Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005051

Physical Location & Seq

Genomic Coordinates Forward (+)

67835548 .. 67836127

Gene Structure 580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG461400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAGAAAAATATCTGAAGCTCGTAGAATAAGAAGCCTTACAATTTCTCCGACGGGTGAAACAGACCAAACTTCCGATCAAGTGTTATATAGAGACCAAACTTTTCTCAAGTACCTAATACAATCTCTCCGATGGCTCAAGTCATCAAACTCAGAAGCAAAGAGCCTATTATTCCTATTATCAGAAACAATGTTCTCCTCGGATACAATCCACAAGCCAATGAGCTTCATAGAAAACGACGAGGAGAAACAGAAGGTGGCCGGTGAAATTGCTTCTTCATCATCGGCGGTGGCGGCCAATAGTGAACATGGAGAGAAGCAGCAGCAGCAGCTAGAGAGCAAGAGTATGATGCCATTGCCAAGGTTTGCGCCGGAGATCGATGGGGTTCACTGTTTCGAAACCATTGTTCTTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.65

Weight (kDa)

5.8

Isoelectric Point (pI)

62.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32920 AT1G32928
fragaria_vesca	FvH4_5g10560 FvH4_7g32852
prunus_persica	Prupe.5G133000_v2.0.a1 Prupe.5G133100_v2.0.a1 Prupe.5G133200_v2.0.a1
pyrus_communis	pycom06g11340 pycom06g11350 pycom14g11400
rosa_chinensis	RchiOBHm_Chr1g0382811 RchiOBHm_Chr7g0187591
rosa_laevigata	RLG00000004768 RLG00000004769 RLG00000026157
rosa_multiflora	Rmu_sc0002242.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267270 Rroxscaffold_4G00277880
rosa_rugosa	Rorug01G0436400 Rorug06G0482800
rosa_samantha	Rh1AG461400 Rh1CG431900 Rh5AG237600 Rh5DG246100 Rh7AG087800 Rh7BG089000 Rh7BG089100 Rh7CG088200 Rh7CG088400
rosa_wichuraiana	Rw0G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	287, 293
AcoI	YGGCCR	2 cut(s)	258, 294
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	1 cut(s)	113
AluBI	AGCT	3 cut(s)	20, 225, 331
AluI	AGCT	3 cut(s)	20, 225, 331
Alw26I	GTCTC	1 cut(s)	87
AoxI	GGCC	2 cut(s)	258, 294
ApeKI	GCWGC	4 cut(s)	319, 322, 325, 328
AspLEI	GCGC	1 cut(s)	370
AsuHPI	GGTGA	2 cut(s)	68, 275
AsuII	TTCGAA	1 cut(s)	396
BbvI	GCAGC	4 cut(s)	331, 334, 337, 340
BccI	CCATC	2 cut(s)	126, 374
BciVI	GTATCC	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	87
BfaI	CTAG	1 cut(s)	332
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	5 cut(s)	294, 320, 323, 326, 329
BlsI	GCNGC	5 cut(s)	295, 321, 324, 327, 330
BmsI	GCATC	1 cut(s)	339
Bpu14I	TTCGAA	1 cut(s)	396
BpuEI	CTTGAG	2 cut(s)	92, 122
Bsa29I	ATCGAT	1 cut(s)	378
BsaI	GGTCTC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	198, 359
BsaXI	ACNNNNNCTCC	4 cut(s)	31, 61, 111, 141
Bse118I	RCCGGY	1 cut(s)	260
Bse3DI	GCAATG	1 cut(s)	353
BseCI	ATCGAT	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	198, 359
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	1 cut(s)	165
BseRI	GAGGAG	2 cut(s)	187, 257
BseXI	GCAGC	4 cut(s)	331, 334, 337, 340
BshFI	GGCC	2 cut(s)	260, 296
BshVI	ATCGAT	1 cut(s)	378
BsiSI	CCGG	2 cut(s)	261, 371
BsmAI	GTCTC	1 cut(s)	87
BsnI	GGCC	2 cut(s)	260, 296
Bso31I	GGTCTC	1 cut(s)	87
Bsp119I	TTCGAA	1 cut(s)	396
Bsp143I	GATC	2 cut(s)	76, 375
BspACI	CCGC	2 cut(s)	287, 293
BspANI	GGCC	2 cut(s)	260, 296
BspCNI	CTCAG	1 cut(s)	164
BspDI	ATCGAT	1 cut(s)	378
BspT104I	TTCGAA	1 cut(s)	396
BspTNI	GGTCTC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	260
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	2 cut(s)	198, 359
BssMI	GATC	2 cut(s)	76, 375
BssT1I	CCWWGG	1 cut(s)	359
Bst4CI	ACNGT	1 cut(s)	392
BstBI	TTCGAA	1 cut(s)	396
BstDEI	CTNAG	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	2 cut(s)	79, 378
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	2 cut(s)	76, 375
BstMWI	GCNNNNNNNGC	3 cut(s)	293, 325, 328
BstV1I	GCAGC	4 cut(s)	331, 334, 337, 340
Bsu15I	ATCGAT	1 cut(s)	378
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	2 cut(s)	260, 296
BsuTUI	ATCGAT	1 cut(s)	378
BtsIMutI	CAGTG	2 cut(s)	388, 412
CfoI	GCGC	1 cut(s)	370
Cfr10I	RCCGGY	1 cut(s)	260
ClaI	ATCGAT	1 cut(s)	378
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	1 cut(s)	308
CviJI	RGCY	9 cut(s)	20, 36, 136, 165, 217, 225, 260, 296, 331
CviKI_1	RGCY	9 cut(s)	20, 36, 136, 165, 217, 225, 260, 296, 331
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	1 cut(s)	151
DpnI	GATC	2 cut(s)	78, 377
DpnII	GATC	2 cut(s)	76, 375
EaeI	YGGCCR	2 cut(s)	258, 294
Eco130I	CCWWGG	1 cut(s)	359
Eco31I	GGTCTC	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	359
ErhI	CCWWGG	1 cut(s)	359
FaeI	CATG	1 cut(s)	311
FaiI	YATR	5 cut(s)	88, 90, 230, 309, 347
FatI	CATG	1 cut(s)	307
Fnu4HI	GCNGC	5 cut(s)	294, 320, 323, 326, 329
Fsp4HI	GCNGC	5 cut(s)	294, 320, 323, 326, 329
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	5 cut(s)	294, 320, 323, 326, 329
HaeIII	GGCC	2 cut(s)	260, 296
HapII	CCGG	2 cut(s)	261, 371
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	1 cut(s)	311
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HpaII	CCGG	2 cut(s)	261, 371
HphI	GGTGA	2 cut(s)	68, 275
Hpy166II	GTNNAC	2 cut(s)	305, 388
Hpy188I	TCNGA	7 cut(s)	16, 51, 76, 131, 154, 184, 202
Hpy8I	GTNNAC	2 cut(s)	305, 388
Hpy99I	CGWCG	2 cut(s)	55, 242
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	1 cut(s)	392
HpyF10VI	GCNNNNNNNGC	3 cut(s)	293, 325, 328
HpyF3I	CTNAG	1 cut(s)	151
Hsp92II	CATG	1 cut(s)	311
HspAI	GCGC	1 cut(s)	368
Kzo9I	GATC	2 cut(s)	76, 375
LpnPI	CCDG	2 cut(s)	274, 384
Lsp1109I	GCAGC	4 cut(s)	331, 334, 337, 340
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	1 cut(s)	332
MalI	GATC	2 cut(s)	78, 377
MboI	GATC	2 cut(s)	76, 375
MboII	GAAGA	2 cut(s)	267, 401
MluCI	AATT	2 cut(s)	42, 267
MmeI	TCCRAC	1 cut(s)	74
MnlI	CCTC	2 cut(s)	208, 235
MspI	CCGG	2 cut(s)	261, 371
MwoI	GCNNNNNNNGC	3 cut(s)	293, 325, 328
NdeII	GATC	2 cut(s)	76, 375
NlaIII	CATG	1 cut(s)	311
NspV	TTCGAA	1 cut(s)	396
PkrI	GCNGC	5 cut(s)	295, 321, 324, 327, 330
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SatI	GCNGC	5 cut(s)	294, 320, 323, 326, 329
Sau3AI	GATC	2 cut(s)	76, 375
SetI	ASST	6 cut(s)	22, 117, 227, 258, 333, 365
SfaNI	GCATC	1 cut(s)	339
SfuI	TTCGAA	1 cut(s)	396
SmlI	CTYRAG	2 cut(s)	107, 137
SmoI	CTYRAG	2 cut(s)	107, 137
Sse9I	AATT	2 cut(s)	42, 267
SsiI	CCGC	2 cut(s)	287, 293
SspMI	CTAG	1 cut(s)	332
StyI	CCWWGG	1 cut(s)	359
TaaI	ACNGT	1 cut(s)	392
TaqI	TCGA	2 cut(s)	378, 396
TasI	AATT	2 cut(s)	42, 267
TauI	GCSGC	1 cut(s)	296
TscAI	CASTG	1 cut(s)	395
TseI	GCWGC	4 cut(s)	319, 322, 325, 328
TspDTI	ATGAA	2 cut(s)	217, 267
TspRI	CASTG	1 cut(s)	395
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.