Rh1CG431900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0005051
Physical Location & Seq
Forward (+)
68851710 .. 68855533
3824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG431900.1

Sequence Viewer

Length: 291 bp
ATGTTCTCCTCGGATACAATCCACAAGCCAATGAGCTTCATAGAAAACGACAAGGAAAAACAGAAGGTGGCCGGTGAAATTGCTTCTTCATCCTCGGCGGTGGCGGCCAATAGTGAACATGGAGAGAAGCAGCAGCAGCAGCTAGAGAGCAAGAGTATGATGCCATTGCCAAGGTTTGCGCCGGAGATCGATGGGGTTCACTGTTTCGAAACCATTGTTCTTCATATGGAAGCTCCCAGTTCATTTCCCGCCAAAGTACAAAGAAGCTTTCTCATACCCTTACCAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.61

Weight (kDa)

5.74

Isoelectric Point (pI)

67.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 98, 104, 249
AcoI YGGCCR 2 cut(s) 69, 105
AfaI GTAC 1 cut(s) 258
AluBI AGCT 4 cut(s) 36, 142, 233, 267
AluI AGCT 4 cut(s) 36, 142, 233, 267
AoxI GGCC 2 cut(s) 69, 105
ApeKI GCWGC 4 cut(s) 130, 133, 136, 139
AspLEI GCGC 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 86
AsuII TTCGAA 1 cut(s) 207
BbvI GCAGC 4 cut(s) 142, 145, 148, 151
BccI CCATC 1 cut(s) 185
BciVI GTATCC 1 cut(s) 7
BfaI CTAG 1 cut(s) 143
BfuI GTATCC 1 cut(s) 7
BisI GCNGC 5 cut(s) 105, 131, 134, 137, 140
BlsI GCNGC 5 cut(s) 106, 132, 135, 138, 141
BmrI ACTGGG 1 cut(s) 231
BmsI GCATC 1 cut(s) 150
BmuI ACTGGG 1 cut(s) 231
Bpu14I TTCGAA 1 cut(s) 207
Bsa29I ATCGAT 1 cut(s) 189
BsaJI CCNNGG 3 cut(s) 9, 93, 170
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 2 cut(s) 237, 284
Bse3DI GCAATG 1 cut(s) 164
BseCI ATCGAT 1 cut(s) 189
BseDI CCNNGG 3 cut(s) 9, 93, 170
BseGI GGATG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 164
BseNI ACTGG 2 cut(s) 237, 284
BseXI GCAGC 4 cut(s) 142, 145, 148, 151
BshFI GGCC 2 cut(s) 71, 107
BshVI ATCGAT 1 cut(s) 189
BsiSI CCGG 2 cut(s) 72, 182
BsnI GGCC 2 cut(s) 71, 107
Bsp119I TTCGAA 1 cut(s) 207
Bsp143I GATC 1 cut(s) 186
BspACI CCGC 3 cut(s) 98, 104, 249
BspANI GGCC 2 cut(s) 71, 107
BspDI ATCGAT 1 cut(s) 189
BspT104I TTCGAA 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 164
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 2 cut(s) 237, 284
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 3 cut(s) 9, 93, 170
BssMI GATC 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 203
BstBI TTCGAA 1 cut(s) 207
BstF5I GGATG 1 cut(s) 89
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 1 cut(s) 189
BstMBI GATC 1 cut(s) 186
BstMWI GCNNNNNNNGC 3 cut(s) 104, 136, 139
BstV1I GCAGC 4 cut(s) 142, 145, 148, 151
Bsu15I ATCGAT 1 cut(s) 189
BsuI GTATCC 1 cut(s) 7
BsuRI GGCC 2 cut(s) 71, 107
BsuTUI ATCGAT 1 cut(s) 189
BtsCI GGATG 1 cut(s) 89
BtsIMutI CAGTG 2 cut(s) 199, 291
CfoI GCGC 1 cut(s) 181
Cfr10I RCCGGY 1 cut(s) 71
ClaI ATCGAT 1 cut(s) 189
Csp6I GTAC 1 cut(s) 257
CviAII CATG 1 cut(s) 119
CviJI RGCY 7 cut(s) 28, 36, 71, 107, 142, 233, 267
CviKI_1 RGCY 7 cut(s) 28, 36, 71, 107, 142, 233, 267
CviQI GTAC 1 cut(s) 257
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
EaeI YGGCCR 2 cut(s) 69, 105
Eco130I CCWWGG 1 cut(s) 170
EcoT14I CCWWGG 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 1 cut(s) 122
FaiI YATR 6 cut(s) 41, 120, 158, 225, 227, 275
FatI CATG 1 cut(s) 118
FauI CCCGC 1 cut(s) 256
FauNDI CATATG 1 cut(s) 225
Fnu4HI GCNGC 5 cut(s) 105, 131, 134, 137, 140
FokI GGATG 1 cut(s) 76
Fsp4HI GCNGC 5 cut(s) 105, 131, 134, 137, 140
FspBI CTAG 1 cut(s) 143
GlaI GCGC 1 cut(s) 180
GluI GCNGC 5 cut(s) 105, 131, 134, 137, 140
HaeIII GGCC 2 cut(s) 71, 107
HapII CCGG 2 cut(s) 72, 182
HhaI GCGC 1 cut(s) 181
Hin1II CATG 1 cut(s) 122
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HindIII AAGCTT 1 cut(s) 265
HpaII CCGG 2 cut(s) 72, 182
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 2 cut(s) 116, 199
Hpy188I TCNGA 1 cut(s) 13
Hpy8I GTNNAC 2 cut(s) 116, 199
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 203
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 136, 139
Hsp92II CATG 1 cut(s) 122
HspAI GCGC 1 cut(s) 179
Kzo9I GATC 1 cut(s) 186
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 3 cut(s) 85, 195, 250
Lsp1109I GCAGC 4 cut(s) 142, 145, 148, 151
LweI GCATC 1 cut(s) 150
MaeI CTAG 1 cut(s) 143
MalI GATC 1 cut(s) 188
MboI GATC 1 cut(s) 186
MboII GAAGA 2 cut(s) 78, 212
MluCI AATT 1 cut(s) 78
MnlI CCTC 2 cut(s) 19, 103
MspI CCGG 2 cut(s) 72, 182
MwoI GCNNNNNNNGC 3 cut(s) 104, 136, 139
NdeI CATATG 1 cut(s) 225
NdeII GATC 1 cut(s) 186
NlaIII CATG 1 cut(s) 122
NmeAIII GCCGAG 1 cut(s) 74
NspV TTCGAA 1 cut(s) 207
PkrI GCNGC 5 cut(s) 106, 132, 135, 138, 141
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
SatI GCNGC 5 cut(s) 105, 131, 134, 137, 140
Sau3AI GATC 1 cut(s) 186
SetI ASST 6 cut(s) 38, 69, 144, 176, 235, 269
SfaNI GCATC 1 cut(s) 150
SfuI TTCGAA 1 cut(s) 207
Sse9I AATT 1 cut(s) 78
SsiI CCGC 3 cut(s) 98, 104, 249
SspMI CTAG 1 cut(s) 143
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 1 cut(s) 203
TaqI TCGA 2 cut(s) 189, 207
TasI AATT 1 cut(s) 78
TatI WGTACW 1 cut(s) 256
TauI GCSGC 1 cut(s) 107
TscAI CASTG 2 cut(s) 206, 291
TseI GCWGC 4 cut(s) 130, 133, 136, 139
TspDTI ATGAA 4 cut(s) 28, 78, 212, 231
TspRI CASTG 2 cut(s) 206, 291
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.