Prupe.5G133200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0005051
Physical Location & Seq
Forward (+)
12760267 .. 12761871
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G133200.1

Sequence Viewer

Length: 297 bp
ATGAATTCCGTGTTCAGTTCGTTTGATGCTTTCTTCTACGCTGAGTTTTTGGGACAGACGGTGAAGGCTTCCTTCCCTACACAGCAGCAGCAGAAGAGTACTGGGACTGTGCTGAACAACAAGGCATCAGTTGCAGATAATTTGAATGGTGCAAAGCAAGAGGGCAACAGGGAGGCCTCCATCTCCATGCCTCAACAAGCTCAGCCTGTGAAGAAGAAGCAGAGCCAGAAGGCACCGCCACGGTTCGCGCTGGAGTTGGATGGGCTCAACTGCTTTGAGACCATCGTCTATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.83

Weight (kDa)

8.82

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 232
AccII CGCG 1 cut(s) 248
AciI CCGC 1 cut(s) 236
AcsI RAATTY 1 cut(s) 4
AfaI GTAC 1 cut(s) 100
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Alw26I GTCTC 1 cut(s) 272
AoxI GGCC 1 cut(s) 174
ApeKI GCWGC 2 cut(s) 85, 88
ApoI RAATTY 1 cut(s) 4
AspLEI GCGC 1 cut(s) 250
AsuHPI GGTGA 1 cut(s) 73
BanI GGYRCC 1 cut(s) 232
BanII GRGCYC 1 cut(s) 267
BbvI GCAGC 2 cut(s) 97, 100
BccI CCATC 3 cut(s) 188, 254, 290
BcoDI GTCTC 1 cut(s) 272
BisI GCNGC 2 cut(s) 86, 89
BlpI GCTNAGC 1 cut(s) 201
BlsI GCNGC 2 cut(s) 87, 90
BmcAI AGTACT 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 234
BmrI ACTGGG 1 cut(s) 111
BmsI GCATC 2 cut(s) 16, 134
BmuI ACTGGG 1 cut(s) 111
BoxI GACNNNNGTC 1 cut(s) 284
BpmI CTGGAG 1 cut(s) 272
Bpu1102I GCTNAGC 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 1 cut(s) 265
BseMII CTCAG 2 cut(s) 33, 215
BseNI ACTGG 1 cut(s) 106
BseXI GCAGC 2 cut(s) 97, 100
Bsh1236I CGCG 1 cut(s) 248
BshFI GGCC 1 cut(s) 176
BshNI GGYRCC 1 cut(s) 232
BslFI GGGAC 2 cut(s) 66, 118
BsmAI GTCTC 1 cut(s) 272
BsmFI GGGAC 2 cut(s) 66, 118
BsnI GGCC 1 cut(s) 176
Bso31I GGTCTC 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 267
Bsp1720I GCTNAGC 1 cut(s) 201
BspACI CCGC 1 cut(s) 236
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 2 cut(s) 34, 214
BspFNI CGCG 1 cut(s) 248
BspLI GGNNCC 1 cut(s) 234
BspT107I GGYRCC 1 cut(s) 232
BspTNI GGTCTC 1 cut(s) 272
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 239
Bst4CI ACNGT 3 cut(s) 61, 109, 243
Bst6I CTCTTC 1 cut(s) 89
BstAPI GCANNNNNTGC 1 cut(s) 131
BstDEI CTNAG 2 cut(s) 42, 201
BstDSI CCRYGG 1 cut(s) 239
BstF5I GGATG 1 cut(s) 265
BstFNI CGCG 1 cut(s) 248
BstHHI GCGC 1 cut(s) 250
BstMAI GTCTC 1 cut(s) 272
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstPAI GACNNNNGTC 1 cut(s) 284
BstUI CGCG 1 cut(s) 248
BstV1I GCAGC 2 cut(s) 97, 100
BsuRI GGCC 1 cut(s) 176
BtgI CCRYGG 1 cut(s) 239
BtsCI GGATG 1 cut(s) 265
CfoI GCGC 1 cut(s) 250
Csp6I GTAC 1 cut(s) 99
CviAII CATG 1 cut(s) 187
CviJI RGCY 6 cut(s) 68, 176, 200, 205, 225, 265
CviKI_1 RGCY 6 cut(s) 68, 176, 200, 205, 225, 265
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 2 cut(s) 42, 201
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Eco147I AGGCCT 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 267
Eco31I GGTCTC 1 cut(s) 272
EcoRI GAATTC 1 cut(s) 4
EcoT38I GRGCYC 1 cut(s) 267
FaeI CATG 1 cut(s) 190
FaiI YATR 1 cut(s) 188
FalI AAGNNNNNCTT 2 cut(s) 56, 88
FaqI GGGAC 2 cut(s) 66, 118
FatI CATG 1 cut(s) 186
Fnu4HI GCNGC 2 cut(s) 86, 89
FokI GGATG 1 cut(s) 272
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 2 cut(s) 86, 89
GlaI GCGC 1 cut(s) 249
GluI GCNGC 2 cut(s) 86, 89
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 1 cut(s) 176
HhaI GCGC 1 cut(s) 250
Hin1II CATG 1 cut(s) 190
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HphI GGTGA 1 cut(s) 73
HpyAV CCTTC 3 cut(s) 58, 82, 223
HpyCH4III ACNGT 3 cut(s) 61, 109, 243
HpyCH4V TGCA 2 cut(s) 134, 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 2 cut(s) 42, 201
Hsp92II CATG 1 cut(s) 190
HspAI GCGC 1 cut(s) 248
LpnPI CCDG 5 cut(s) 87, 154, 219, 236, 239
Lsp1109I GCAGC 2 cut(s) 97, 100
LweI GCATC 2 cut(s) 16, 134
MboII GAAGA 4 cut(s) 25, 106, 223, 226
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 2 cut(s) 4, 139
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 4 cut(s) 154, 166, 187, 201
MseI TTAA 1 cut(s) 295
MslI CAYNNNNRTG 1 cut(s) 185
MvnI CGCG 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 131
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 1 cut(s) 234
PceI AGGCCT 1 cut(s) 176
PkrI GCNGC 2 cut(s) 87, 90
PshAI GACNNNNGTC 1 cut(s) 284
PspN4I GGNNCC 1 cut(s) 234
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
RseI CAYNNNNRTG 1 cut(s) 185
SaqAI TTAA 1 cut(s) 295
SatI GCNGC 2 cut(s) 86, 89
ScaI AGTACT 1 cut(s) 100
SduI GDGCHC 1 cut(s) 267
SetI ASST 1 cut(s) 202
SfaNI GCATC 2 cut(s) 16, 134
SmiMI CAYNNNNRTG 1 cut(s) 185
Sse9I AATT 2 cut(s) 4, 139
SseBI AGGCCT 1 cut(s) 176
SsiI CCGC 1 cut(s) 236
StuI AGGCCT 1 cut(s) 176
TaaI ACNGT 3 cut(s) 61, 109, 243
TasI AATT 2 cut(s) 4, 139
TatI WGTACW 1 cut(s) 98
Tru1I TTAA 1 cut(s) 295
Tru9I TTAA 1 cut(s) 295
TseI GCWGC 2 cut(s) 85, 88
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 4
ZrmI AGTACT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.