Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005051

Physical Location & Seq

Genomic Coordinates Forward (+)

7380154 .. 7380923

Gene Structure 770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16746

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAATGCACATACATACTTGGTCTCTTACTTGTCTGGAAAGGTCCAATCGAGCTGGAATTTAGTCGTCTATACGCGGTAAGTCCAGAGCATCCTAGCTATTTCTTCTCATCCCAATCCAACTCCAACAAGGAACACCTTTCTCCCTCTCGAAGTTTCCTTTCCCACCACTATATATTCAACCCTTCTTCCCCGATTCTCTCACAAATCAAATCAAAACATCTAAACCCAAATACCAACTACCTCTCGATCTCTCTGTTTTCTCTCTCTGAGTTCTTGAAATCCAAGAATTGGGTTTTCGTTTTTTGGTGCAGTAAACGTTTCAAGCAAGCAATCAATCAATCAATCATGAATTCCATGTTCAGTTCTTTCGATGCTTTGTGCGCCGAGTTCTTGGGTCAAACTGTCAAGGCCTCCTTCCCTGTTTCCCAGCAGCAGAAGAGTACTACTAGCGTGTTGAGTAACTTGAATAAGAAGCAAGAGTCTTTGCCAGAAGCCGGCCAGGTTAAGAAGCAGGAGCAGCAGAAGACGGCACCACCACCACCGCGGCGGTTTGCGGTCGAGTTGGATGGACTCCACTGTTTTGAAACCCTCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

22.69

Weight (kDa)

9.18

Isoelectric Point (pI)

65.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32920 AT1G32928
fragaria_vesca	FvH4_5g10560 FvH4_7g32852
prunus_persica	Prupe.5G133000_v2.0.a1 Prupe.5G133100_v2.0.a1 Prupe.5G133200_v2.0.a1
pyrus_communis	pycom06g11340 pycom06g11350 pycom14g11400
rosa_chinensis	RchiOBHm_Chr1g0382811 RchiOBHm_Chr7g0187591
rosa_laevigata	RLG00000004768 RLG00000004769 RLG00000026157
rosa_multiflora	Rmu_sc0002242.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267270 Rroxscaffold_4G00277880
rosa_rugosa	Rorug01G0436400 Rorug06G0482800
rosa_samantha	Rh1AG461400 Rh1CG431900 Rh5AG237600 Rh5DG246100 Rh7AG087800 Rh7BG089000 Rh7BG089100 Rh7CG088200 Rh7CG088400
rosa_wichuraiana	Rw0G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	532
AccB7I	CCANNNNNTGG	1 cut(s)	291
AccII	CGCG	2 cut(s)	77, 547
AciI	CCGC	5 cut(s)	77, 545, 547, 550, 557
AclI	AACGTT	1 cut(s)	319
AcoI	YGGCCR	1 cut(s)	499
AcsI	RAATTY	2 cut(s)	59, 352
AfaI	GTAC	1 cut(s)	445
AfiI	CCNNNNNNNGG	2 cut(s)	291, 497
AgsI	TTSAA	5 cut(s)	181, 280, 325, 469, 587
AjnI	CCWGG	1 cut(s)	501
AluBI	AGCT	2 cut(s)	55, 99
AluI	AGCT	2 cut(s)	55, 99
Alw26I	GTCTC	1 cut(s)	29
AoxI	GGCC	2 cut(s)	411, 499
ApeKI	GCWGC	2 cut(s)	433, 520
ApoI	RAATTY	2 cut(s)	59, 352
AspLEI	GCGC	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	532
BbsI	GAAGAC	1 cut(s)	533
BbvI	GCAGC	2 cut(s)	445, 532
BccI	CCATC	1 cut(s)	563
BceAI	ACGGC	1 cut(s)	546
BciT130I	CCWGG	1 cut(s)	503
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	3 cut(s)	96, 450, 598
BisI	GCNGC	3 cut(s)	434, 521, 548
BlsI	GCNGC	3 cut(s)	435, 522, 549
BmcAI	AGTACT	1 cut(s)	445
Bme1390I	CCNGG	1 cut(s)	503
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	534
BmrFI	CCNGG	1 cut(s)	503
BmsI	GCATC	2 cut(s)	100, 364
BpiI	GAAGAC	1 cut(s)	533
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	545
Bsc4I	CCNNNNNNNGG	2 cut(s)	291, 497
Bse118I	RCCGGY	1 cut(s)	497
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	1 cut(s)	545
BseGI	GGATG	3 cut(s)	91, 110, 574
BseLI	CCNNNNNNNGG	2 cut(s)	291, 497
BseMII	CTCAG	1 cut(s)	261
BseXI	GCAGC	2 cut(s)	445, 532
BseYI	CCCAGC	1 cut(s)	429
BsgI	GTGCAG	1 cut(s)	331
Bsh1236I	CGCG	2 cut(s)	77, 547
Bsh1285I	CGRYCG	1 cut(s)	561
BshFI	GGCC	2 cut(s)	413, 501
BshNI	GGYRCC	1 cut(s)	532
BsiEI	CGRYCG	1 cut(s)	561
BsiSI	CCGG	1 cut(s)	498
BslI	CCNNNNNNNGG	2 cut(s)	291, 497
BsmAI	GTCTC	1 cut(s)	29
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	2 cut(s)	413, 501
Bso31I	GGTCTC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	249
BspACI	CCGC	5 cut(s)	77, 545, 547, 550, 557
BspANI	GGCC	2 cut(s)	413, 501
BspCNI	CTCAG	1 cut(s)	262
BspFNI	CGCG	2 cut(s)	77, 547
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	534
BspT107I	GGYRCC	1 cut(s)	532
BspTNI	GGTCTC	1 cut(s)	29
BsrFI	RCCGGY	1 cut(s)	497
BssAI	RCCGGY	1 cut(s)	497
BssECI	CCNNGG	1 cut(s)	545
BssMI	GATC	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	2 cut(s)	406, 581
Bst6I	CTCTTC	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	330, 499
BstDEI	CTNAG	1 cut(s)	270
BstDSI	CCRYGG	1 cut(s)	545
BstF5I	GGATG	3 cut(s)	91, 110, 574
BstFNI	CGCG	2 cut(s)	77, 547
BstHHI	GCGC	1 cut(s)	386
BstKTI	GATC	1 cut(s)	252
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	249
BstMCI	CGRYCG	1 cut(s)	561
BstMWI	GCNNNNNNNGC	2 cut(s)	383, 520
BstNI	CCWGG	1 cut(s)	503
BstSCI	CCNGG	1 cut(s)	501
BstUI	CGCG	2 cut(s)	77, 547
BstV1I	GCAGC	2 cut(s)	445, 532
BstV2I	GAAGAC	1 cut(s)	533
BsuRI	GGCC	2 cut(s)	413, 501
BtgI	CCRYGG	1 cut(s)	545
BtsCI	GGATG	3 cut(s)	91, 110, 574
BtsIMutI	CAGTG	1 cut(s)	577
Cac8I	GCNNGC	2 cut(s)	330, 499
CciI	TCATGA	1 cut(s)	348
CfoI	GCGC	1 cut(s)	386
Cfr10I	RCCGGY	1 cut(s)	497
Cfr13I	GGNCC	1 cut(s)	44
Cfr42I	CCGCGG	1 cut(s)	548
Csp6I	GTAC	1 cut(s)	444
CviAII	CATG	2 cut(s)	349, 358
CviJI	RGCY	5 cut(s)	55, 99, 413, 497, 501
CviKI_1	RGCY	5 cut(s)	55, 99, 413, 497, 501
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
EaeI	YGGCCR	1 cut(s)	499
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Eco147I	AGGCCT	1 cut(s)	413
Eco31I	GGTCTC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	501
FaeI	CATG	2 cut(s)	352, 361
FaiI	YATR	7 cut(s)	13, 17, 73, 174, 176, 350, 359
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FatI	CATG	2 cut(s)	348, 357
Fnu4HI	GCNGC	3 cut(s)	434, 521, 548
FokI	GGATG	3 cut(s)	78, 97, 581
Fsp4HI	GCNGC	3 cut(s)	434, 521, 548
FspBI	CTAG	3 cut(s)	96, 450, 598
GlaI	GCGC	1 cut(s)	385
GluI	GCNGC	3 cut(s)	434, 521, 548
GsaI	CCCAGC	1 cut(s)	433
HaeIII	GGCC	2 cut(s)	413, 501
HapII	CCGG	1 cut(s)	498
HhaI	GCGC	1 cut(s)	386
Hin1II	CATG	2 cut(s)	352, 361
Hin6I	GCGC	1 cut(s)	384
HinP1I	GCGC	1 cut(s)	384
HinfI	GANTC	3 cut(s)	196, 482, 573
HpaII	CCGG	1 cut(s)	498
Hpy166II	GTNNAC	1 cut(s)	317
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	6 cut(s)	37, 86, 150, 247, 277, 349
Hpy8I	GTNNAC	1 cut(s)	317
HpyAV	CCTTC	2 cut(s)	195, 427
HpyCH4III	ACNGT	2 cut(s)	406, 581
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	2 cut(s)	9, 312
HpyF10VI	GCNNNNNNNGC	2 cut(s)	383, 520
HpyF3I	CTNAG	1 cut(s)	270
HpySE526I	ACGT	1 cut(s)	319
Hsp92II	CATG	2 cut(s)	352, 361
HspAI	GCGC	1 cut(s)	384
KroI	GCCGGC	1 cut(s)	497
KroNI	GCCGGC	1 cut(s)	499
KspI	CCGCGG	1 cut(s)	548
Kzo9I	GATC	1 cut(s)	249
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	2 cut(s)	445, 532
LweI	GCATC	2 cut(s)	100, 364
MaeI	CTAG	3 cut(s)	96, 450, 598
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	1 cut(s)	251
MboI	GATC	1 cut(s)	249
MboII	GAAGA	4 cut(s)	97, 180, 451, 538
MluCI	AATT	3 cut(s)	59, 289, 352
MlyI	GAGTC	2 cut(s)	491, 567
MmeI	TCCRAC	3 cut(s)	144, 150, 546
MnlI	CCTC	3 cut(s)	157, 254, 424
MroNI	GCCGGC	1 cut(s)	497
MseI	TTAA	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	547
MspI	CCGG	1 cut(s)	498
MspR9I	CCNGG	1 cut(s)	503
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	503
MvnI	CGCG	2 cut(s)	77, 547
MwoI	GCNNNNNNNGC	2 cut(s)	383, 520
NaeI	GCCGGC	1 cut(s)	499
NdeII	GATC	1 cut(s)	249
NgoMIV	GCCGGC	1 cut(s)	497
NlaIII	CATG	2 cut(s)	352, 361
NlaIV	GGNNCC	1 cut(s)	534
NmeAIII	GCCGAG	1 cut(s)	412
PagI	TCATGA	1 cut(s)	348
PceI	AGGCCT	1 cut(s)	413
PctI	GAATGC	1 cut(s)	11
PdiI	GCCGGC	1 cut(s)	499
PfeI	GAWTC	1 cut(s)	196
PflMI	CCANNNNNTGG	1 cut(s)	291
PkrI	GCNGC	3 cut(s)	435, 522, 549
PleI	GAGTC	2 cut(s)	490, 567
PpsI	GAGTC	2 cut(s)	490, 567
Psp1406I	AACGTT	1 cut(s)	319
Psp6I	CCWGG	1 cut(s)	501
PspFI	CCCAGC	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	1 cut(s)	534
PspPI	GGNCC	1 cut(s)	44
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
SacII	CCGCGG	1 cut(s)	548
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	3 cut(s)	434, 521, 548
Sau3AI	GATC	1 cut(s)	249
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	1 cut(s)	445
SchI	GAGTC	2 cut(s)	491, 567
ScrFI	CCNGG	1 cut(s)	503
SetI	ASST	7 cut(s)	46, 57, 101, 141, 246, 322, 507
SfaNI	GCATC	2 cut(s)	100, 364
Sfr303I	CCGCGG	1 cut(s)	548
SgrBI	CCGCGG	1 cut(s)	548
SinI	GGWCC	1 cut(s)	44
Sse9I	AATT	3 cut(s)	59, 289, 352
SseBI	AGGCCT	1 cut(s)	413
SsiI	CCGC	5 cut(s)	77, 545, 547, 550, 557
SspMI	CTAG	3 cut(s)	96, 450, 598
StuI	AGGCCT	1 cut(s)	413
StyD4I	CCNGG	1 cut(s)	501
TaaI	ACNGT	2 cut(s)	406, 581
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	5 cut(s)	51, 151, 248, 372, 561
TasI	AATT	3 cut(s)	59, 289, 352
TatI	WGTACW	1 cut(s)	443
TauI	GCSGC	1 cut(s)	550
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	1 cut(s)	584
TseI	GCWGC	2 cut(s)	433, 520
TspDTI	ATGAA	1 cut(s)	365
TspRI	CASTG	1 cut(s)	584
Van91I	CCANNNNNTGG	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	2 cut(s)	59, 352
XspI	CTAG	3 cut(s)	96, 450, 598
ZrmI	AGTACT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.