Prupe.5G133100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0005051
Physical Location & Seq
Forward (+)
12757425 .. 12759464
2040 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G133100.1

Sequence Viewer

Length: 273 bp
ATGAATTCCATGTTCAGTTCGTTTGATGCTTTGTGCGCTGAGTTTCTGGGCCAAAAGGTGAAGGCCTCCTTCCCTACCCAGCAGCAGCAGAAGAGTACTGGGGCTGTGGTGAAAAACAAGGCCTCAGTTTCAGATAATTTGAACAACAGGGAGGAGGCCTCCTTGCCTCAGCAAGCTCAGCCTGTGAAGAAGCAGCAGAGCCAGAAGGCACCGCCACGGTTCGCGCTAGAGTTAGATGGGCTCAACTGCTTTGAGACCCTCGTCTATCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.0

Weight (kDa)

9.06

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 208
AccII CGCG 1 cut(s) 224
AciI CCGC 1 cut(s) 212
AcsI RAATTY 1 cut(s) 4
AfaI GTAC 1 cut(s) 97
AgsI TTSAA 1 cut(s) 142
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw26I GTCTC 1 cut(s) 248
AoxI GGCC 4 cut(s) 49, 63, 120, 156
ApeKI GCWGC 3 cut(s) 82, 85, 193
ApoI RAATTY 1 cut(s) 4
AspLEI GCGC 2 cut(s) 38, 226
AspS9I GGNCC 1 cut(s) 49
AsuHPI GGTGA 2 cut(s) 70, 121
BanI GGYRCC 1 cut(s) 208
BanII GRGCYC 1 cut(s) 243
BbvCI CCTCAGC 1 cut(s) 168
BbvI GCAGC 3 cut(s) 94, 97, 205
BccI CCATC 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 1 cut(s) 227
BisI GCNGC 3 cut(s) 83, 86, 194
BlpI GCTNAGC 1 cut(s) 177
BlsI GCNGC 3 cut(s) 84, 87, 195
BmcAI AGTACT 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 210
BmrI ACTGGG 1 cut(s) 108
BmsI GCATC 1 cut(s) 16
BmuI ACTGGG 1 cut(s) 108
BoxI GACNNNNGTC 1 cut(s) 260
BplI GAGNNNNNCTC 2 cut(s) 143, 175
Bpu10I CCTNAGC 1 cut(s) 168
Bpu1102I GCTNAGC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 215
BseMII CTCAG 4 cut(s) 30, 138, 182, 191
BseNI ACTGG 1 cut(s) 103
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 3 cut(s) 94, 97, 205
BseYI CCCAGC 1 cut(s) 78
Bsh1236I CGCG 1 cut(s) 224
BshFI GGCC 4 cut(s) 51, 65, 122, 158
BshNI GGYRCC 1 cut(s) 208
BsmAI GTCTC 1 cut(s) 248
BsnI GGCC 4 cut(s) 51, 65, 122, 158
Bso31I GGTCTC 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 243
Bsp1720I GCTNAGC 1 cut(s) 177
BspACI CCGC 1 cut(s) 212
BspANI GGCC 4 cut(s) 51, 65, 122, 158
BspCNI CTCAG 4 cut(s) 31, 137, 181, 190
BspFNI CGCG 1 cut(s) 224
BspLI GGNNCC 1 cut(s) 210
BspT107I GGYRCC 1 cut(s) 208
BspTNI GGTCTC 1 cut(s) 248
BsrI ACTGG 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 219
Bst6I CTCTTC 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 4 cut(s) 39, 124, 168, 177
BstDSI CCRYGG 1 cut(s) 215
BstFNI CGCG 1 cut(s) 224
BstHHI GCGC 2 cut(s) 38, 226
BstMAI GTCTC 1 cut(s) 248
BstMWI GCNNNNNNNGC 2 cut(s) 35, 178
BstPAI GACNNNNGTC 1 cut(s) 260
BstUI CGCG 1 cut(s) 224
BstV1I GCAGC 3 cut(s) 94, 97, 205
BsuRI GGCC 4 cut(s) 51, 65, 122, 158
BtgI CCRYGG 1 cut(s) 215
Cac8I GCNNGC 1 cut(s) 174
CfoI GCGC 2 cut(s) 38, 226
Cfr13I GGNCC 1 cut(s) 49
Csp6I GTAC 1 cut(s) 96
CviAII CATG 1 cut(s) 10
CviJI RGCY 9 cut(s) 51, 65, 104, 122, 158, 176, 181, 201, 241
CviKI_1 RGCY 9 cut(s) 51, 65, 104, 122, 158, 176, 181, 201, 241
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 4 cut(s) 39, 124, 168, 177
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Eco147I AGGCCT 3 cut(s) 65, 122, 158
Eco24I GRGCYC 1 cut(s) 243
Eco31I GGTCTC 1 cut(s) 248
EcoRI GAATTC 1 cut(s) 4
EcoT38I GRGCYC 1 cut(s) 243
FaeI CATG 1 cut(s) 13
FaiI YATR 1 cut(s) 11
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FatI CATG 1 cut(s) 9
Fnu4HI GCNGC 3 cut(s) 83, 86, 194
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 3 cut(s) 83, 86, 194
FspBI CTAG 1 cut(s) 227
GlaI GCGC 2 cut(s) 37, 225
GluI GCNGC 3 cut(s) 83, 86, 194
GsaI CCCAGC 1 cut(s) 82
HaeIII GGCC 4 cut(s) 51, 65, 122, 158
HhaI GCGC 2 cut(s) 38, 226
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 2 cut(s) 36, 224
HinP1I GCGC 2 cut(s) 36, 224
HphI GGTGA 2 cut(s) 70, 121
Hpy188I TCNGA 1 cut(s) 133
HpyAV CCTTC 3 cut(s) 55, 79, 199
HpyCH4III ACNGT 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 178
HpyF3I CTNAG 4 cut(s) 39, 124, 168, 177
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 2 cut(s) 36, 224
LpnPI CCDG 6 cut(s) 32, 84, 92, 133, 195, 215
Lsp1109I GCAGC 3 cut(s) 94, 97, 205
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 227
MboII GAAGA 2 cut(s) 103, 199
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 2 cut(s) 4, 136
MnlI CCTC 7 cut(s) 76, 133, 145, 148, 169, 177, 269
MseI TTAA 1 cut(s) 271
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 35, 178
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 1 cut(s) 210
PceI AGGCCT 3 cut(s) 65, 122, 158
PkrI GCNGC 3 cut(s) 84, 87, 195
PshAI GACNNNNGTC 1 cut(s) 260
PspFI CCCAGC 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 210
PspPI GGNCC 1 cut(s) 49
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
SaqAI TTAA 1 cut(s) 271
SatI GCNGC 3 cut(s) 83, 86, 194
Sau96I GGNCC 1 cut(s) 49
ScaI AGTACT 1 cut(s) 97
SduI GDGCHC 1 cut(s) 243
SetI ASST 2 cut(s) 60, 178
SfaNI GCATC 1 cut(s) 16
Sse9I AATT 2 cut(s) 4, 136
SseBI AGGCCT 3 cut(s) 65, 122, 158
SsiI CCGC 1 cut(s) 212
SspMI CTAG 1 cut(s) 227
StuI AGGCCT 3 cut(s) 65, 122, 158
TaaI ACNGT 1 cut(s) 219
TasI AATT 2 cut(s) 4, 136
TatI WGTACW 1 cut(s) 95
Tru1I TTAA 1 cut(s) 271
Tru9I TTAA 1 cut(s) 271
TseI GCWGC 3 cut(s) 82, 85, 193
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 4
XspI CTAG 1 cut(s) 227
ZrmI AGTACT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.