Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00083

Orthogroup ID

OG0005051

Physical Location & Seq

Genomic Coordinates Forward (+)

2829 .. 3570

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G002620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGAATTCCATGTTCAGTTCTTTCGATGCTTTGTGTGCCGAGTTCTTGGGCCAAACTGTCAAGGCCTCCTTCCCTGTTTCCCAGCAGCAGAAGAGTACTACTAGCGTGTTGAGTAACTTGAATAAGAAGCAAGAGTCTTTGCCAGAAGCCGGCCAGGTTAAGAAGCAGGAGCAGCAGAAGACGGCACCACCACCACCGCGGCGGTTTGCGGTCGAGTTGGATGGACTCCACTGTTTTGAAACCCTCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

83

Amino Acids

9.19

Weight (kDa)

7.79

Isoelectric Point (pI)

63.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32920 AT1G32928
fragaria_vesca	FvH4_5g10560 FvH4_7g32852
prunus_persica	Prupe.5G133000_v2.0.a1 Prupe.5G133100_v2.0.a1 Prupe.5G133200_v2.0.a1
pyrus_communis	pycom06g11340 pycom06g11350 pycom14g11400
rosa_chinensis	RchiOBHm_Chr1g0382811 RchiOBHm_Chr7g0187591
rosa_laevigata	RLG00000004768 RLG00000004769 RLG00000026157
rosa_multiflora	Rmu_sc0002242.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267270 Rroxscaffold_4G00277880
rosa_rugosa	Rorug01G0436400 Rorug06G0482800
rosa_samantha	Rh1AG461400 Rh1CG431900 Rh5AG237600 Rh5DG246100 Rh7AG087800 Rh7BG089000 Rh7BG089100 Rh7CG088200 Rh7CG088400
rosa_wichuraiana	Rw0G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	184
AccII	CGCG	1 cut(s)	199
AciI	CCGC	4 cut(s)	197, 199, 202, 209
AcoI	YGGCCR	1 cut(s)	151
AcsI	RAATTY	1 cut(s)	4
AfaI	GTAC	1 cut(s)	97
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgsI	TTSAA	2 cut(s)	121, 239
AjnI	CCWGG	1 cut(s)	153
AoxI	GGCC	3 cut(s)	49, 63, 151
ApeKI	GCWGC	2 cut(s)	85, 172
ApoI	RAATTY	1 cut(s)	4
AspS9I	GGNCC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	185
BbvI	GCAGC	2 cut(s)	97, 184
BccI	CCATC	1 cut(s)	215
BceAI	ACGGC	1 cut(s)	198
BciT130I	CCWGG	1 cut(s)	155
BfaI	CTAG	2 cut(s)	102, 250
BisI	GCNGC	3 cut(s)	86, 173, 200
BlsI	GCNGC	3 cut(s)	87, 174, 201
BmcAI	AGTACT	1 cut(s)	97
Bme1390I	CCNGG	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	1 cut(s)	16
BpiI	GAAGAC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse118I	RCCGGY	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	197
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseXI	GCAGC	2 cut(s)	97, 184
BseYI	CCCAGC	1 cut(s)	81
Bsh1236I	CGCG	1 cut(s)	199
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	3 cut(s)	51, 65, 153
BshNI	GGYRCC	1 cut(s)	184
BsiEI	CGRYCG	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	149
BsnI	GGCC	3 cut(s)	51, 65, 153
BspACI	CCGC	4 cut(s)	197, 199, 202, 209
BspANI	GGCC	3 cut(s)	51, 65, 153
BspFNI	CGCG	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	186
BspT107I	GGYRCC	1 cut(s)	184
BsrFI	RCCGGY	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	2 cut(s)	58, 233
Bst6I	CTCTTC	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	151
BstDSI	CCRYGG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	226
BstFNI	CGCG	1 cut(s)	199
BstMCI	CGRYCG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 172
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	153
BstUI	CGCG	1 cut(s)	199
BstV1I	GCAGC	2 cut(s)	97, 184
BstV2I	GAAGAC	1 cut(s)	185
BsuRI	GGCC	3 cut(s)	51, 65, 153
BtgI	CCRYGG	1 cut(s)	197
BtsCI	GGATG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	49
Cfr42I	CCGCGG	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	4 cut(s)	51, 65, 149, 153
CviKI_1	RGCY	4 cut(s)	51, 65, 149, 153
CviQI	GTAC	1 cut(s)	96
EaeI	YGGCCR	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco147I	AGGCCT	1 cut(s)	65
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	153
FaeI	CATG	1 cut(s)	13
FaiI	YATR	1 cut(s)	11
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FatI	CATG	1 cut(s)	9
Fnu4HI	GCNGC	3 cut(s)	86, 173, 200
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	3 cut(s)	86, 173, 200
FspBI	CTAG	2 cut(s)	102, 250
GluI	GCNGC	3 cut(s)	86, 173, 200
GsaI	CCCAGC	1 cut(s)	85
HaeIII	GGCC	3 cut(s)	51, 65, 153
HapII	CCGG	1 cut(s)	150
Hin1II	CATG	1 cut(s)	13
HinfI	GANTC	2 cut(s)	134, 225
HpaII	CCGG	1 cut(s)	150
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	2 cut(s)	58, 233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 172
Hsp92II	CATG	1 cut(s)	13
KroI	GCCGGC	1 cut(s)	149
KroNI	GCCGGC	1 cut(s)	151
KspI	CCGCGG	1 cut(s)	200
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	7 cut(s)	87, 95, 140, 152, 156, 163, 167
Lsp1109I	GCAGC	2 cut(s)	97, 184
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	2 cut(s)	102, 250
MaeIII	GTNAC	1 cut(s)	113
MboII	GAAGA	2 cut(s)	103, 190
MluCI	AATT	1 cut(s)	4
MlyI	GAGTC	2 cut(s)	143, 219
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	1 cut(s)	76
MroNI	GCCGGC	1 cut(s)	149
MseI	TTAA	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	155
MvnI	CGCG	1 cut(s)	199
MwoI	GCNNNNNNNGC	2 cut(s)	35, 172
NaeI	GCCGGC	1 cut(s)	151
NgoMIV	GCCGGC	1 cut(s)	149
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	1 cut(s)	186
NmeAIII	GCCGAG	1 cut(s)	64
PceI	AGGCCT	1 cut(s)	65
PdiI	GCCGGC	1 cut(s)	151
PkrI	GCNGC	3 cut(s)	87, 174, 201
PleI	GAGTC	2 cut(s)	142, 219
PpsI	GAGTC	2 cut(s)	142, 219
Psp6I	CCWGG	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	49
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
SacII	CCGCGG	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	3 cut(s)	86, 173, 200
Sau96I	GGNCC	1 cut(s)	49
ScaI	AGTACT	1 cut(s)	97
SchI	GAGTC	2 cut(s)	143, 219
ScrFI	CCNGG	1 cut(s)	155
SetI	ASST	1 cut(s)	159
SfaNI	GCATC	1 cut(s)	16
Sfr303I	CCGCGG	1 cut(s)	200
SgrBI	CCGCGG	1 cut(s)	200
Sse9I	AATT	1 cut(s)	4
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	4 cut(s)	197, 199, 202, 209
SspMI	CTAG	2 cut(s)	102, 250
StuI	AGGCCT	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	58, 233
TaqI	TCGA	2 cut(s)	24, 213
TasI	AATT	1 cut(s)	4
TatI	WGTACW	1 cut(s)	95
TauI	GCSGC	1 cut(s)	202
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	236
TseI	GCWGC	2 cut(s)	85, 172
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	236
XapI	RAATTY	1 cut(s)	4
XspI	CTAG	2 cut(s)	102, 250
ZrmI	AGTACT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.