Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002242.1

Orthogroup ID

OG0005051

Physical Location & Seq

Genomic Coordinates Forward (+)

6317 .. 8428

Gene Structure 2112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002242.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgtctaccggtgaagttgcttgcgcctacgccgccatgattcttcatgacgagggcatcccaatcacagctgagaagattgctactttgatcaaatctgcaaatgttaacgtggaagcatactggcccaacctctttgccaatcttgcggagcagaaggatcttggtggccttacaatgaatgttggatgtggtggtggtggtgcagctccagtagctatggctgctccggctgccgccactgctgctgctcctgcagccgaggagaagaaggatgagccagaggaagaaagtgatgatgacctggaaacaatgttctcctcggatacaatccacaagccaatgagcttcataaaaaacgacaaggaaaaacagaaggtggccggtcaaattgcttcttcatcatcgccggtggcggccaatagtgaatatggagagaagcagcagcagctgctagagagcaagagtatgatgccattgccaaggtttgcgccggagatcgatggggttcactgtttcgaaaccattgttcttcacggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

180

Amino Acids

18.97

Weight (kDa)

4.56

Isoelectric Point (pI)

52.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32920 AT1G32928
fragaria_vesca	FvH4_5g10560 FvH4_7g32852
prunus_persica	Prupe.5G133000_v2.0.a1 Prupe.5G133100_v2.0.a1 Prupe.5G133200_v2.0.a1
pyrus_communis	pycom06g11340 pycom06g11350 pycom14g11400
rosa_chinensis	RchiOBHm_Chr1g0382811 RchiOBHm_Chr7g0187591
rosa_laevigata	RLG00000004768 RLG00000004769 RLG00000026157
rosa_multiflora	Rmu_sc0002242.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267270 Rroxscaffold_4G00277880
rosa_rugosa	Rorug01G0436400 Rorug06G0482800
rosa_samantha	Rh1AG461400 Rh1CG431900 Rh5AG237600 Rh5DG246100 Rh7AG087800 Rh7BG089000 Rh7BG089100 Rh7CG088200 Rh7CG088400
rosa_wichuraiana	Rw0G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	4 cut(s)	33, 149, 237, 416
AclWI	GGATC	1 cut(s)	168
AcoI	YGGCCR	2 cut(s)	381, 417
AgeI	ACCGGT	1 cut(s)	8
AjnI	CCWGG	1 cut(s)	303
AloI	GAACNNNNNNTCC	2 cut(s)	299, 331
AluBI	AGCT	5 cut(s)	71, 209, 218, 348, 451
AluI	AGCT	5 cut(s)	71, 209, 218, 348, 451
AlwI	GGATC	1 cut(s)	168
AlwNI	CAGNNNCTG	1 cut(s)	451
AoxI	GGCC	4 cut(s)	125, 169, 381, 417
AsiGI	ACCGGT	1 cut(s)	8
AspLEI	GCGC	2 cut(s)	26, 493
AspS9I	GGNCC	1 cut(s)	126
AsuHPI	GGTGA	1 cut(s)	23
AsuII	TTCGAA	1 cut(s)	519
BccI	CCATC	1 cut(s)	497
BciT130I	CCWGG	1 cut(s)	305
BciVI	GTATCC	1 cut(s)	319
BclI	TGATCA	1 cut(s)	90
BfaI	CTAG	1 cut(s)	455
BfmI	CTRYAG	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	319
Bme1390I	CCNGG	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	305
BmsI	GCATC	2 cut(s)	66, 462
BpmI	CTGGAG	1 cut(s)	195
Bpu14I	TTCGAA	1 cut(s)	519
Bsa29I	ATCGAT	1 cut(s)	501
BsaJI	CCNNGG	3 cut(s)	261, 321, 482
BsaWI	WCCGGW	1 cut(s)	8
Bse118I	RCCGGY	3 cut(s)	8, 383, 409
Bse1I	ACTGG	2 cut(s)	128, 212
Bse3DI	GCAATG	1 cut(s)	476
BseBI	CCWGG	1 cut(s)	305
BseCI	ATCGAT	1 cut(s)	501
BseDI	CCNNGG	3 cut(s)	261, 321, 482
BseGI	GGATG	3 cut(s)	57, 194, 280
BseMI	GCAATG	1 cut(s)	476
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	2 cut(s)	128, 212
BseRI	GAGGAG	2 cut(s)	278, 310
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	4 cut(s)	127, 171, 383, 419
BshTI	ACCGGT	1 cut(s)	8
BshVI	ATCGAT	1 cut(s)	501
BsiSI	CCGG	5 cut(s)	9, 230, 384, 410, 494
BsnI	GGCC	4 cut(s)	127, 171, 383, 419
Bsp119I	TTCGAA	1 cut(s)	519
Bsp143I	GATC	3 cut(s)	90, 160, 498
BspACI	CCGC	4 cut(s)	33, 149, 237, 416
BspANI	GGCC	4 cut(s)	127, 171, 383, 419
BspCNI	CTCAG	1 cut(s)	64
BspDI	ATCGAT	1 cut(s)	501
BspHI	TCATGA	1 cut(s)	46
BspMAI	CTGCAG	1 cut(s)	259
BspPI	GGATC	1 cut(s)	168
BspT104I	TTCGAA	1 cut(s)	519
BsrDI	GCAATG	1 cut(s)	476
BsrFI	RCCGGY	3 cut(s)	8, 383, 409
BsrI	ACTGG	2 cut(s)	128, 212
BssAI	RCCGGY	3 cut(s)	8, 383, 409
BssECI	CCNNGG	3 cut(s)	261, 321, 482
BssMI	GATC	3 cut(s)	90, 160, 498
BssT1I	CCWWGG	1 cut(s)	482
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	1 cut(s)	515
BstAPI	GCANNNNNTGC	1 cut(s)	451
BstBI	TTCGAA	1 cut(s)	519
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	3 cut(s)	57, 194, 280
BstHHI	GCGC	2 cut(s)	26, 493
BstKTI	GATC	3 cut(s)	93, 163, 501
BstMBI	GATC	3 cut(s)	90, 160, 498
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	303
BstSFI	CTRYAG	1 cut(s)	255
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
Bsu15I	ATCGAT	1 cut(s)	501
BsuI	GTATCC	1 cut(s)	319
BsuRI	GGCC	4 cut(s)	127, 171, 383, 419
BsuTUI	ATCGAT	1 cut(s)	501
BtgZI	GCGATG	1 cut(s)	390
BtsCI	GGATG	3 cut(s)	57, 194, 280
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	2 cut(s)	240, 511
Cac8I	GCNNGC	1 cut(s)	22
CaiI	CAGNNNCTG	1 cut(s)	451
CciI	TCATGA	1 cut(s)	46
CfoI	GCGC	2 cut(s)	26, 493
Cfr10I	RCCGGY	3 cut(s)	8, 383, 409
Cfr13I	GGNCC	1 cut(s)	126
ClaI	ATCGAT	1 cut(s)	501
CspAI	ACCGGT	1 cut(s)	8
CviAII	CATG	2 cut(s)	37, 47
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	3 cut(s)	92, 162, 500
DpnII	GATC	3 cut(s)	90, 160, 498
EaeI	YGGCCR	2 cut(s)	381, 417
Eco130I	CCWWGG	1 cut(s)	482
EcoRII	CCWGG	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	482
ErhI	CCWWGG	1 cut(s)	482
FaeI	CATG	2 cut(s)	40, 50
FaiI	YATR	7 cut(s)	38, 48, 121, 221, 353, 432, 470
FatI	CATG	2 cut(s)	36, 46
FbaI	TGATCA	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	5
FokI	GGATG	3 cut(s)	44, 201, 287
FspBI	CTAG	1 cut(s)	455
GlaI	GCGC	2 cut(s)	25, 492
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	4 cut(s)	127, 171, 383, 419
HapII	CCGG	5 cut(s)	9, 230, 384, 410, 494
HhaI	GCGC	2 cut(s)	26, 493
Hin1II	CATG	2 cut(s)	40, 50
Hin6I	GCGC	2 cut(s)	24, 491
HinP1I	GCGC	2 cut(s)	24, 491
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	1 cut(s)	40
HpaI	GTTAAC	1 cut(s)	109
HpaII	CCGG	5 cut(s)	9, 230, 384, 410, 494
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	3 cut(s)	6, 109, 511
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	3 cut(s)	6, 109, 511
HpyAV	CCTTC	3 cut(s)	151, 265, 370
HpyCH4III	ACNGT	1 cut(s)	515
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	3 cut(s)	101, 206, 257
HpyF3I	CTNAG	1 cut(s)	72
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	40, 50
HspAI	GCGC	2 cut(s)	24, 491
Ksp22I	TGATCA	1 cut(s)	90
KspAI	GTTAAC	1 cut(s)	109
Kzo9I	GATC	3 cut(s)	90, 160, 498
LmnI	GCTCC	4 cut(s)	151, 214, 232, 256
LweI	GCATC	2 cut(s)	66, 462
MaeI	CTAG	1 cut(s)	455
MaeII	ACGT	1 cut(s)	111
MalI	GATC	3 cut(s)	92, 162, 500
MboI	GATC	3 cut(s)	90, 160, 498
MboII	GAAGA	6 cut(s)	35, 88, 280, 299, 390, 524
MflI	RGATCY	1 cut(s)	160
MluCI	AATT	1 cut(s)	390
MmeI	TCCRAC	1 cut(s)	166
MnlI	CCTC	5 cut(s)	46, 143, 256, 277, 331
MseI	TTAA	1 cut(s)	108
MspA1I	CMGCKG	2 cut(s)	71, 451
MspI	CCGG	5 cut(s)	9, 230, 384, 410, 494
MspR9I	CCNGG	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	305
NdeII	GATC	3 cut(s)	90, 160, 498
NlaIII	CATG	2 cut(s)	40, 50
NmeAIII	GCCGAG	1 cut(s)	286
NspV	TTCGAA	1 cut(s)	519
PagI	TCATGA	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	40
PinAI	ACCGGT	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	126
PstI	CTGCAG	1 cut(s)	259
PstNI	CAGNNNCTG	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	160
PvuII	CAGCTG	2 cut(s)	71, 451
SaqAI	TTAA	1 cut(s)	108
Sau3AI	GATC	3 cut(s)	90, 160, 498
Sau96I	GGNCC	1 cut(s)	126
ScrFI	CCNGG	1 cut(s)	305
SfaNI	GCATC	2 cut(s)	66, 462
SfcI	CTRYAG	1 cut(s)	255
SfuI	TTCGAA	1 cut(s)	519
SgrAI	CRCCGGYG	1 cut(s)	409
Sse9I	AATT	1 cut(s)	390
SsiI	CCGC	4 cut(s)	33, 149, 237, 416
SspMI	CTAG	1 cut(s)	455
StyD4I	CCNGG	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	482
TaaI	ACNGT	1 cut(s)	515
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	2 cut(s)	501, 519
TasI	AATT	1 cut(s)	390
TauI	GCSGC	3 cut(s)	35, 239, 419
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	2 cut(s)	247, 518
TspDTI	ATGAA	4 cut(s)	35, 194, 340, 390
TspRI	CASTG	2 cut(s)	247, 518
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.