pycom06g11350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0005051
Physical Location & Seq
Forward (+)
16668185 .. 16668442
258 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g11350.1

Sequence Viewer

Length: 258 bp
ATGAATTCCTTGTTCAGTTCGTTCGATGCCTTGTGTGCTGAGGTCTTGGGCCAGATGGTGAAGTCCACCTTCCCTGCACACCAGCTGAAGAGTACTGCCGCAGCTCCATCTAGCAACACGGTTAATACAGCAAAGCAAGAGGGAAATATGGAGTCATCGCCGGAGGCTCGTGTGAAGAAGCAGAGCCGGAGGACGCCGCCGCGGTTCGCGGTGGAGCTGGACGGGCTTAACTGCTTTGAGACACTCGTCTCTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.25

Weight (kDa)

8.77

Isoelectric Point (pI)

57.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 202, 209
AciI CCGC 5 cut(s) 99, 197, 200, 202, 209
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 194
AfaI GTAC 1 cut(s) 94
AluBI AGCT 3 cut(s) 85, 104, 217
AluI AGCT 3 cut(s) 85, 104, 217
Alw26I GTCTC 2 cut(s) 233, 253
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 101
ApoI RAATTY 1 cut(s) 4
AspS9I GGNCC 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 70
BauI CACGAG 1 cut(s) 168
BbvCI CCTCAGC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 113
BccI CCATC 2 cut(s) 49, 115
BcoDI GTCTC 2 cut(s) 233, 253
BfaI CTAG 1 cut(s) 111
BisI GCNGC 4 cut(s) 99, 102, 197, 200
BlsI GCNGC 4 cut(s) 100, 103, 198, 201
BmcAI AGTACT 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 49
BmsI GCATC 1 cut(s) 16
BoxI GACNNNNGTC 1 cut(s) 245
Bpu10I CCTNAGC 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 200
BseMII CTCAG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 113
BsgI GTGCAG 1 cut(s) 60
Bsh1236I CGCG 2 cut(s) 202, 209
BshFI GGCC 1 cut(s) 51
BsiSI CCGG 2 cut(s) 161, 187
BsmAI GTCTC 2 cut(s) 233, 253
BsmBI CGTCTC 1 cut(s) 253
BsnI GGCC 1 cut(s) 51
BspACI CCGC 5 cut(s) 99, 197, 200, 202, 209
BspANI GGCC 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 31
BspFNI CGCG 2 cut(s) 202, 209
BssECI CCNNGG 1 cut(s) 200
BssNI GRCGYC 1 cut(s) 194
BssSI CACGAG 1 cut(s) 168
Bst2BI CACGAG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 83
BstACI GRCGYC 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 39
BstDSI CCRYGG 1 cut(s) 200
BstFNI CGCG 2 cut(s) 202, 209
BstMAI GTCTC 2 cut(s) 233, 253
BstMWI GCNNNNNNNGC 2 cut(s) 35, 223
BstPAI GACNNNNGTC 1 cut(s) 245
BstUI CGCG 2 cut(s) 202, 209
BstV1I GCAGC 1 cut(s) 113
BsuRI GGCC 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 200
BtgZI GCGATG 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 49
Cfr42I CCGCGG 1 cut(s) 203
CseI GACGC 1 cut(s) 202
Csp6I GTAC 1 cut(s) 93
CviJI RGCY 7 cut(s) 51, 85, 104, 167, 186, 217, 226
CviKI_1 RGCY 7 cut(s) 51, 85, 104, 167, 186, 217, 226
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Eco57I CTGAAG 1 cut(s) 107
EcoRI GAATTC 1 cut(s) 4
Esp3I CGTCTC 1 cut(s) 253
FaiI YATR 1 cut(s) 149
FalI AAGNNNNNCTT 2 cut(s) 53, 85
Fnu4HI GCNGC 4 cut(s) 99, 102, 197, 200
Fsp4HI GCNGC 4 cut(s) 99, 102, 197, 200
FspBI CTAG 1 cut(s) 111
GluI GCNGC 4 cut(s) 99, 102, 197, 200
HaeIII GGCC 1 cut(s) 51
HapII CCGG 2 cut(s) 161, 187
HgaI GACGC 1 cut(s) 202
Hin1I GRCGYC 1 cut(s) 194
HinfI GANTC 1 cut(s) 152
HpaII CCGG 2 cut(s) 161, 187
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 66
Hpy8I GTNNAC 1 cut(s) 66
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 223
HpyF3I CTNAG 1 cut(s) 39
Hsp92I GRCGYC 1 cut(s) 194
KspI CCGCGG 1 cut(s) 203
LmnI GCTCC 2 cut(s) 109, 214
LpnPI CCDG 6 cut(s) 65, 87, 95, 174, 200, 203
Lsp1109I GCAGC 1 cut(s) 113
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 111
MboII GAAGA 2 cut(s) 100, 187
MluCI AATT 1 cut(s) 4
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 4 cut(s) 34, 133, 157, 183
MseI TTAA 3 cut(s) 123, 228, 256
MspA1I CMGCKG 2 cut(s) 85, 202
MspI CCGG 2 cut(s) 161, 187
MvnI CGCG 2 cut(s) 202, 209
MwoI GCNNNNNNNGC 2 cut(s) 35, 223
PkrI GCNGC 4 cut(s) 100, 103, 198, 201
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
PshAI GACNNNNGTC 1 cut(s) 245
PspPI GGNCC 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 85
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
SacII CCGCGG 1 cut(s) 203
SaqAI TTAA 3 cut(s) 123, 228, 256
SatI GCNGC 4 cut(s) 99, 102, 197, 200
Sau96I GGNCC 1 cut(s) 49
ScaI AGTACT 1 cut(s) 94
SchI GAGTC 1 cut(s) 161
SetI ASST 5 cut(s) 45, 71, 87, 106, 219
SfaNI GCATC 1 cut(s) 16
Sfr303I CCGCGG 1 cut(s) 203
SgrBI CCGCGG 1 cut(s) 203
Sse9I AATT 1 cut(s) 4
SsiI CCGC 5 cut(s) 99, 197, 200, 202, 209
SspMI CTAG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 121
TaqI TCGA 1 cut(s) 24
TasI AATT 1 cut(s) 4
TatI WGTACW 1 cut(s) 92
TauI GCSGC 3 cut(s) 101, 199, 202
Tru1I TTAA 3 cut(s) 123, 228, 256
Tru9I TTAA 3 cut(s) 123, 228, 256
TseI GCWGC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 4
XspI CTAG 1 cut(s) 111
ZrmI AGTACT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.