Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003064

Physical Location & Seq

Genomic Coordinates Reverse (-)

61815589 .. 61817496

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004735

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGACCCTCGTATATCCATGGAGGCATGCAGGTACTACTTGGCAATGGTACTGGTCCAGCTAGCATATGGTGGATCAAACGTTCTCATAAAACTCTCTCTTGCACAAGGACTCAATCCTATCGTCTTTGTTGTTTATAGGCATGGTATCGCCATGCTCTTGCTAGGACCATTTGCTTATGTTCTTGAGAGGAAGCAGAGACCTTCGCTCTCAATTTCAATAACTGCAAAAGTTTTTGTGCTTGCATTATTTGGGAAAACTATCCATCTCAATGTGTACTATGCTGGTTTAGCATACATTTCCCCAACATCTGCTTGCGCGCTGAGTAATGTAATCCCAAGTTTGACGTTTTTATTGGCCGTTCTGCTCCGGATGGAGAAATTGAACATTAAAAGTACCAGAAGTCGAGCAAAGGTTGTTGGTACACTTCTCTGCATTGTTGGTTCGCTTATTTTCACTTTCTGGAAAGGAGGACATCTATTCAAGGGTTTTGTTGAGAGGCCCCTGATAACTGCATTTCACACTGAGTTCAGGCATGGTAAGCAAAACCAGATCAAGGGTTCTGCTCTAATTCTGACTAGTCATATAGCATGGTGTTCTTGGCTAATTCTCCAGGCTGTGATCTCTAAAGTTTACCCTGCTCCATTGTCACTAACCACCATCATATGCTTTTTCGCATCATTGCAATCTTCCTTTCTTGCCTTGTTCTTTGCAAGAAATCCAGCTTCATGGAGACTTGAGTGGAACCTGCAACTTTTAACCATCATCTACTCTGGAGTTGTGTTGTCAGCACTAATCTATTACCTGCAAGCATGGTGCATCAGTTACAAGGGACCAGTTTTTGCGGCTATGTTTAGTCCCCTACAAGTCATTATAGTGGCAATGTTCTCCGCAGTTGCTTTTGCAGAGCGACTTCACTTTGGCAGCTTGATCGGAGCATTTCTCATTATCGTTGGCCTTTACTGTGTGCTATGGGGAAAGAAGCAAGATGGTCTTGTTGCTGAACCCCCACAGAATGGAAAAGGAGTACTTAACAATGATAAAGTGCTCGCAATTTCCATGATTGATATTCAAGTGATACATCCTGTAACTAGAGAAAGGACATGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

371

Amino Acids

41.0

Weight (kDa)

9.75

Isoelectric Point (pI)

30.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	13 - 153	3e-14	EamA-like transporter family
EamA	PF00892	186 - 324	1.1e-11	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003064)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10210 FvH4_5g10220
malus_domestica	MD06G1126900.v1.1 MD06G1127200.v1.1 MD14G1142400.v1.1
prunus_persica	Prupe.4G100300_v2.0.a1 Prupe.5G136500_v2.0.a1 Prupe.5G136500_v2.0.a1
pyrus_communis	pycom06g11660 pycom14g11780 pycom14g11810
rosa_chinensis	RchiOBHm_Chr7g0188001 RchiOBHm_Chr7g0188011
rosa_laevigata	RLG00000004733 RLG00000004734 RLG00000004735
rosa_multiflora	Rmu_co8503989.1_g000001 Rmu_sc0003624.1_g000020 Rmu_ssc0000422.1_g000012
rosa_roxburghii	Rroxscaffold_3G00266810 Rroxscaffold_3G00266820
rosa_rugosa	Rorug06G0486700 Rorug06G0486700 Rorug06G0486800 Rorug06G0486900
rosa_samantha	Rh7AG091600 Rh7AG091700 Rh7BG093100 Rh7BG093200 Rh7BG093300 Rh7CG092400 Rh7CG092500 Rh7CG092700 Rh7DG093800 Rh7DG093900
rosa_wichuraiana	Rw7G007900 Rw7G007910 Rw7G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	21, 756, 813
AccB7I	CCANNNNNTGG	1 cut(s)	1016
AccII	CGCG	1 cut(s)	320
AccIII	TCCGGA	1 cut(s)	369
AciI	CCGC	2 cut(s)	845, 891
AclI	AACGTT	1 cut(s)	81
AclWI	GGATC	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	357
AfaI	GTAC	6 cut(s)	35, 51, 278, 397, 424, 1029
AfiI	CCNNNNNNNGG	2 cut(s)	556, 1016
AflIII	ACRYGT	1 cut(s)	1103
AgsI	TTSAA	4 cut(s)	219, 385, 484, 1073
AhlI	ACTAGT	1 cut(s)	578
AjnI	CCWGG	1 cut(s)	612
AloI	GAACNNNNNNTCC	2 cut(s)	66, 98
AluBI	AGCT	3 cut(s)	61, 725, 927
AluI	AGCT	3 cut(s)	61, 725, 927
Alw21I	GWGCWC	1 cut(s)	1050
Alw26I	GTCTC	2 cut(s)	193, 727
AlwI	GGATC	1 cut(s)	82
Aor13HI	TCCGGA	1 cut(s)	369
AoxI	GGCC	3 cut(s)	357, 500, 955
ApeKI	GCWGC	1 cut(s)	924
AspLEI	GCGC	2 cut(s)	320, 322
AspS9I	GGNCC	5 cut(s)	4, 55, 167, 501, 833
AsuNHI	GCTAGC	1 cut(s)	61
AvaII	GGWCC	4 cut(s)	4, 55, 167, 833
Bbv12I	GWGCWC	1 cut(s)	1050
BbvI	GCAGC	1 cut(s)	936
BccI	CCATC	5 cut(s)	273, 367, 668, 770, 983
BceAI	ACGGC	1 cut(s)	344
BcgI	CGANNNNNNTGC	2 cut(s)	913, 947
BciT130I	CCWGG	1 cut(s)	614
BcoDI	GTCTC	2 cut(s)	193, 727
BcuI	ACTAGT	1 cut(s)	578
BfaI	CTAG	4 cut(s)	62, 164, 579, 1092
BfuAI	ACCTGC	3 cut(s)	21, 756, 813
BisI	GCNGC	2 cut(s)	846, 925
BlsI	GCNGC	2 cut(s)	847, 926
BmcAI	AGTACT	1 cut(s)	1029
Bme1390I	CCNGG	1 cut(s)	614
Bme18I	GGWCC	4 cut(s)	4, 55, 167, 833
BmgT120I	GGNCC	5 cut(s)	4, 55, 167, 501, 833
BmiI	GGNNCC	4 cut(s)	6, 503, 746, 834
BmrFI	CCNGG	1 cut(s)	614
BmsI	GCATC	2 cut(s)	686, 828
BmtI	GCTAGC	1 cut(s)	65
BplI	GAGNNNNNCTC	2 cut(s)	927, 959
BpmI	CTGGAG	2 cut(s)	596, 795
BpuEI	CTTGAG	2 cut(s)	206, 758
BsaI	GGTCTC	1 cut(s)	193
BsaJI	CCNNGG	1 cut(s)	18
BsaWI	WCCGGW	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	2 cut(s)	556, 1016
Bse1I	ACTGG	2 cut(s)	57, 836
Bse3DI	GCAATG	3 cut(s)	51, 680, 888
BseAI	TCCGGA	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	614
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	2 cut(s)	378, 1081
BseLI	CCNNNNNNNGG	2 cut(s)	556, 1016
BseMI	GCAATG	3 cut(s)	51, 680, 888
BseMII	CTCAG	2 cut(s)	314, 516
BseNI	ACTGG	2 cut(s)	57, 836
BsePI	GCGCGC	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	936
Bsh1236I	CGCG	1 cut(s)	320
BshFI	GGCC	3 cut(s)	359, 502, 957
BsiHKAI	GWGCWC	1 cut(s)	1050
BsiSI	CCGG	1 cut(s)	370
BslFI	GGGAC	2 cut(s)	843, 846
BslI	CCNNNNNNNGG	2 cut(s)	556, 1016
BsmAI	GTCTC	2 cut(s)	193, 727
BsmFI	GGGAC	2 cut(s)	843, 846
BsnI	GGCC	3 cut(s)	359, 502, 957
Bso31I	GGTCTC	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	1050
Bsp13I	TCCGGA	1 cut(s)	369
Bsp143I	GATC	4 cut(s)	74, 552, 621, 930
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	2 cut(s)	845, 891
BspANI	GGCC	3 cut(s)	359, 502, 957
BspCNI	CTCAG	2 cut(s)	315, 517
BspEI	TCCGGA	1 cut(s)	369
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	4 cut(s)	6, 503, 746, 834
BspMI	ACCTGC	3 cut(s)	21, 756, 813
BspOI	GCTAGC	1 cut(s)	65
BspPI	GGATC	1 cut(s)	82
BspTNI	GGTCTC	1 cut(s)	193
BsrDI	GCAATG	3 cut(s)	51, 680, 888
BsrI	ACTGG	2 cut(s)	57, 836
BssECI	CCNNGG	1 cut(s)	18
BssHII	GCGCGC	1 cut(s)	318
BssMI	GATC	4 cut(s)	74, 552, 621, 930
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	614
Bst4CI	ACNGT	1 cut(s)	965
BstC8I	GCNNGC	7 cut(s)	28, 63, 243, 316, 320, 810, 1050
BstDEI	CTNAG	2 cut(s)	323, 525
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	2 cut(s)	378, 1081
BstFNI	CGCG	1 cut(s)	320
BstHHI	GCGC	2 cut(s)	320, 322
BstKTI	GATC	4 cut(s)	77, 555, 624, 933
BstMAI	GTCTC	2 cut(s)	193, 727
BstMBI	GATC	4 cut(s)	74, 552, 621, 930
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 541
BstNI	CCWGG	1 cut(s)	614
BstNSI	RCATGY	2 cut(s)	30, 1107
BstSCI	CCNGG	1 cut(s)	612
BstUI	CGCG	1 cut(s)	320
BstV1I	GCAGC	1 cut(s)	936
BstXI	CCANNNNNNTGG	1 cut(s)	729
BsuRI	GGCC	3 cut(s)	359, 502, 957
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	2 cut(s)	378, 1081
BtsIMutI	CAGTG	1 cut(s)	522
BveI	ACCTGC	3 cut(s)	21, 756, 813
Cac8I	GCNNGC	7 cut(s)	28, 63, 243, 316, 320, 810, 1050
CfoI	GCGC	2 cut(s)	320, 322
Cfr13I	GGNCC	5 cut(s)	4, 55, 167, 501, 833
Csp6I	GTAC	6 cut(s)	34, 50, 277, 396, 423, 1028
CviJI	RGCY	9 cut(s)	61, 359, 502, 604, 617, 725, 848, 927, 957
CviKI_1	RGCY	9 cut(s)	61, 359, 502, 604, 617, 725, 848, 927, 957
CviQI	GTAC	6 cut(s)	34, 50, 277, 396, 423, 1028
DdeI	CTNAG	2 cut(s)	323, 525
DpnI	GATC	4 cut(s)	76, 554, 623, 932
DpnII	GATC	4 cut(s)	74, 552, 621, 930
EaeI	YGGCCR	1 cut(s)	357
Eco130I	CCWWGG	1 cut(s)	18
Eco31I	GGTCTC	1 cut(s)	193
Eco47I	GGWCC	4 cut(s)	4, 55, 167, 833
EcoO109I	RGGNCCY	1 cut(s)	501
EcoRII	CCWGG	1 cut(s)	612
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
FalI	AAGNNNNNCTT	4 cut(s)	978, 1010, 1014, 1046
FaqI	GGGAC	2 cut(s)	843, 846
FauNDI	CATATG	2 cut(s)	67, 665
Fnu4HI	GCNGC	2 cut(s)	846, 925
FokI	GGATG	2 cut(s)	385, 1068
Fsp4HI	GCNGC	2 cut(s)	846, 925
FspBI	CTAG	4 cut(s)	62, 164, 579, 1092
GlaI	GCGC	2 cut(s)	319, 321
GluI	GCNGC	2 cut(s)	846, 925
GsuI	CTGGAG	2 cut(s)	596, 795
HaeIII	GGCC	3 cut(s)	359, 502, 957
HapII	CCGG	1 cut(s)	370
HhaI	GCGC	2 cut(s)	320, 322
Hin6I	GCGC	2 cut(s)	318, 320
HinP1I	GCGC	2 cut(s)	318, 320
HinfI	GANTC	1 cut(s)	111
HpaII	CCGG	1 cut(s)	370
Hpy166II	GTNNAC	3 cut(s)	277, 425, 634
Hpy188I	TCNGA	2 cut(s)	576, 935
Hpy188III	TCNNGA	4 cut(s)	185, 370, 463, 774
Hpy8I	GTNNAC	3 cut(s)	277, 425, 634
HpyAV	CCTTC	1 cut(s)	213
HpyCH4III	ACNGT	1 cut(s)	965
HpyCH4IV	ACGT	2 cut(s)	81, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 541
HpyF3I	CTNAG	2 cut(s)	323, 525
HpySE526I	ACGT	2 cut(s)	81, 347
HspAI	GCGC	2 cut(s)	318, 320
Kpn2I	TCCGGA	1 cut(s)	369
Kzo9I	GATC	4 cut(s)	74, 552, 621, 930
LmnI	GCTCC	3 cut(s)	372, 646, 935
Lsp1109I	GCAGC	1 cut(s)	936
LweI	GCATC	2 cut(s)	686, 828
MaeI	CTAG	4 cut(s)	62, 164, 579, 1092
MaeII	ACGT	2 cut(s)	81, 347
MaeIII	GTNAC	3 cut(s)	648, 824, 1087
MalI	GATC	4 cut(s)	76, 554, 623, 932
MboI	GATC	4 cut(s)	74, 552, 621, 930
MboII	GAAGA	1 cut(s)	681
MhlI	GDGCHC	1 cut(s)	1050
MluCI	AATT	5 cut(s)	213, 380, 570, 606, 1053
MlyI	GAGTC	1 cut(s)	105
MnlI	CCTC	5 cut(s)	16, 18, 183, 464, 492
MroI	TCCGGA	1 cut(s)	369
MseI	TTAA	3 cut(s)	390, 758, 1032
MslI	CAYNNNNRTG	2 cut(s)	270, 875
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	1 cut(s)	614
MvaI	CCWGG	1 cut(s)	614
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	2 cut(s)	290, 541
NcoI	CCATGG	1 cut(s)	18
NdeI	CATATG	2 cut(s)	67, 665
NdeII	GATC	4 cut(s)	74, 552, 621, 930
NheI	GCTAGC	1 cut(s)	61
NlaIV	GGNNCC	4 cut(s)	6, 503, 746, 834
NmuCI	GTSAC	1 cut(s)	648
NspI	RCATGY	2 cut(s)	30, 1107
PaeI	GCATGC	1 cut(s)	30
PauI	GCGCGC	1 cut(s)	318
PciI	ACATGT	1 cut(s)	1103
PflMI	CCANNNNNTGG	1 cut(s)	1016
PkrI	GCNGC	2 cut(s)	847, 926
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
PscI	ACATGT	1 cut(s)	1103
Psp1406I	AACGTT	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	612
PspGI	CCWGG	1 cut(s)	612
PspN4I	GGNNCC	4 cut(s)	6, 503, 746, 834
PspPI	GGNCC	5 cut(s)	4, 55, 167, 501, 833
PteI	GCGCGC	1 cut(s)	318
RsaI	GTAC	6 cut(s)	35, 51, 278, 397, 424, 1029
RsaNI	GTAC	6 cut(s)	34, 50, 277, 396, 423, 1028
RseI	CAYNNNNRTG	2 cut(s)	270, 875
SaqAI	TTAA	3 cut(s)	390, 758, 1032
SatI	GCNGC	2 cut(s)	846, 925
Sau3AI	GATC	4 cut(s)	74, 552, 621, 930
Sau96I	GGNCC	5 cut(s)	4, 55, 167, 501, 833
ScaI	AGTACT	1 cut(s)	1029
SchI	GAGTC	1 cut(s)	105
ScrFI	CCNGG	1 cut(s)	614
SduI	GDGCHC	1 cut(s)	1050
SfaNI	GCATC	2 cut(s)	686, 828
SinI	GGWCC	4 cut(s)	4, 55, 167, 833
SmiMI	CAYNNNNRTG	2 cut(s)	270, 875
SmlI	CTYRAG	2 cut(s)	185, 737
SmoI	CTYRAG	2 cut(s)	185, 737
SpeI	ACTAGT	1 cut(s)	578
SphI	GCATGC	1 cut(s)	30
Sse9I	AATT	5 cut(s)	213, 380, 570, 606, 1053
SsiI	CCGC	2 cut(s)	845, 891
SspMI	CTAG	4 cut(s)	62, 164, 579, 1092
StyD4I	CCNGG	1 cut(s)	612
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	965
TaiI	ACGT	2 cut(s)	84, 350
TaqI	TCGA	1 cut(s)	406
TasI	AATT	5 cut(s)	213, 380, 570, 606, 1053
TatI	WGTACW	2 cut(s)	276, 1027
TauI	GCSGC	1 cut(s)	848
Tru1I	TTAA	3 cut(s)	390, 758, 1032
Tru9I	TTAA	3 cut(s)	390, 758, 1032
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	1 cut(s)	648
TseI	GCWGC	1 cut(s)	924
Tsp45I	GTSAC	1 cut(s)	648
TspDTI	ATGAA	2 cut(s)	717, 1098
TspRI	CASTG	1 cut(s)	529
Van91I	CCANNNNNTGG	1 cut(s)	1016
VpaK11BI	GGWCC	4 cut(s)	4, 55, 167, 833
XceI	RCATGY	2 cut(s)	30, 1107
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65
XspI	CTAG	4 cut(s)	62, 164, 579, 1092
ZrmI	AGTACT	1 cut(s)	1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.