Rh7AG087800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005051
Physical Location & Seq
Forward (+)
6660151 .. 6660393
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG087800.1

Sequence Viewer

Length: 243 bp
ATGTTCAGTTCTTTCGATGCTTTGTGCGCCGAGTTCTTGGGCCAAACTGTCAAGGCCTCCTTCCCTGTTTCCCAGCAGCAGAAGAGTACTACTAGCGTGTTGAGTAACTTGAATAAGAAGCAAGAGTCTTTGCCAGAAGCCGGCCAGGTTAAGAAGCAGGAGCAGCAGAAGACGGCACCACCACCACCGCGGCGGTTTGCGGTCGAGTTGGATGGACTCCACTGTTTTGAAACCCTCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.85

Weight (kDa)

7.79

Isoelectric Point (pI)

65.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 175
AccII CGCG 1 cut(s) 190
AciI CCGC 4 cut(s) 188, 190, 193, 200
AcoI YGGCCR 1 cut(s) 142
AfaI GTAC 1 cut(s) 88
AfiI CCNNNNNNNGG 1 cut(s) 140
AgsI TTSAA 2 cut(s) 112, 230
AjnI CCWGG 1 cut(s) 144
AoxI GGCC 3 cut(s) 40, 54, 142
ApeKI GCWGC 2 cut(s) 76, 163
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 176
BbvI GCAGC 2 cut(s) 88, 175
BccI CCATC 1 cut(s) 206
BceAI ACGGC 1 cut(s) 189
BciT130I CCWGG 1 cut(s) 146
BfaI CTAG 2 cut(s) 93, 241
BisI GCNGC 3 cut(s) 77, 164, 191
BlsI GCNGC 3 cut(s) 78, 165, 192
BmcAI AGTACT 1 cut(s) 88
Bme1390I CCNGG 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 1 cut(s) 7
BpiI GAAGAC 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 188
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse118I RCCGGY 1 cut(s) 140
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 140
BseXI GCAGC 2 cut(s) 88, 175
BseYI CCCAGC 1 cut(s) 72
Bsh1236I CGCG 1 cut(s) 190
Bsh1285I CGRYCG 1 cut(s) 204
BshFI GGCC 3 cut(s) 42, 56, 144
BshNI GGYRCC 1 cut(s) 175
BsiEI CGRYCG 1 cut(s) 204
BsiSI CCGG 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 140
BsnI GGCC 3 cut(s) 42, 56, 144
BspACI CCGC 4 cut(s) 188, 190, 193, 200
BspANI GGCC 3 cut(s) 42, 56, 144
BspFNI CGCG 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 175
BsrFI RCCGGY 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 2 cut(s) 49, 224
Bst6I CTCTTC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 142
BstDSI CCRYGG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 217
BstFNI CGCG 1 cut(s) 190
BstHHI GCGC 1 cut(s) 29
BstMCI CGRYCG 1 cut(s) 204
BstMWI GCNNNNNNNGC 2 cut(s) 26, 163
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BstUI CGCG 1 cut(s) 190
BstV1I GCAGC 2 cut(s) 88, 175
BstV2I GAAGAC 1 cut(s) 176
BsuRI GGCC 3 cut(s) 42, 56, 144
BtgI CCRYGG 1 cut(s) 188
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 142
CfoI GCGC 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 40
Cfr42I CCGCGG 1 cut(s) 191
Csp6I GTAC 1 cut(s) 87
CviJI RGCY 4 cut(s) 42, 56, 140, 144
CviKI_1 RGCY 4 cut(s) 42, 56, 140, 144
CviQI GTAC 1 cut(s) 87
EaeI YGGCCR 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Eco147I AGGCCT 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 144
FalI AAGNNNNNCTT 2 cut(s) 44, 76
Fnu4HI GCNGC 3 cut(s) 77, 164, 191
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 3 cut(s) 77, 164, 191
FspBI CTAG 2 cut(s) 93, 241
GlaI GCGC 1 cut(s) 28
GluI GCNGC 3 cut(s) 77, 164, 191
GsaI CCCAGC 1 cut(s) 76
HaeIII GGCC 3 cut(s) 42, 56, 144
HapII CCGG 1 cut(s) 141
HhaI GCGC 1 cut(s) 29
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HinfI GANTC 2 cut(s) 125, 216
HpaII CCGG 1 cut(s) 141
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 2 cut(s) 49, 224
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 163
HspAI GCGC 1 cut(s) 27
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
KspI CCGCGG 1 cut(s) 191
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 7 cut(s) 78, 86, 131, 143, 147, 154, 158
Lsp1109I GCAGC 2 cut(s) 88, 175
LweI GCATC 1 cut(s) 7
MaeI CTAG 2 cut(s) 93, 241
MaeIII GTNAC 1 cut(s) 104
MboII GAAGA 2 cut(s) 94, 181
MlyI GAGTC 2 cut(s) 134, 210
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 1 cut(s) 67
MroNI GCCGGC 1 cut(s) 140
MseI TTAA 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 190
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MvnI CGCG 1 cut(s) 190
MwoI GCNNNNNNNGC 2 cut(s) 26, 163
NaeI GCCGGC 1 cut(s) 142
NgoMIV GCCGGC 1 cut(s) 140
NlaIV GGNNCC 1 cut(s) 177
NmeAIII GCCGAG 1 cut(s) 55
PceI AGGCCT 1 cut(s) 56
PdiI GCCGGC 1 cut(s) 142
PkrI GCNGC 3 cut(s) 78, 165, 192
PleI GAGTC 2 cut(s) 133, 210
PpsI GAGTC 2 cut(s) 133, 210
Psp6I CCWGG 1 cut(s) 144
PspFI CCCAGC 1 cut(s) 72
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 40
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SacII CCGCGG 1 cut(s) 191
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 3 cut(s) 77, 164, 191
Sau96I GGNCC 1 cut(s) 40
ScaI AGTACT 1 cut(s) 88
SchI GAGTC 2 cut(s) 134, 210
ScrFI CCNGG 1 cut(s) 146
SetI ASST 1 cut(s) 150
SfaNI GCATC 1 cut(s) 7
Sfr303I CCGCGG 1 cut(s) 191
SgrBI CCGCGG 1 cut(s) 191
SseBI AGGCCT 1 cut(s) 56
SsiI CCGC 4 cut(s) 188, 190, 193, 200
SspMI CTAG 2 cut(s) 93, 241
StuI AGGCCT 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 144
TaaI ACNGT 2 cut(s) 49, 224
TaqI TCGA 2 cut(s) 15, 204
TatI WGTACW 1 cut(s) 86
TauI GCSGC 1 cut(s) 193
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 1 cut(s) 227
TseI GCWGC 2 cut(s) 76, 163
TspRI CASTG 1 cut(s) 227
XspI CTAG 2 cut(s) 93, 241
ZrmI AGTACT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.