Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005051

Physical Location & Seq

Genomic Coordinates Reverse (-)

6002654 .. 6004730

Gene Structure 2077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTCTGTTTTCGGTGGATTTTGCGGTGGTATATATGCCGACTTCTTTGGTGATGAATATGGTTTGGCTCTGCCTCTGCCTCCCATGGTTAGGACCAAAAGTTCCAAGGAAAGCACCAAATCCATGAAGGTTCATGACTCAGCCGCAAGTAGTGAAGTTGTGACAGAGAAAAAGAATGCGGGCAACGATTCATCTTCATCAAATGCATTGGCTGCGGAACCTCGACCTGCACTGCGTTTCTCGCCTGCCTTGGATGGATTCAGACACTTCCTGATCATAGCAATCATGAATTCCATGTTCAGTTCTTTCGATGCTTTGTGCGCCGAGGTCTTGGGCCAGACCGTCAAGGCCTCCTTTCCTATTTCGCCGCAGCAGAAGAGCTCTGGTTTTTTCAATAGCTTGAATAAGAAGCAAGATTCTAAGCCAGAAGCCGGACAGGTTAAGAAGCAGGACCAGCAGAAGACGGCACCACCACAACCGCGGCGGTTTGCGGTCGAATTGGATGGTCTCCACTGTTTTGAAACCATCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

19.16

Weight (kDa)

8.43

Isoelectric Point (pI)

57.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32920 AT1G32928
fragaria_vesca	FvH4_5g10560 FvH4_7g32852
prunus_persica	Prupe.5G133000_v2.0.a1 Prupe.5G133100_v2.0.a1 Prupe.5G133200_v2.0.a1
pyrus_communis	pycom06g11340 pycom06g11350 pycom14g11400
rosa_chinensis	RchiOBHm_Chr1g0382811 RchiOBHm_Chr7g0187591
rosa_laevigata	RLG00000004768 RLG00000004769 RLG00000026157
rosa_multiflora	Rmu_sc0002242.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267270 Rroxscaffold_4G00277880
rosa_rugosa	Rorug01G0436400 Rorug06G0482800
rosa_samantha	Rh1AG461400 Rh1CG431900 Rh5AG237600 Rh5DG246100 Rh7AG087800 Rh7BG089000 Rh7BG089100 Rh7CG088200 Rh7CG088400
rosa_wichuraiana	Rw0G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	235
AccB1I	GGYRCC	1 cut(s)	466
AccII	CGCG	1 cut(s)	481
AciI	CCGC	9 cut(s)	24, 144, 179, 215, 368, 479, 481, 484, 491
AcsI	RAATTY	1 cut(s)	289
AfiI	CCNNNNNNNGG	2 cut(s)	90, 431
AgsI	TTSAA	3 cut(s)	394, 403, 521
AloI	GAACNNNNNNTCC	2 cut(s)	85, 117
AluBI	AGCT	2 cut(s)	381, 399
AluI	AGCT	2 cut(s)	381, 399
Alw21I	GWGCWC	1 cut(s)	383
Alw26I	GTCTC	1 cut(s)	512
AoxI	GGCC	2 cut(s)	334, 348
ApeKI	GCWGC	2 cut(s)	212, 370
ApoI	RAATTY	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	323
AspS9I	GGNCC	3 cut(s)	93, 334, 451
AsuHPI	GGTGA	1 cut(s)	62
AvaII	GGWCC	2 cut(s)	93, 451
BanI	GGYRCC	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	467
Bbv12I	GWGCWC	1 cut(s)	383
BbvI	GCAGC	2 cut(s)	199, 382
BccI	CCATC	3 cut(s)	248, 497, 533
BceAI	ACGGC	1 cut(s)	480
BclI	TGATCA	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	512
BfaI	CTAG	1 cut(s)	532
BfuAI	ACCTGC	1 cut(s)	235
BisI	GCNGC	5 cut(s)	144, 213, 368, 371, 482
BlsI	GCNGC	5 cut(s)	145, 214, 369, 372, 483
Bme18I	GGWCC	2 cut(s)	93, 451
BmgT120I	GGNCC	3 cut(s)	93, 334, 451
BmiI	GGNNCC	2 cut(s)	219, 468
BmsI	GCATC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	467
BsaI	GGTCTC	1 cut(s)	512
BsaJI	CCNNGG	5 cut(s)	84, 105, 249, 324, 479
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 431
BseDI	CCNNGG	5 cut(s)	84, 105, 249, 324, 479
BseGI	GGATG	2 cut(s)	259, 508
BseLI	CCNNNNNNNGG	2 cut(s)	90, 431
BseMII	CTCAG	1 cut(s)	153
BseXI	GCAGC	2 cut(s)	199, 382
BsgI	GTGCAG	1 cut(s)	213
Bsh1236I	CGCG	1 cut(s)	481
Bsh1285I	CGRYCG	1 cut(s)	495
BshFI	GGCC	2 cut(s)	336, 350
BshNI	GGYRCC	1 cut(s)	466
BsiEI	CGRYCG	1 cut(s)	495
BsiHKAI	GWGCWC	1 cut(s)	383
BsiSI	CCGG	1 cut(s)	432
BslI	CCNNNNNNNGG	2 cut(s)	90, 431
BsmAI	GTCTC	1 cut(s)	512
BsmI	GAATGC	1 cut(s)	181
BsnI	GGCC	2 cut(s)	336, 350
Bso31I	GGTCTC	1 cut(s)	512
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp143I	GATC	1 cut(s)	273
Bsp19I	CCATGG	1 cut(s)	84
BspACI	CCGC	9 cut(s)	24, 144, 179, 215, 368, 479, 481, 484, 491
BspANI	GGCC	2 cut(s)	336, 350
BspCNI	CTCAG	1 cut(s)	152
BspFNI	CGCG	1 cut(s)	481
BspHI	TCATGA	2 cut(s)	133, 285
BspLI	GGNNCC	2 cut(s)	219, 468
BspMI	ACCTGC	1 cut(s)	235
BspQI	GCTCTTC	1 cut(s)	371
BspT107I	GGYRCC	1 cut(s)	466
BspTNI	GGTCTC	1 cut(s)	512
BssECI	CCNNGG	5 cut(s)	84, 105, 249, 324, 479
BssMI	GATC	1 cut(s)	273
BssT1I	CCWWGG	3 cut(s)	84, 105, 249
Bst4CI	ACNGT	2 cut(s)	343, 515
Bst6I	CTCTTC	1 cut(s)	371
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	181, 246
BstDEI	CTNAG	2 cut(s)	139, 420
BstDSI	CCRYGG	2 cut(s)	84, 479
BstF5I	GGATG	2 cut(s)	259, 508
BstFNI	CGCG	1 cut(s)	481
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	1 cut(s)	276
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	1 cut(s)	273
BstMCI	CGRYCG	1 cut(s)	495
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 241, 320, 454
BstUI	CGCG	1 cut(s)	481
BstV1I	GCAGC	2 cut(s)	199, 382
BstV2I	GAAGAC	1 cut(s)	467
BsuRI	GGCC	2 cut(s)	336, 350
BtgI	CCRYGG	2 cut(s)	84, 479
BtsCI	GGATG	2 cut(s)	259, 508
BtsI	GCAGTG	1 cut(s)	230
BtsIMutI	CAGTG	2 cut(s)	230, 511
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	2 cut(s)	181, 246
CciI	TCATGA	2 cut(s)	133, 285
CfoI	GCGC	1 cut(s)	323
Cfr13I	GGNCC	3 cut(s)	93, 334, 451
Cfr42I	CCGCGG	1 cut(s)	482
CviAII	CATG	5 cut(s)	85, 124, 134, 286, 295
CviJI	RGCY	9 cut(s)	68, 143, 212, 336, 350, 381, 399, 424, 431
CviKI_1	RGCY	9 cut(s)	68, 143, 212, 336, 350, 381, 399, 424, 431
DdeI	CTNAG	2 cut(s)	139, 420
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
Ecl136II	GAGCTC	1 cut(s)	381
Eco130I	CCWWGG	3 cut(s)	84, 105, 249
Eco147I	AGGCCT	1 cut(s)	350
Eco24I	GRGCYC	1 cut(s)	383
Eco31I	GGTCTC	1 cut(s)	512
Eco47I	GGWCC	2 cut(s)	93, 451
Eco53kI	GAGCTC	1 cut(s)	381
EcoICRI	GAGCTC	1 cut(s)	381
EcoRI	GAATTC	1 cut(s)	289
EcoT14I	CCWWGG	3 cut(s)	84, 105, 249
EcoT22I	ATGCAT	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	383
ErhI	CCWWGG	3 cut(s)	84, 105, 249
FaeI	CATG	5 cut(s)	88, 127, 137, 289, 298
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FatI	CATG	5 cut(s)	84, 123, 133, 285, 294
FauI	CCCGC	1 cut(s)	172
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	5 cut(s)	144, 213, 368, 371, 482
FokI	GGATG	2 cut(s)	266, 515
FriOI	GRGCYC	1 cut(s)	383
Fsp4HI	GCNGC	5 cut(s)	144, 213, 368, 371, 482
FspBI	CTAG	1 cut(s)	532
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	5 cut(s)	144, 213, 368, 371, 482
HaeIII	GGCC	2 cut(s)	336, 350
HapII	CCGG	1 cut(s)	432
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	5 cut(s)	88, 127, 137, 289, 298
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HinfI	GANTC	4 cut(s)	137, 188, 258, 416
HpaII	CCGG	1 cut(s)	432
HphI	GGTGA	1 cut(s)	62
Hpy188I	TCNGA	1 cut(s)	263
Hpy188III	TCNNGA	3 cut(s)	134, 271, 286
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	2 cut(s)	343, 515
HpyCH4V	TGCA	2 cut(s)	206, 230
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 241, 320, 454
HpyF3I	CTNAG	2 cut(s)	139, 420
Hsp92II	CATG	5 cut(s)	88, 127, 137, 289, 298
HspAI	GCGC	1 cut(s)	321
Ksp22I	TGATCA	1 cut(s)	273
KspI	CCGCGG	1 cut(s)	482
Kzo9I	GATC	1 cut(s)	273
LguI	GCTCTTC	1 cut(s)	371
Lsp1109I	GCAGC	2 cut(s)	199, 382
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	532
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	1 cut(s)	275
MboI	GATC	1 cut(s)	273
MboII	GAAGA	3 cut(s)	186, 388, 472
MhlI	GDGCHC	1 cut(s)	383
MluCI	AATT	2 cut(s)	289, 497
MlyI	GAGTC	1 cut(s)	131
MnlI	CCTC	5 cut(s)	84, 90, 231, 319, 361
Mph1103I	ATGCAT	1 cut(s)	208
MseI	TTAA	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	481
MspI	CCGG	1 cut(s)	432
Mva1269I	GAATGC	1 cut(s)	181
MvnI	CGCG	1 cut(s)	481
MwoI	GCNNNNNNNGC	4 cut(s)	212, 241, 320, 454
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	1 cut(s)	273
NlaIII	CATG	5 cut(s)	88, 127, 137, 289, 298
NlaIV	GGNNCC	2 cut(s)	219, 468
NmeAIII	GCCGAG	1 cut(s)	349
NmuCI	GTSAC	1 cut(s)	160
NsiI	ATGCAT	1 cut(s)	208
PagI	TCATGA	2 cut(s)	133, 285
PceI	AGGCCT	1 cut(s)	350
PciSI	GCTCTTC	1 cut(s)	371
PctI	GAATGC	1 cut(s)	181
PfeI	GAWTC	3 cut(s)	188, 258, 416
PkrI	GCNGC	5 cut(s)	145, 214, 369, 372, 483
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
Psp124BI	GAGCTC	1 cut(s)	383
PspN4I	GGNNCC	2 cut(s)	219, 468
PspPI	GGNCC	3 cut(s)	93, 334, 451
SacI	GAGCTC	1 cut(s)	383
SacII	CCGCGG	1 cut(s)	482
SapI	GCTCTTC	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	5 cut(s)	144, 213, 368, 371, 482
Sau3AI	GATC	1 cut(s)	273
Sau96I	GGNCC	3 cut(s)	93, 334, 451
SchI	GAGTC	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	383
SetI	ASST	7 cut(s)	132, 223, 229, 330, 383, 401, 441
SfaNI	GCATC	1 cut(s)	301
Sfr303I	CCGCGG	1 cut(s)	482
SgrBI	CCGCGG	1 cut(s)	482
SinI	GGWCC	2 cut(s)	93, 451
Sse9I	AATT	2 cut(s)	289, 497
SseBI	AGGCCT	1 cut(s)	350
SsiI	CCGC	9 cut(s)	24, 144, 179, 215, 368, 479, 481, 484, 491
SspMI	CTAG	1 cut(s)	532
SstI	GAGCTC	1 cut(s)	383
StuI	AGGCCT	1 cut(s)	350
StyI	CCWWGG	3 cut(s)	84, 105, 249
TaaI	ACNGT	2 cut(s)	343, 515
TaqI	TCGA	3 cut(s)	223, 309, 495
TasI	AATT	2 cut(s)	289, 497
TauI	GCSGC	3 cut(s)	146, 370, 484
TfiI	GAWTC	3 cut(s)	188, 258, 416
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	2 cut(s)	237, 518
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	2 cut(s)	212, 370
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	6 cut(s)	69, 122, 140, 180, 186, 302
TspRI	CASTG	2 cut(s)	237, 518
VpaK11BI	GGWCC	2 cut(s)	93, 451
XapI	RAATTY	1 cut(s)	289
XspI	CTAG	1 cut(s)	532
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.