No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G32920 AT1G32928 |
| fragaria_vesca | FvH4_5g10560 FvH4_7g32852 |
| prunus_persica | Prupe.5G133000_v2.0.a1 Prupe.5G133100_v2.0.a1 Prupe.5G133200_v2.0.a1 |
| pyrus_communis | pycom06g11340 pycom06g11350 pycom14g11400 |
| rosa_chinensis | RchiOBHm_Chr1g0382811 RchiOBHm_Chr7g0187591 |
| rosa_laevigata | RLG00000004768 RLG00000004769 RLG00000026157 |
| rosa_multiflora | Rmu_sc0002242.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00267270 Rroxscaffold_4G00277880 |
| rosa_rugosa | Rorug01G0436400 Rorug06G0482800 |
| rosa_samantha | Rh1AG461400 Rh1CG431900 Rh5AG237600 Rh5DG246100 Rh7AG087800 Rh7BG089000 Rh7BG089100 Rh7CG088200 Rh7CG088400 |
| rosa_wichuraiana | Rw0G002620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 98, 104 |
| AclWI | GGATC | 2 cut(s) | 244, 269 |
| AcoI | YGGCCR | 3 cut(s) | 69, 105, 301 |
| AgsI | TTSAA | 1 cut(s) | 379 |
| AluBI | AGCT | 3 cut(s) | 36, 139, 208 |
| AluI | AGCT | 3 cut(s) | 36, 139, 208 |
| AlwI | GGATC | 2 cut(s) | 244, 269 |
| AoxI | GGCC | 3 cut(s) | 69, 105, 301 |
| ApeKI | GCWGC | 4 cut(s) | 130, 133, 136, 258 |
| AspLEI | GCGC | 1 cut(s) | 178 |
| AsuHPI | GGTGA | 1 cut(s) | 86 |
| BbvI | GCAGC | 4 cut(s) | 142, 145, 148, 270 |
| BccI | CCATC | 3 cut(s) | 182, 219, 292 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 176, 210 |
| BciVI | GTATCC | 1 cut(s) | 7 |
| BfaI | CTAG | 1 cut(s) | 140 |
| BfuI | GTATCC | 1 cut(s) | 7 |
| BisI | GCNGC | 5 cut(s) | 105, 131, 134, 137, 259 |
| BlsI | GCNGC | 5 cut(s) | 106, 132, 135, 138, 260 |
| BmiI | GGNNCC | 2 cut(s) | 298, 308 |
| BmsI | GCATC | 1 cut(s) | 147 |
| Bpu10I | CCTNAGC | 1 cut(s) | 254 |
| Bsa29I | ATCGAT | 1 cut(s) | 186 |
| BsaJI | CCNNGG | 2 cut(s) | 9, 167 |
| Bse118I | RCCGGY | 2 cut(s) | 71, 299 |
| Bse1I | ACTGG | 1 cut(s) | 278 |
| Bse3DI | GCAATG | 1 cut(s) | 161 |
| BseCI | ATCGAT | 1 cut(s) | 186 |
| BseDI | CCNNGG | 2 cut(s) | 9, 167 |
| BseGI | GGATG | 1 cut(s) | 284 |
| BseMI | GCAATG | 1 cut(s) | 161 |
| BseNI | ACTGG | 1 cut(s) | 278 |
| BseX3I | CGGCCG | 1 cut(s) | 301 |
| BseXI | GCAGC | 4 cut(s) | 142, 145, 148, 270 |
| Bsh1285I | CGRYCG | 1 cut(s) | 304 |
| BshFI | GGCC | 3 cut(s) | 71, 107, 303 |
| BshVI | ATCGAT | 1 cut(s) | 186 |
| BsiEI | CGRYCG | 1 cut(s) | 304 |
| BsiSI | CCGG | 5 cut(s) | 72, 179, 294, 300, 304 |
| BslFI | GGGAC | 1 cut(s) | 266 |
| BsmFI | GGGAC | 1 cut(s) | 266 |
| BsnI | GGCC | 3 cut(s) | 71, 107, 303 |
| Bsp143I | GATC | 3 cut(s) | 183, 249, 274 |
| BspACI | CCGC | 2 cut(s) | 98, 104 |
| BspANI | GGCC | 3 cut(s) | 71, 107, 303 |
| BspDI | ATCGAT | 1 cut(s) | 186 |
| BspLI | GGNNCC | 2 cut(s) | 298, 308 |
| BspPI | GGATC | 2 cut(s) | 244, 269 |
| BsrDI | GCAATG | 1 cut(s) | 161 |
| BsrFI | RCCGGY | 2 cut(s) | 71, 299 |
| BsrI | ACTGG | 1 cut(s) | 278 |
| BssAI | RCCGGY | 2 cut(s) | 71, 299 |
| BssECI | CCNNGG | 2 cut(s) | 9, 167 |
| BssMI | GATC | 3 cut(s) | 183, 249, 274 |
| BssT1I | CCWWGG | 1 cut(s) | 167 |
| BstC8I | GCNNGC | 1 cut(s) | 206 |
| BstDEI | CTNAG | 1 cut(s) | 254 |
| BstF5I | GGATG | 1 cut(s) | 284 |
| BstHHI | GCGC | 1 cut(s) | 178 |
| BstKTI | GATC | 3 cut(s) | 186, 252, 277 |
| BstMBI | GATC | 3 cut(s) | 183, 249, 274 |
| BstMCI | CGRYCG | 1 cut(s) | 304 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 104, 136 |
| BstV1I | GCAGC | 4 cut(s) | 142, 145, 148, 270 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 218 |
| BstZI | CGGCCG | 1 cut(s) | 301 |
| Bsu15I | ATCGAT | 1 cut(s) | 186 |
| BsuI | GTATCC | 1 cut(s) | 7 |
| BsuRI | GGCC | 3 cut(s) | 71, 107, 303 |
| BsuTUI | ATCGAT | 1 cut(s) | 186 |
| BtsCI | GGATG | 1 cut(s) | 284 |
| Cac8I | GCNNGC | 1 cut(s) | 206 |
| CfoI | GCGC | 1 cut(s) | 178 |
| Cfr10I | RCCGGY | 2 cut(s) | 71, 299 |
| ClaI | ATCGAT | 1 cut(s) | 186 |
| CviAII | CATG | 1 cut(s) | 119 |
| CviJI | RGCY | 8 cut(s) | 28, 36, 71, 107, 139, 208, 303, 392 |
| CviKI_1 | RGCY | 8 cut(s) | 28, 36, 71, 107, 139, 208, 303, 392 |
| DdeI | CTNAG | 1 cut(s) | 254 |
| DpnI | GATC | 3 cut(s) | 185, 251, 276 |
| DpnII | GATC | 3 cut(s) | 183, 249, 274 |
| EaeI | YGGCCR | 3 cut(s) | 69, 105, 301 |
| EagI | CGGCCG | 1 cut(s) | 301 |
| EclXI | CGGCCG | 1 cut(s) | 301 |
| Eco130I | CCWWGG | 1 cut(s) | 167 |
| Eco52I | CGGCCG | 1 cut(s) | 301 |
| EcoT14I | CCWWGG | 1 cut(s) | 167 |
| ErhI | CCWWGG | 1 cut(s) | 167 |
| FaeI | CATG | 1 cut(s) | 122 |
| FaqI | GGGAC | 1 cut(s) | 266 |
| FatI | CATG | 1 cut(s) | 118 |
| Fnu4HI | GCNGC | 5 cut(s) | 105, 131, 134, 137, 259 |
| FokI | GGATG | 1 cut(s) | 271 |
| Fsp4HI | GCNGC | 5 cut(s) | 105, 131, 134, 137, 259 |
| FspBI | CTAG | 1 cut(s) | 140 |
| GlaI | GCGC | 1 cut(s) | 177 |
| GluI | GCNGC | 5 cut(s) | 105, 131, 134, 137, 259 |
| HaeIII | GGCC | 3 cut(s) | 71, 107, 303 |
| HapII | CCGG | 5 cut(s) | 72, 179, 294, 300, 304 |
| HhaI | GCGC | 1 cut(s) | 178 |
| Hin1II | CATG | 1 cut(s) | 122 |
| Hin6I | GCGC | 1 cut(s) | 176 |
| HinP1I | GCGC | 1 cut(s) | 176 |
| HinfI | GANTC | 1 cut(s) | 359 |
| HpaII | CCGG | 5 cut(s) | 72, 179, 294, 300, 304 |
| HphI | GGTGA | 1 cut(s) | 86 |
| Hpy166II | GTNNAC | 1 cut(s) | 116 |
| Hpy188I | TCNGA | 3 cut(s) | 13, 249, 321 |
| Hpy8I | GTNNAC | 1 cut(s) | 116 |
| Hpy99I | CGWCG | 1 cut(s) | 293 |
| HpyAV | CCTTC | 1 cut(s) | 58 |
| HpyCH4V | TGCA | 2 cut(s) | 197, 386 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 104, 136 |
| HpyF3I | CTNAG | 1 cut(s) | 254 |
| Hsp92II | CATG | 1 cut(s) | 122 |
| HspAI | GCGC | 1 cut(s) | 176 |
| Kzo9I | GATC | 3 cut(s) | 183, 249, 274 |
| LmnI | GCTCC | 1 cut(s) | 213 |
| LpnPI | CCDG | 6 cut(s) | 85, 192, 291, 307, 313, 317 |
| Lsp1109I | GCAGC | 4 cut(s) | 142, 145, 148, 270 |
| LweI | GCATC | 1 cut(s) | 147 |
| MaeI | CTAG | 1 cut(s) | 140 |
| MalI | GATC | 3 cut(s) | 185, 251, 276 |
| MboI | GATC | 3 cut(s) | 183, 249, 274 |
| MboII | GAAGA | 2 cut(s) | 78, 328 |
| MluCI | AATT | 2 cut(s) | 78, 225 |
| MnlI | CCTC | 3 cut(s) | 19, 321, 354 |
| MspI | CCGG | 5 cut(s) | 72, 179, 294, 300, 304 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 104, 136 |
| NdeII | GATC | 3 cut(s) | 183, 249, 274 |
| NlaIII | CATG | 1 cut(s) | 122 |
| NlaIV | GGNNCC | 2 cut(s) | 298, 308 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 363 |
| PfeI | GAWTC | 1 cut(s) | 359 |
| PkrI | GCNGC | 5 cut(s) | 106, 132, 135, 138, 260 |
| PspN4I | GGNNCC | 2 cut(s) | 298, 308 |
| SatI | GCNGC | 5 cut(s) | 105, 131, 134, 137, 259 |
| Sau3AI | GATC | 3 cut(s) | 183, 249, 274 |
| SetI | ASST | 6 cut(s) | 38, 69, 141, 173, 210, 346 |
| SfaNI | GCATC | 1 cut(s) | 147 |
| Sse9I | AATT | 2 cut(s) | 78, 225 |
| SsiI | CCGC | 2 cut(s) | 98, 104 |
| SspI | AATATT | 1 cut(s) | 382 |
| SspMI | CTAG | 1 cut(s) | 140 |
| StyI | CCWWGG | 1 cut(s) | 167 |
| TaqI | TCGA | 4 cut(s) | 186, 273, 313, 362 |
| TasI | AATT | 2 cut(s) | 78, 225 |
| TauI | GCSGC | 1 cut(s) | 107 |
| TfiI | GAWTC | 1 cut(s) | 359 |
| TseI | GCWGC | 4 cut(s) | 130, 133, 136, 258 |
| TspDTI | ATGAA | 2 cut(s) | 28, 78 |
| TspGWI | ACGGA | 1 cut(s) | 277 |
| XspI | CTAG | 1 cut(s) | 140 |