pycom06g11340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0005051
Physical Location & Seq
Forward (+)
16662943 .. 16663200
258 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g11340.1

Sequence Viewer

Length: 258 bp
ATGAATTCCATGTTCAGTTCGTTCGATGCCTTGTGTGCTGAGTTCTTGGGCCAGACGGTGAAGTCCTCCTTCCCGAAAAACCAGCTGAAGAGTACTGCCGCAGTTCCATCAAGTAACACGGTTAATACAGCAAAGCAAGAGGGAAATATGGAGTCCCCGCCGGAGGCTCGTGTGAAGAAGCAGAGCCGGAGGACGCCGCCGCGGTTCGCTGTGGAGCTGGACGGGCTCAATTGCTTTGAGACCCTGATCTCTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.36

Weight (kDa)

9.18

Isoelectric Point (pI)

56.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 61
AccII CGCG 1 cut(s) 202
AciI CCGC 5 cut(s) 99, 158, 197, 200, 202
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 194
AfaI GTAC 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 163
AluBI AGCT 2 cut(s) 85, 217
AluI AGCT 2 cut(s) 85, 217
Alw26I GTCTC 1 cut(s) 233
AoxI GGCC 1 cut(s) 49
ApoI RAATTY 1 cut(s) 4
AspS9I GGNCC 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 70
BanII GRGCYC 1 cut(s) 228
BauI CACGAG 1 cut(s) 168
BccI CCATC 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 233
BisI GCNGC 3 cut(s) 99, 197, 200
BlsI GCNGC 3 cut(s) 100, 198, 201
BmcAI AGTACT 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 49
BmsI GCATC 1 cut(s) 16
BsaHI GRCGYC 1 cut(s) 194
BsaI GGTCTC 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 200
Bsc4I CCNNNNNNNGG 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 200
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 30
Bsh1236I CGCG 1 cut(s) 202
BshFI GGCC 1 cut(s) 51
BsiSI CCGG 2 cut(s) 161, 187
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 1 cut(s) 51
Bso31I GGTCTC 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 1 cut(s) 246
BspACI CCGC 5 cut(s) 99, 158, 197, 200, 202
BspANI GGCC 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 31
BspFNI CGCG 1 cut(s) 202
BspTNI GGTCTC 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 1 cut(s) 246
BssNI GRCGYC 1 cut(s) 194
BssSI CACGAG 1 cut(s) 168
Bst2BI CACGAG 1 cut(s) 168
Bst4CI ACNGT 2 cut(s) 58, 121
Bst6I CTCTTC 1 cut(s) 83
BstACI GRCGYC 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 39
BstDSI CCRYGG 1 cut(s) 200
BstFNI CGCG 1 cut(s) 202
BstKTI GATC 1 cut(s) 249
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 1 cut(s) 246
BstMWI GCNNNNNNNGC 2 cut(s) 35, 223
BstUI CGCG 1 cut(s) 202
BsuRI GGCC 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 49
Cfr42I CCGCGG 1 cut(s) 203
CseI GACGC 1 cut(s) 202
Csp6I GTAC 1 cut(s) 93
CviAII CATG 1 cut(s) 10
CviJI RGCY 6 cut(s) 51, 85, 167, 186, 217, 226
CviKI_1 RGCY 6 cut(s) 51, 85, 167, 186, 217, 226
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 1 cut(s) 39
DpnI GATC 1 cut(s) 248
DpnII GATC 1 cut(s) 246
DrdI GACNNNNNNGTC 1 cut(s) 61
DseDI GACNNNNNNGTC 1 cut(s) 61
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Eco24I GRGCYC 1 cut(s) 228
Eco31I GGTCTC 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 107
EcoRI GAATTC 1 cut(s) 4
EcoT38I GRGCYC 1 cut(s) 228
FaeI CATG 1 cut(s) 13
FaiI YATR 2 cut(s) 11, 149
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FaqI GGGAC 1 cut(s) 139
FatI CATG 1 cut(s) 9
FauI CCCGC 1 cut(s) 165
Fnu4HI GCNGC 3 cut(s) 99, 197, 200
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 3 cut(s) 99, 197, 200
GluI GCNGC 3 cut(s) 99, 197, 200
HaeIII GGCC 1 cut(s) 51
HapII CCGG 2 cut(s) 161, 187
HgaI GACGC 1 cut(s) 202
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 1 cut(s) 13
HinfI GANTC 1 cut(s) 152
HpaII CCGG 2 cut(s) 161, 187
HphI GGTGA 1 cut(s) 70
Hpy188III TCNNGA 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 2 cut(s) 58, 121
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 223
HpyF3I CTNAG 1 cut(s) 39
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 1 cut(s) 13
KspI CCGCGG 1 cut(s) 203
Kzo9I GATC 1 cut(s) 246
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 5 cut(s) 65, 95, 174, 200, 203
LweI GCATC 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 113
MalI GATC 1 cut(s) 248
MboI GATC 1 cut(s) 246
MboII GAAGA 2 cut(s) 100, 187
MfeI CAATTG 1 cut(s) 229
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 2 cut(s) 4, 229
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 4 cut(s) 76, 133, 157, 183
MseI TTAA 2 cut(s) 123, 256
MspA1I CMGCKG 2 cut(s) 85, 202
MspI CCGG 2 cut(s) 161, 187
MunI CAATTG 1 cut(s) 229
MvnI CGCG 1 cut(s) 202
MwoI GCNNNNNNNGC 2 cut(s) 35, 223
NdeII GATC 1 cut(s) 246
NlaIII CATG 1 cut(s) 13
PkrI GCNGC 3 cut(s) 100, 198, 201
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
PspPI GGNCC 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 85
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
SacII CCGCGG 1 cut(s) 203
SaqAI TTAA 2 cut(s) 123, 256
SatI GCNGC 3 cut(s) 99, 197, 200
Sau3AI GATC 1 cut(s) 246
Sau96I GGNCC 1 cut(s) 49
ScaI AGTACT 1 cut(s) 94
SchI GAGTC 1 cut(s) 161
SduI GDGCHC 1 cut(s) 228
SetI ASST 2 cut(s) 87, 219
SfaNI GCATC 1 cut(s) 16
Sfr303I CCGCGG 1 cut(s) 203
SgrBI CCGCGG 1 cut(s) 203
Sse9I AATT 2 cut(s) 4, 229
SsiI CCGC 5 cut(s) 99, 158, 197, 200, 202
TaaI ACNGT 2 cut(s) 58, 121
TaqI TCGA 1 cut(s) 24
TasI AATT 2 cut(s) 4, 229
TatI WGTACW 1 cut(s) 92
TauI GCSGC 3 cut(s) 101, 199, 202
Tru1I TTAA 2 cut(s) 123, 256
Tru9I TTAA 2 cut(s) 123, 256
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 4
ZrmI AGTACT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.