Rroxscaffold_4G00277880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0005051
Physical Location & Seq
Reverse (-)
1102479 .. 1103440
962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00277880.1

Sequence Viewer

Length: 225 bp
ATGTTCTCCTCGGATACAATCCGGAAGCCAATGAGCTTCATAAAAAACGACAAGGAAAAACAGAAGGTGGCCGGTGAAATTGCTTCTTCATCATCGGCGGTGACGGCCAATAGTAAACATGGAGAGAAGCAGCAGCAGCTAGAGAGCAAGAGTATGATGCCATTGCCAAGGTTTGCGCCGGAGATCGATGGGGTTCACTGTTTCGAAACCATTGTTCTTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.24

Weight (kDa)

7.92

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 21
AciI CCGC 1 cut(s) 98
AcoI YGGCCR 2 cut(s) 69, 105
AluBI AGCT 2 cut(s) 36, 139
AluI AGCT 2 cut(s) 36, 139
Aor13HI TCCGGA 1 cut(s) 21
AoxI GGCC 2 cut(s) 69, 105
ApeKI GCWGC 3 cut(s) 130, 133, 136
AspLEI GCGC 1 cut(s) 178
AsuHPI GGTGA 2 cut(s) 86, 112
AsuII TTCGAA 1 cut(s) 204
BbvI GCAGC 3 cut(s) 142, 145, 148
BccI CCATC 1 cut(s) 182
BceAI ACGGC 1 cut(s) 120
BciVI GTATCC 1 cut(s) 7
BfaI CTAG 1 cut(s) 140
BfuI GTATCC 1 cut(s) 7
BisI GCNGC 3 cut(s) 131, 134, 137
BlsI GCNGC 3 cut(s) 132, 135, 138
BmsI GCATC 1 cut(s) 147
Bpu14I TTCGAA 1 cut(s) 204
Bsa29I ATCGAT 1 cut(s) 186
BsaJI CCNNGG 2 cut(s) 9, 167
BsaWI WCCGGW 1 cut(s) 21
Bse118I RCCGGY 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 161
BseAI TCCGGA 1 cut(s) 21
BseCI ATCGAT 1 cut(s) 186
BseDI CCNNGG 2 cut(s) 9, 167
BseMI GCAATG 1 cut(s) 161
BseXI GCAGC 3 cut(s) 142, 145, 148
BshFI GGCC 2 cut(s) 71, 107
BshVI ATCGAT 1 cut(s) 186
BsiSI CCGG 3 cut(s) 22, 72, 179
BsnI GGCC 2 cut(s) 71, 107
Bsp119I TTCGAA 1 cut(s) 204
Bsp13I TCCGGA 1 cut(s) 21
Bsp143I GATC 1 cut(s) 183
BspACI CCGC 1 cut(s) 98
BspANI GGCC 2 cut(s) 71, 107
BspDI ATCGAT 1 cut(s) 186
BspEI TCCGGA 1 cut(s) 21
BspT104I TTCGAA 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 2 cut(s) 9, 167
BssMI GATC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 200
BstBI TTCGAA 1 cut(s) 204
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 1 cut(s) 186
BstMBI GATC 1 cut(s) 183
BstMWI GCNNNNNNNGC 2 cut(s) 104, 136
BstV1I GCAGC 3 cut(s) 142, 145, 148
Bsu15I ATCGAT 1 cut(s) 186
BsuI GTATCC 1 cut(s) 7
BsuRI GGCC 2 cut(s) 71, 107
BsuTUI ATCGAT 1 cut(s) 186
BtsIMutI CAGTG 2 cut(s) 196, 220
CfoI GCGC 1 cut(s) 178
Cfr10I RCCGGY 1 cut(s) 71
ClaI ATCGAT 1 cut(s) 186
CviAII CATG 1 cut(s) 119
CviJI RGCY 5 cut(s) 28, 36, 71, 107, 139
CviKI_1 RGCY 5 cut(s) 28, 36, 71, 107, 139
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
EaeI YGGCCR 2 cut(s) 69, 105
Eco130I CCWWGG 1 cut(s) 167
EcoT14I CCWWGG 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 1 cut(s) 122
FaiI YATR 3 cut(s) 41, 120, 155
FatI CATG 1 cut(s) 118
Fnu4HI GCNGC 3 cut(s) 131, 134, 137
Fsp4HI GCNGC 3 cut(s) 131, 134, 137
FspBI CTAG 1 cut(s) 140
GlaI GCGC 1 cut(s) 177
GluI GCNGC 3 cut(s) 131, 134, 137
HaeIII GGCC 2 cut(s) 71, 107
HapII CCGG 3 cut(s) 22, 72, 179
HhaI GCGC 1 cut(s) 178
Hin1II CATG 1 cut(s) 122
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HpaII CCGG 3 cut(s) 22, 72, 179
HphI GGTGA 2 cut(s) 86, 112
Hpy166II GTNNAC 2 cut(s) 116, 196
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 1 cut(s) 22
Hpy8I GTNNAC 2 cut(s) 116, 196
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 136
Hsp92II CATG 1 cut(s) 122
HspAI GCGC 1 cut(s) 176
Kpn2I TCCGGA 1 cut(s) 21
Kzo9I GATC 1 cut(s) 183
LpnPI CCDG 3 cut(s) 35, 85, 192
Lsp1109I GCAGC 3 cut(s) 142, 145, 148
LweI GCATC 1 cut(s) 147
MaeI CTAG 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 100
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 2 cut(s) 78, 209
MluCI AATT 1 cut(s) 78
MnlI CCTC 1 cut(s) 19
MroI TCCGGA 1 cut(s) 21
MspI CCGG 3 cut(s) 22, 72, 179
MwoI GCNNNNNNNGC 2 cut(s) 104, 136
NdeII GATC 1 cut(s) 183
NlaIII CATG 1 cut(s) 122
NmuCI GTSAC 1 cut(s) 100
NspV TTCGAA 1 cut(s) 204
PkrI GCNGC 3 cut(s) 132, 135, 138
SatI GCNGC 3 cut(s) 131, 134, 137
Sau3AI GATC 1 cut(s) 183
SetI ASST 4 cut(s) 38, 69, 141, 173
SfaNI GCATC 1 cut(s) 147
SfuI TTCGAA 1 cut(s) 204
SgeI CNNG 9 cut(s) 22, 34, 64, 84, 131, 152, 160, 180, 191
Sse9I AATT 1 cut(s) 78
SsiI CCGC 1 cut(s) 98
SspMI CTAG 1 cut(s) 140
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 1 cut(s) 200
TaqI TCGA 2 cut(s) 186, 204
TasI AATT 1 cut(s) 78
TscAI CASTG 1 cut(s) 203
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 3 cut(s) 130, 133, 136
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 2 cut(s) 28, 78
TspRI CASTG 1 cut(s) 203
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.