNI	CTCAG	2 cut(s)	276, 409
BspLI	GGNNCC	2 cut(s)	395, 638
BspMI	ACCTGC	1 cut(s)	705
BspOI	GCTAGC	1 cut(s)	39
BspPI	GGATC	3 cut(s)	56, 452, 733
BspTNI	GGTCTC	1 cut(s)	154
BsrDI	GCAATG	3 cut(s)	25, 572, 780
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	67, 704
BssMI	GATC	5 cut(s)	48, 444, 513, 725, 822
BssT1I	CCWWGG	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	506
Bst4CI	ACNGT	2 cut(s)	705, 857
BstC8I	GCNNGC	4 cut(s)	37, 204, 277, 942
BstDEI	CTNAG	2 cut(s)	284, 417
BstDSI	CCRYGG	1 cut(s)	704
BstENI	CCTNNNNNAGG	1 cut(s)	374
BstF5I	GGATG	2 cut(s)	339, 973
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	5 cut(s)	51, 447, 516, 728, 825
BstMAI	GTCTC	2 cut(s)	154, 619
BstMBI	GATC	5 cut(s)	48, 444, 513, 725, 822
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstNI	CCWGG	1 cut(s)	506
BstNSI	RCATGY	2 cut(s)	107, 999
BstSCI	CCNGG	1 cut(s)	504
BstSFI	CTRYAG	1 cut(s)	641
BstV1I	GCAGC	2 cut(s)	172, 828
BstV2I	GAAGAC	1 cut(s)	370
BstXI	CCANNNNNNTGG	1 cut(s)	621
BsuRI	GGCC	3 cut(s)	320, 394, 849
BtgI	CCRYGG	1 cut(s)	704
BtsCI	GGATG	2 cut(s)	339, 973
BtsIMutI	CAGTG	1 cut(s)	414
BveI	ACCTGC	1 cut(s)	705
Cac8I	GCNNGC	4 cut(s)	37, 204, 277, 942
CfoI	GCGC	1 cut(s)	281
Cfr13I	GGNCC	3 cut(s)	29, 128, 393
Csp6I	GTAC	5 cut(s)	24, 238, 357, 920, 993
CviAII	CATG	6 cut(s)	104, 115, 428, 483, 492, 996
CviQI	GTAC	5 cut(s)	24, 238, 357, 920, 993
DdeI	CTNAG	2 cut(s)	284, 417
DpnI	GATC	5 cut(s)	50, 446, 515, 727, 824
DpnII	GATC	5 cut(s)	48, 444, 513, 725, 822
DraIII	CACNNNGTG	1 cut(s)	908
EaeI	YGGCCR	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	67
Eco31I	GGTCTC	1 cut(s)	154
Eco47I	GGWCC	2 cut(s)	29, 128
EcoNI	CCTNNNNNAGG	1 cut(s)	374
EcoO109I	RGGNCCY	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	504
EcoT14I	CCWWGG	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	6 cut(s)	107, 118, 431, 486, 495, 999
FalI	AAGNNNNNCTT	4 cut(s)	870, 902, 906, 938
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	6 cut(s)	103, 114, 427, 482, 491, 995
FauNDI	CATATG	2 cut(s)	41, 557
FblI	GTMKAC	1 cut(s)	525
Fnu4HI	GCNGC	3 cut(s)	186, 738, 817
FokI	GGATG	2 cut(s)	346, 960
Fsp4HI	GCNGC	3 cut(s)	186, 738, 817
FspBI	CTAG	4 cut(s)	36, 125, 471, 984
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	3 cut(s)	186, 738, 817
GsuI	CTGGAG	2 cut(s)	488, 687
HaeIII	GGCC	3 cut(s)	320, 394, 849
HapII	CCGG	1 cut(s)	442
HhaI	GCGC	1 cut(s)	281
Hin1II	CATG	6 cut(s)	107, 118, 431, 486, 495, 999
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HinfI	GANTC	1 cut(s)	72
HpaII	CCGG	1 cut(s)	442
Hpy166II	GTNNAC	2 cut(s)	238, 526
Hpy188I	TCNGA	4 cut(s)	333, 468, 784, 827
Hpy188III	TCNNGA	2 cut(s)	146, 666
Hpy8I	GTNNAC	2 cut(s)	238, 526
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	2 cut(s)	705, 857
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	2 cut(s)	284, 417
Hsp92II	CATG	6 cut(s)	107, 118, 431, 486, 495, 999
HspAI	GCGC	1 cut(s)	279
Kzo9I	GATC	5 cut(s)	48, 444, 513, 725, 822
LmnI	GCTCC	2 cut(s)	538, 827
Lsp1109I	GCAGC	2 cut(s)	172, 828
LweI	GCATC	2 cut(s)	578, 720
MaeI	CTAG	4 cut(s)	36, 125, 471, 984
MaeIII	GTNAC	5 cut(s)	6, 420, 716, 889, 979
MalI	GATC	5 cut(s)	50, 446, 515, 727, 824
MboI	GATC	5 cut(s)	48, 444, 513, 725, 822
MboII	GAAGA	3 cut(s)	375, 445, 573
MhlI	GDGCHC	1 cut(s)	942
MluCI	AATT	4 cut(s)	341, 462, 498, 945
MlyI	GAGTC	1 cut(s)	66
MnlI	CCTC	3 cut(s)	144, 384, 867
MseI	TTAA	3 cut(s)	411, 650, 924
MslI	CAYNNNNRTG	2 cut(s)	231, 767
MspI	CCGG	1 cut(s)	442
MspR9I	CCNGG	1 cut(s)	506
MvaI	CCWGG	1 cut(s)	506
MwoI	GCNNNNNNNGC	1 cut(s)	251
NdeI	CATATG	2 cut(s)	41, 557
NdeII	GATC	5 cut(s)	48, 444, 513, 725, 822
NheI	GCTAGC	1 cut(s)	35
NlaIII	CATG	6 cut(s)	107, 118, 431, 486, 495, 999
NlaIV	GGNNCC	2 cut(s)	395, 638
NspI	RCATGY	2 cut(s)	107, 999
PciI	ACATGT	1 cut(s)	995
PflMI	CCANNNNNTGG	1 cut(s)	908
PkrI	GCNGC	3 cut(s)	187, 739, 818
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
PscI	ACATGT	1 cut(s)	995
Psp6I	CCWGG	1 cut(s)	504
PspGI	CCWGG	1 cut(s)	504
PspN4I	GGNNCC	2 cut(s)	395, 638
PspPI	GGNCC	3 cut(s)	29, 128, 393
RsaI	GTAC	5 cut(s)	25, 239, 358, 921, 994
RsaNI	GTAC	5 cut(s)	24, 238, 357, 920, 993
RseI	CAYNNNNRTG	2 cut(s)	231, 767
SaqAI	TTAA	3 cut(s)	411, 650, 924
SatI	GCNGC	3 cut(s)	186, 738, 817
Sau3AI	GATC	5 cut(s)	48, 444, 513, 725, 822
Sau96I	GGNCC	3 cut(s)	29, 128, 393
ScaI	AGTACT	1 cut(s)	921
SchI	GAGTC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	506
SduI	GDGCHC	1 cut(s)	942
SetI	ASST	9 cut(s)	37, 166, 187, 372, 619, 642, 648, 699, 821
SfaNI	GCATC	2 cut(s)	578, 720
SfcI	CTRYAG	1 cut(s)	641
SinI	GGWCC	2 cut(s)	29, 128
SmiMI	CAYNNNNRTG	2 cut(s)	231, 767
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SpeI	ACTAGT	1 cut(s)	470
Sse9I	AATT	4 cut(s)	341, 462, 498, 945
SsiI	CCGC	1 cut(s)	737
SspMI	CTAG	4 cut(s)	36, 125, 471, 984
StyD4I	CCNGG	1 cut(s)	504
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	2 cut(s)	705, 857
TasI	AATT	4 cut(s)	341, 462, 498, 945
TatI	WGTACW	3 cut(s)	237, 919, 992
TauI	GCSGC	1 cut(s)	740
Tru1I	TTAA	3 cut(s)	411, 650, 924
Tru9I	TTAA	3 cut(s)	411, 650, 924
TscAI	CASTG	1 cut(s)	421
TseI	GCWGC	2 cut(s)	185, 816
TspDTI	ATGAA	2 cut(s)	480, 990
TspRI	CASTG	1 cut(s)	421
Van91I	CCANNNNNTGG	1 cut(s)	908
VpaK11BI	GGWCC	2 cut(s)	29, 128
XagI	CCTNNNNNAGG	1 cut(s)	374
XceI	RCATGY	2 cut(s)	107, 999
XcmI	CCANNNNNNNNNTGG	1 cut(s)	39
XmiI	GTMKAC	1 cut(s)	525
XspI	CTAG	4 cut(s)	36, 125, 471, 984
ZrmI	AGTACT	1 cut(s)	921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.