Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005051

Physical Location & Seq

Genomic Coordinates Reverse (-)

62101884 .. 62103423

Gene Structure 1540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004768

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGAGCTTGCTGGTCGTTCATGTTTATCCATGAACAAGTTTGACTCAAGTTGGTGGGCTTTGGTAAACTTTTCAAGCAATCAATCAATCATGAATTCTATGTTCAGTTCTTTCGATGCTTTGTGCGCCGAGTTCTTGGGCCAAACTGTGAACGCCTCCTTCTCTGTTTCCCAGCAGCAGAAGAGTACTCCTAGCGTGTTGAGTAACTTGAATAAGAAGCAAGAGTCTTTGCCAGAAGCCGGCCAGGTTAAGAAGCAGGAGCAGCAGAAGACGGCACCACCACCACCGCGGCGGTTTGCGGTCGAGTTGGATGGACTCCACTGTTTTGAAACCCTCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.55

Weight (kDa)

6.55

Isoelectric Point (pI)

65.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32920 AT1G32928
fragaria_vesca	FvH4_5g10560 FvH4_7g32852
prunus_persica	Prupe.5G133000_v2.0.a1 Prupe.5G133100_v2.0.a1 Prupe.5G133200_v2.0.a1
pyrus_communis	pycom06g11340 pycom06g11350 pycom14g11400
rosa_chinensis	RchiOBHm_Chr1g0382811 RchiOBHm_Chr7g0187591
rosa_laevigata	RLG00000004768 RLG00000004769 RLG00000026157
rosa_multiflora	Rmu_sc0002242.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267270 Rroxscaffold_4G00277880
rosa_rugosa	Rorug01G0436400 Rorug06G0482800
rosa_samantha	Rh1AG461400 Rh1CG431900 Rh5AG237600 Rh5DG246100 Rh7AG087800 Rh7BG089000 Rh7BG089100 Rh7CG088200 Rh7CG088400
rosa_wichuraiana	Rw0G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	274
AccII	CGCG	1 cut(s)	289
AciI	CCGC	4 cut(s)	287, 289, 292, 299
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	94
AfaI	GTAC	1 cut(s)	187
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	3 cut(s)	75, 211, 329
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
AoxI	GGCC	2 cut(s)	139, 241
ApeKI	GCWGC	2 cut(s)	175, 262
ApoI	RAATTY	1 cut(s)	94
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	274
BbsI	GAAGAC	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	187, 274
BccI	CCATC	1 cut(s)	305
BceAI	ACGGC	1 cut(s)	288
BciT130I	CCWGG	1 cut(s)	245
BfaI	CTAG	2 cut(s)	192, 340
BisI	GCNGC	3 cut(s)	176, 263, 290
BlsI	GCNGC	3 cut(s)	177, 264, 291
BmcAI	AGTACT	1 cut(s)	187
Bme1390I	CCNGG	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse118I	RCCGGY	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseXI	GCAGC	2 cut(s)	187, 274
BseYI	CCCAGC	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	289
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	2 cut(s)	141, 243
BshNI	GGYRCC	1 cut(s)	274
BsiEI	CGRYCG	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	240
BslI	CCNNNNNNNGG	1 cut(s)	239
BsnI	GGCC	2 cut(s)	141, 243
BspACI	CCGC	4 cut(s)	287, 289, 292, 299
BspANI	GGCC	2 cut(s)	141, 243
BspFNI	CGCG	1 cut(s)	289
BspHI	TCATGA	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	276
BspT107I	GGYRCC	1 cut(s)	274
BsrFI	RCCGGY	1 cut(s)	239
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	2 cut(s)	148, 323
Bst6I	CTCTTC	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	9, 241
BstDSI	CCRYGG	1 cut(s)	287
BstF5I	GGATG	1 cut(s)	316
BstFNI	CGCG	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	128
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 262
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	243
BstUI	CGCG	1 cut(s)	289
BstV1I	GCAGC	2 cut(s)	187, 274
BstV2I	GAAGAC	1 cut(s)	275
BsuRI	GGCC	2 cut(s)	141, 243
BtgI	CCRYGG	1 cut(s)	287
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	319
Cac8I	GCNNGC	2 cut(s)	9, 241
CciI	TCATGA	1 cut(s)	90
CfoI	GCGC	1 cut(s)	128
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	139
Cfr42I	CCGCGG	1 cut(s)	290
Csp6I	GTAC	1 cut(s)	186
CviAII	CATG	3 cut(s)	21, 31, 91
CviJI	RGCY	5 cut(s)	7, 59, 141, 239, 243
CviKI_1	RGCY	5 cut(s)	7, 59, 141, 239, 243
CviQI	GTAC	1 cut(s)	186
EaeI	YGGCCR	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	243
FaeI	CATG	3 cut(s)	24, 34, 94
FaiI	YATR	4 cut(s)	22, 32, 92, 101
FatI	CATG	3 cut(s)	20, 30, 90
Fnu4HI	GCNGC	3 cut(s)	176, 263, 290
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	3 cut(s)	176, 263, 290
FspBI	CTAG	2 cut(s)	192, 340
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	3 cut(s)	176, 263, 290
GsaI	CCCAGC	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	141, 243
HapII	CCGG	1 cut(s)	240
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	3 cut(s)	24, 34, 94
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HinfI	GANTC	3 cut(s)	44, 224, 315
HpaII	CCGG	1 cut(s)	240
Hpy166II	GTNNAC	2 cut(s)	67, 151
Hpy188III	TCNNGA	1 cut(s)	91
Hpy8I	GTNNAC	2 cut(s)	67, 151
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	2 cut(s)	148, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 262
Hsp92II	CATG	3 cut(s)	24, 34, 94
HspAI	GCGC	1 cut(s)	126
KroI	GCCGGC	1 cut(s)	239
KroNI	GCCGGC	1 cut(s)	241
KspI	CCGCGG	1 cut(s)	290
LmnI	GCTCC	2 cut(s)	4, 259
LpnPI	CCDG	6 cut(s)	185, 230, 242, 246, 253, 257
Lsp1109I	GCAGC	2 cut(s)	187, 274
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	2 cut(s)	192, 340
MaeIII	GTNAC	1 cut(s)	203
MboII	GAAGA	2 cut(s)	193, 280
MluCI	AATT	1 cut(s)	94
MlyI	GAGTC	3 cut(s)	38, 233, 309
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	1 cut(s)	166
MroNI	GCCGGC	1 cut(s)	239
MseI	TTAA	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	289
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	245
MvnI	CGCG	1 cut(s)	289
MwoI	GCNNNNNNNGC	2 cut(s)	125, 262
NaeI	GCCGGC	1 cut(s)	241
NgoMIV	GCCGGC	1 cut(s)	239
NlaIII	CATG	3 cut(s)	24, 34, 94
NlaIV	GGNNCC	1 cut(s)	276
NmeAIII	GCCGAG	1 cut(s)	154
PagI	TCATGA	1 cut(s)	90
PdiI	GCCGGC	1 cut(s)	241
PkrI	GCNGC	3 cut(s)	177, 264, 291
PleI	GAGTC	3 cut(s)	38, 232, 309
PpsI	GAGTC	3 cut(s)	38, 232, 309
Psp6I	CCWGG	1 cut(s)	243
PspFI	CCCAGC	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	139
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
SacII	CCGCGG	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	3 cut(s)	176, 263, 290
Sau96I	GGNCC	1 cut(s)	139
ScaI	AGTACT	1 cut(s)	187
SchI	GAGTC	3 cut(s)	38, 233, 309
ScrFI	CCNGG	1 cut(s)	245
SetI	ASST	2 cut(s)	9, 249
SfaNI	GCATC	1 cut(s)	106
Sfr303I	CCGCGG	1 cut(s)	290
SgrBI	CCGCGG	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	46
SmoI	CTYRAG	1 cut(s)	46
Sse9I	AATT	1 cut(s)	94
SsiI	CCGC	4 cut(s)	287, 289, 292, 299
SspMI	CTAG	2 cut(s)	192, 340
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	148, 323
TaqI	TCGA	2 cut(s)	114, 303
TasI	AATT	1 cut(s)	94
TatI	WGTACW	1 cut(s)	185
TauI	GCSGC	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	326
TseI	GCWGC	2 cut(s)	175, 262
TspDTI	ATGAA	3 cut(s)	9, 47, 107
TspRI	CASTG	1 cut(s)	326
XapI	RAATTY	1 cut(s)	94
XspI	CTAG	2 cut(s)	192, 340
ZrmI	AGTACT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.