Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005051

Physical Location & Seq

Genomic Coordinates Reverse (-)

62115323 .. 62119791

Gene Structure 4469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004769

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAAACCCGACGGAGCGTCGCCGGATCTCGACCCGAAAAACTCCTATTTTCCTGAGAGAGAAGAGGAGGCGCGACCTGGCGCTCAGTTCCGCGGCCAAGATTCTCTGCCTTGCTGGCGCGTTCTGAGTGGCTCAGGGACTCAGGCCCGTCCGATTTGGAAGGGTAAGTGCATCCGTGATTCCGCGGAGGTGGGGCCCGGAGGGGATGATTGGCGCGTGGGGTTAGCTGCACGGTTAGATGCTTTGATTGGGCCGGAAGATACTGAGCGCTGGGCCCCACTTAGCTGGGAAATGCGGGATTTCAAAATTGTGAAGACAATGTCTGTTTTCAGTGGATTTTGTGATGGGGTATATGCCGACTTCTTTAGCGATGAGTATGGTTTGGCCCTGCCTTTGCCTCTGCCTCCGATAGTTAGGAATGAAAATTCCAATGAAAGCACCAAATCGATGGAGGCTCAAAACTCTGCCACAAGCAATGAAGTTTTGACAAAGAATAAGAATGCAGGCAACGATTCATCTTCATCAAAAACATTGGCTGCAGAACCTCAACATGCACTGCGTATCTCCCCTGCCTTGGATGGAATTTTCTGCTTTGAAACTCTAGTTTTCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

22.39

Weight (kDa)

4.79

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32920 AT1G32928
fragaria_vesca	FvH4_5g10560 FvH4_7g32852
prunus_persica	Prupe.5G133000_v2.0.a1 Prupe.5G133100_v2.0.a1 Prupe.5G133200_v2.0.a1
pyrus_communis	pycom06g11340 pycom06g11350 pycom14g11400
rosa_chinensis	RchiOBHm_Chr1g0382811 RchiOBHm_Chr7g0187591
rosa_laevigata	RLG00000004768 RLG00000004769 RLG00000026157
rosa_multiflora	Rmu_sc0002242.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267270 Rroxscaffold_4G00277880
rosa_rugosa	Rorug01G0436400 Rorug06G0482800
rosa_samantha	Rh1AG461400 Rh1CG431900 Rh5AG237600 Rh5DG246100 Rh7AG087800 Rh7BG089000 Rh7BG089100 Rh7CG088200 Rh7CG088400
rosa_wichuraiana	Rw0G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	73, 93, 120, 185, 216
AciI	CCGC	5 cut(s)	91, 93, 183, 185, 295
AclWI	GGATC	1 cut(s)	33
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	2 cut(s)	424, 582
AfeI	AGCGCT	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	574
AgsI	TTSAA	2 cut(s)	304, 596
AhdI	GACNNNNNGTC	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	2 cut(s)	227, 285
AluI	AGCT	2 cut(s)	227, 285
AlwI	GGATC	1 cut(s)	33
Aor51HI	AGCGCT	1 cut(s)	269
AoxI	GGCC	6 cut(s)	94, 144, 194, 251, 273, 384
ApaI	GGGCCC	2 cut(s)	198, 277
ApeKI	GCWGC	2 cut(s)	227, 536
ApoI	RAATTY	2 cut(s)	424, 582
AspLEI	GCGC	5 cut(s)	73, 83, 120, 216, 270
AspS9I	GGNCC	7 cut(s)	145, 194, 195, 251, 273, 274, 385
AsuC2I	CCSGG	1 cut(s)	198
BaeGI	GKGCMC	2 cut(s)	198, 277
BanII	GRGCYC	2 cut(s)	198, 277
BbsI	GAAGAC	1 cut(s)	320
BbvI	GCAGC	2 cut(s)	214, 523
BccI	CCATC	3 cut(s)	338, 442, 572
BciT130I	CCWGG	1 cut(s)	78
BcnI	CCSGG	1 cut(s)	198
BfaI	CTAG	1 cut(s)	602
BfmI	CTRYAG	1 cut(s)	537
BfoI	RGCGCY	2 cut(s)	84, 271
BglI	GCCNNNNNGGC	1 cut(s)	115
BisI	GCNGC	3 cut(s)	94, 228, 537
BlsI	GCNGC	3 cut(s)	95, 229, 538
Bme1390I	CCNGG	2 cut(s)	78, 198
BmeRI	GACNNNNNGTC	1 cut(s)	16
BmgT120I	GGNCC	7 cut(s)	145, 194, 195, 251, 273, 274, 385
BmiI	GGNNCC	4 cut(s)	195, 196, 275, 276
BmrFI	CCNGG	2 cut(s)	78, 198
BmsI	GCATC	2 cut(s)	180, 229
BpiI	GAAGAC	1 cut(s)	320
Bpu10I	CCTNAGC	1 cut(s)	133
BpuMI	CCSGG	1 cut(s)	198
Bsa29I	ATCGAT	1 cut(s)	446
BsaJI	CCNNGG	3 cut(s)	91, 183, 573
Bsc4I	CCNNNNNNNGG	1 cut(s)	574
Bse3DI	GCAATG	1 cut(s)	481
BseBI	CCWGG	1 cut(s)	78
BseCI	ATCGAT	1 cut(s)	446
BseDI	CCNNGG	3 cut(s)	91, 183, 573
BseGI	GGATG	3 cut(s)	171, 211, 583
BseLI	CCNNNNNNNGG	1 cut(s)	574
BseMI	GCAATG	1 cut(s)	481
BseMII	CTCAG	6 cut(s)	45, 98, 116, 147, 155, 255
BseRI	GAGGAG	1 cut(s)	80
BseSI	GKGCMC	2 cut(s)	198, 277
BseXI	GCAGC	2 cut(s)	214, 523
BseYI	CCCAGC	2 cut(s)	270, 285
BsgI	GTGCAG	1 cut(s)	213
Bsh1236I	CGCG	5 cut(s)	73, 93, 120, 185, 216
BshFI	GGCC	6 cut(s)	96, 146, 196, 253, 275, 386
BshVI	ATCGAT	1 cut(s)	446
BsiSI	CCGG	3 cut(s)	23, 198, 254
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	574
BsmFI	GGGAC	1 cut(s)	151
BsmI	GAATGC	1 cut(s)	505
BsnI	GGCC	6 cut(s)	96, 146, 196, 253, 275, 386
Bsp120I	GGGCCC	2 cut(s)	194, 273
Bsp1286I	GDGCHC	2 cut(s)	198, 277
Bsp143I	GATC	1 cut(s)	25
BspACI	CCGC	5 cut(s)	91, 93, 183, 185, 295
BspANI	GGCC	6 cut(s)	96, 146, 196, 253, 275, 386
BspCNI	CTCAG	6 cut(s)	46, 97, 117, 146, 154, 256
BspDI	ATCGAT	1 cut(s)	446
BspFNI	CGCG	5 cut(s)	73, 93, 120, 185, 216
BspLI	GGNNCC	4 cut(s)	195, 196, 275, 276
BspMAI	CTGCAG	1 cut(s)	541
BspPI	GGATC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	481
BssECI	CCNNGG	3 cut(s)	91, 183, 573
BssMI	GATC	1 cut(s)	25
BssT1I	CCWWGG	1 cut(s)	573
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	234
Bst6I	CTCTTC	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	116, 505
BstDEI	CTNAG	7 cut(s)	54, 84, 125, 133, 141, 264, 281
BstDSI	CCRYGG	2 cut(s)	91, 183
BstF5I	GGATG	3 cut(s)	171, 211, 583
BstFNI	CGCG	5 cut(s)	73, 93, 120, 185, 216
BstH2I	RGCGCY	2 cut(s)	84, 271
BstHHI	GCGC	5 cut(s)	73, 83, 120, 216, 270
BstKTI	GATC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	554
BstSCI	CCNGG	2 cut(s)	76, 196
BstSFI	CTRYAG	1 cut(s)	537
BstSLI	GKGCMC	2 cut(s)	198, 277
BstUI	CGCG	5 cut(s)	73, 93, 120, 185, 216
BstV1I	GCAGC	2 cut(s)	214, 523
BstV2I	GAAGAC	1 cut(s)	320
BstX2I	RGATCY	1 cut(s)	25
BstXI	CCANNNNNNTGG	2 cut(s)	285, 448
BstYI	RGATCY	1 cut(s)	25
Bsu15I	ATCGAT	1 cut(s)	446
BsuRI	GGCC	6 cut(s)	96, 146, 196, 253, 275, 386
BsuTUI	ATCGAT	1 cut(s)	446
BtgI	CCRYGG	2 cut(s)	91, 183
BtgZI	GCGATG	1 cut(s)	384
BtsCI	GGATG	3 cut(s)	171, 211, 583
BtsI	GCAGTG	1 cut(s)	554
BtsIMutI	CAGTG	2 cut(s)	337, 554
Cac8I	GCNNGC	2 cut(s)	116, 505
CfoI	GCGC	5 cut(s)	73, 83, 120, 216, 270
Cfr13I	GGNCC	7 cut(s)	145, 194, 195, 251, 273, 274, 385
Cfr42I	CCGCGG	2 cut(s)	94, 186
ClaI	ATCGAT	1 cut(s)	446
CseI	GACGC	1 cut(s)	6
CviAII	CATG	1 cut(s)	551
DdeI	CTNAG	7 cut(s)	54, 84, 125, 133, 141, 264, 281
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
DriI	GACNNNNNGTC	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	57
Eam1105I	GACNNNNNGTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	573
Eco24I	GRGCYC	2 cut(s)	198, 277
Eco47III	AGCGCT	1 cut(s)	269
EcoO109I	RGGNCCY	2 cut(s)	194, 274
EcoRII	CCWGG	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	573
EcoT38I	GRGCYC	2 cut(s)	198, 277
ErhI	CCWWGG	1 cut(s)	573
FaeI	CATG	1 cut(s)	554
FaiI	YATR	4 cut(s)	352, 354, 378, 552
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	1 cut(s)	550
FauI	CCCGC	1 cut(s)	288
Fnu4HI	GCNGC	3 cut(s)	94, 228, 537
FokI	GGATG	3 cut(s)	158, 218, 590
FriOI	GRGCYC	2 cut(s)	198, 277
Fsp4HI	GCNGC	3 cut(s)	94, 228, 537
FspBI	CTAG	1 cut(s)	602
GlaI	GCGC	5 cut(s)	72, 82, 119, 215, 269
GluI	GCNGC	3 cut(s)	94, 228, 537
GsaI	CCCAGC	2 cut(s)	274, 289
HaeII	RGCGCY	2 cut(s)	84, 271
HaeIII	GGCC	6 cut(s)	96, 146, 196, 253, 275, 386
HapII	CCGG	3 cut(s)	23, 198, 254
HgaI	GACGC	1 cut(s)	6
HhaI	GCGC	5 cut(s)	73, 83, 120, 216, 270
Hin1II	CATG	1 cut(s)	554
Hin6I	GCGC	5 cut(s)	71, 81, 118, 214, 268
HinP1I	GCGC	5 cut(s)	71, 81, 118, 214, 268
HinfI	GANTC	4 cut(s)	101, 139, 179, 512
HpaII	CCGG	3 cut(s)	23, 198, 254
Hpy188I	TCNGA	3 cut(s)	126, 153, 408
Hpy188III	TCNNGA	2 cut(s)	29, 53
Hpy99I	CGWCG	2 cut(s)	14, 22
HpyAV	CCTTC	1 cut(s)	154
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4V	TGCA	5 cut(s)	171, 230, 503, 539, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	7 cut(s)	54, 84, 125, 133, 141, 264, 281
Hsp92II	CATG	1 cut(s)	554
HspAI	GCGC	5 cut(s)	71, 81, 118, 214, 268
KspI	CCGCGG	2 cut(s)	94, 186
Kzo9I	GATC	1 cut(s)	25
LmnI	GCTCC	1 cut(s)	14
Lsp1109I	GCAGC	2 cut(s)	214, 523
LweI	GCATC	2 cut(s)	180, 229
MaeI	CTAG	1 cut(s)	602
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	4 cut(s)	74, 269, 325, 510
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	2 cut(s)	198, 277
MluCI	AATT	3 cut(s)	306, 424, 582
MlyI	GAGTC	1 cut(s)	133
MnlI	CCTC	8 cut(s)	58, 61, 181, 194, 408, 414, 445, 555
MspA1I	CMGCKG	2 cut(s)	93, 185
MspI	CCGG	3 cut(s)	23, 198, 254
MspR9I	CCNGG	2 cut(s)	78, 198
Mva1269I	GAATGC	1 cut(s)	505
MvaI	CCWGG	1 cut(s)	78
MvnI	CGCG	5 cut(s)	73, 93, 120, 185, 216
MwoI	GCNNNNNNNGC	1 cut(s)	115
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	1 cut(s)	554
NlaIV	GGNNCC	4 cut(s)	195, 196, 275, 276
NspI	RCATGY	1 cut(s)	554
PctI	GAATGC	1 cut(s)	505
PfeI	GAWTC	3 cut(s)	101, 179, 512
PflFI	GACNNNGTC	1 cut(s)	319
PkrI	GCNGC	3 cut(s)	95, 229, 538
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	76
PspFI	CCCAGC	2 cut(s)	270, 285
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	4 cut(s)	195, 196, 275, 276
PspOMI	GGGCCC	2 cut(s)	194, 273
PspPI	GGNCC	7 cut(s)	145, 194, 195, 251, 273, 274, 385
PstI	CTGCAG	1 cut(s)	541
PsuI	RGATCY	1 cut(s)	25
PsyI	GACNNNGTC	1 cut(s)	319
SacII	CCGCGG	2 cut(s)	94, 186
SatI	GCNGC	3 cut(s)	94, 228, 537
Sau3AI	GATC	1 cut(s)	25
Sau96I	GGNCC	7 cut(s)	145, 194, 195, 251, 273, 274, 385
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	2 cut(s)	78, 198
SduI	GDGCHC	2 cut(s)	198, 277
SetI	ASST	5 cut(s)	79, 192, 229, 287, 547
SfaNI	GCATC	2 cut(s)	180, 229
SfcI	CTRYAG	1 cut(s)	537
Sfr303I	CCGCGG	2 cut(s)	94, 186
SgrBI	CCGCGG	2 cut(s)	94, 186
Sse9I	AATT	3 cut(s)	306, 424, 582
SsiI	CCGC	5 cut(s)	91, 93, 183, 185, 295
SspMI	CTAG	1 cut(s)	602
StyD4I	CCNGG	2 cut(s)	76, 196
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	1 cut(s)	234
TaqI	TCGA	2 cut(s)	30, 446
TasI	AATT	3 cut(s)	306, 424, 582
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	3 cut(s)	101, 179, 512
TscAI	CASTG	2 cut(s)	337, 561
TseI	GCWGC	2 cut(s)	227, 536
TspDTI	ATGAA	6 cut(s)	17, 435, 447, 492, 504, 510
TspGWI	ACGGA	2 cut(s)	27, 164
TspRI	CASTG	2 cut(s)	337, 561
Tth111I	GACNNNGTC	1 cut(s)	319
XapI	RAATTY	2 cut(s)	424, 582
XceI	RCATGY	1 cut(s)	554
XspI	CTAG	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.