Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003393

Physical Location & Seq

Genomic Coordinates Forward (+)

7362844 .. 7366265

Gene Structure 3422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g13050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGAATATGGAAGGCACGCCTAGTTCCCATGGATATTACATGCCTGCAGAGTGGGAACACCACTCACAGTGCTGGATTGGATGGCCTGAGCGCCCTGATAACTGGAGAAACAATGCAGTGCCTGGTCAGGCTGTGTTTGCCAGGGTGGCATCTACAATCTCAAAGTTTGAGCCTGTAACTGTGTGTGCCAGTGCTGCTCAGTGGGAAAATGCACGAAGTCAGCTACCAGAAAATGTCAGGGTTATCGAGATGAGTTTGAATGATTCTTGGTTTCGTGATACAGGCCCGACGTTCGTCATAGGAAGAAGCCCAGAGCCAAAGATTGCTGGCATTGATTGGACTTTTAACAGTTGGGGAGGAGTTGATGATGGTTGTTATCCAGACTGGAGTCTTGACCTCCTTGTGGCACGGAAGATCCTGGCAATTGAAAAGGTTCCAAGGTTTCCACATTCCATGATTCTTGAAGGTGGAAGTATCCATGTAGATGGAGAAGGGACTTGCCTCACTACTGAAGAGTGCCTCCTAAATAAAAACCGGAACCCTCATATGACCAAGGAGCAAATAGAGGATCAACTGAAGGCATATCTTGGAGCGACGAAAATTATTTGGTTGCCTCGTGGATTATATGGGGATGATGATACTAATGGTCACATCGACAATATGTGTTGTTTTGTGAGGCCTGGTGTGGTTTTGTTGTCTTGGACAGATGATGCAACAGATCCTCAGTATGAACGAGCTGTAGAAGCCCTTTCCGTCCTCTGCAATACTACTGATGCCAAAGGTAGGAAGTTGGAAGTCATTAAGCTTCATGTACCAGGCCCACTATACATGACAGAGGAAGAGGCTGCTGGAGTTTCTCAGGACGATGCTAAACTGAGACTTGCAGGCACAAGACTTGCTGCTTCTTATGTGAATTTTTACATTGCCAATGGAGCAATCATTGCTCCACAATTTGGGGACCAGAAATGGGATGATGAGGCTGTTCGTGTCCTATCTAAAGCCTTTCCACACTATGAAGTGGTGCAAATTGAAGGTGCTAGGGAGATTGTTCTGGCGGGTGGAAACATACATTGCATCACTCAGCAACAACCACACATTCCTTCACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016787 GO:0016810 GO:0016813 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0047632 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

PAD_porph

Protein Analysis

370

Amino Acids

41.13

Weight (kDa)

5.06

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAD_porph	PF04371	14 - 364	4.9e-128	Porphyromonas-type peptidyl-arginine deiminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08170 AT5G08170 AT5G08170 AT5G08170
fragaria_vesca	FvH4_5g13050 FvH4_5g13050
malus_domestica	MD06G1207500.v1.1 MD14G1218000.v1.1
prunus_persica	Prupe.5G211900_v2.0.a1 Prupe.5G211900_v2.0.a1
pyrus_communis	pycom06g18540 pycom14g18080
rosa_chinensis	RchiOBHm_Chr2g0129061 RchiOBHm_Chr4g0407271 RchiOBHm_Chr7g0184081
rosa_laevigata	RLG00000005002 RLG00000008136 RLG00000011017
rosa_multiflora	Rmu_sc0001017.1_g000016 Rmu_sc0001533.1_g000013 Rmu_sc0005026.1_g000004 Rmu_sc0018187.1_g000001 Rmu_sc0025350.1_g000012
rosa_roxburghii	Rroxscaffold_3G00223390 Rroxscaffold_3G00269900 Rroxscaffold_6G00397710
rosa_rugosa	Rorug06G0462700 Rorug06G0462700
rosa_samantha	Rh1CG056900 Rh2CG313200 Rh4BG338400 Rh7AG083000 Rh7BG064000 Rh7CG064700 Rh7DG064200
rosa_wichuraiana	Rw7G005260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	953
AciI	CCGC	1 cut(s)	1055
AclWI	GGATC	3 cut(s)	409, 576, 713
AcsI	RAATTY	1 cut(s)	913
AcuI	CTGAAG	2 cut(s)	531, 596
AfaI	GTAC	1 cut(s)	813
AfiI	CCNNNNNNNGG	4 cut(s)	403, 783, 953, 967
AgsI	TTSAA	4 cut(s)	259, 428, 464, 1031
AjnI	CCWGG	5 cut(s)	121, 140, 417, 679, 814
AluBI	AGCT	3 cut(s)	223, 737, 805
AluI	AGCT	3 cut(s)	223, 737, 805
Alw26I	GTCTC	1 cut(s)	871
AlwI	GGATC	3 cut(s)	409, 576, 713
AlwNI	CAGNNNCTG	1 cut(s)	122
AoxI	GGCC	4 cut(s)	83, 283, 677, 817
ApeKI	GCWGC	3 cut(s)	194, 845, 899
ApoI	RAATTY	1 cut(s)	913
Asp700I	GAANNNNTTC	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	3 cut(s)	284, 818, 958
AvaII	GGWCC	1 cut(s)	958
BauI	CACGAG	1 cut(s)	615
BbvI	GCAGC	3 cut(s)	181, 832, 886
BccI	CCATC	3 cut(s)	75, 362, 479
BciT130I	CCWGG	5 cut(s)	123, 142, 419, 681, 816
BciVI	GTATCC	1 cut(s)	485
BcoDI	GTCTC	1 cut(s)	871
BfaI	CTAG	2 cut(s)	21, 1038
BfmI	CTRYAG	2 cut(s)	45, 738
BfoI	RGCGCY	1 cut(s)	94
BfuI	GTATCC	1 cut(s)	485
BglI	GCCNNNNNGGC	1 cut(s)	146
BisI	GCNGC	3 cut(s)	195, 846, 900
BlsI	GCNGC	3 cut(s)	196, 847, 901
Bme1390I	CCNGG	5 cut(s)	123, 142, 419, 681, 816
Bme18I	GGWCC	1 cut(s)	958
BmgT120I	GGNCC	3 cut(s)	284, 818, 958
BmiI	GGNNCC	3 cut(s)	435, 539, 959
BmrFI	CCNGG	5 cut(s)	123, 142, 419, 681, 816
BmsI	GCATC	5 cut(s)	158, 700, 763, 856, 1083
BoxI	GACNNNNGTC	2 cut(s)	293, 387
BpmI	CTGGAG	3 cut(s)	124, 406, 870
Bpu10I	CCTNAGC	1 cut(s)	87
BsaJI	CCNNGG	4 cut(s)	28, 141, 437, 552
BsaWI	WCCGGW	1 cut(s)	534
Bsc4I	CCNNNNNNNGG	4 cut(s)	403, 783, 953, 967
Bse1I	ACTGG	3 cut(s)	107, 189, 389
Bse3DI	GCAATG	3 cut(s)	921, 939, 1069
BseBI	CCWGG	5 cut(s)	123, 142, 419, 681, 816
BseDI	CCNNGG	4 cut(s)	28, 141, 437, 552
BseGI	GGATG	3 cut(s)	86, 637, 976
BseLI	CCNNNNNNNGG	4 cut(s)	403, 783, 953, 967
BseMI	GCAATG	3 cut(s)	921, 939, 1069
BseMII	CTCAG	6 cut(s)	78, 212, 737, 866, 872, 1094
BseNI	ACTGG	3 cut(s)	107, 189, 389
BseRI	GAGGAG	1 cut(s)	372
BseXI	GCAGC	3 cut(s)	181, 832, 886
BshFI	GGCC	4 cut(s)	85, 285, 679, 819
BsiSI	CCGG	1 cut(s)	535
BslFI	GGGAC	2 cut(s)	508, 971
BslI	CCNNNNNNNGG	4 cut(s)	403, 783, 953, 967
BsmAI	GTCTC	1 cut(s)	871
BsmFI	GGGAC	2 cut(s)	508, 971
BsnI	GGCC	4 cut(s)	85, 285, 679, 819
Bsp143I	GATC	3 cut(s)	414, 568, 718
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	1 cut(s)	1055
BspANI	GGCC	4 cut(s)	85, 285, 679, 819
BspCNI	CTCAG	6 cut(s)	79, 211, 736, 867, 871, 1093
BspLI	GGNNCC	3 cut(s)	435, 539, 959
BspMAI	CTGCAG	1 cut(s)	49
BspPI	GGATC	3 cut(s)	409, 576, 713
BsrDI	GCAATG	3 cut(s)	921, 939, 1069
BsrI	ACTGG	3 cut(s)	107, 189, 389
BssECI	CCNNGG	4 cut(s)	28, 141, 437, 552
BssMI	GATC	3 cut(s)	414, 568, 718
BssSI	CACGAG	1 cut(s)	615
BssT1I	CCWWGG	3 cut(s)	28, 437, 552
Bst2BI	CACGAG	1 cut(s)	615
Bst2UI	CCWGG	5 cut(s)	123, 142, 419, 681, 816
Bst4CI	ACNGT	4 cut(s)	69, 181, 350, 1107
Bst6I	CTCTTC	2 cut(s)	507, 834
BstAPI	GCANNNNNTGC	1 cut(s)	941
BstC8I	GCNNGC	4 cut(s)	17, 45, 328, 886
BstDEI	CTNAG	6 cut(s)	87, 198, 723, 858, 875, 1080
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	3 cut(s)	86, 637, 976
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	3 cut(s)	417, 571, 721
BstMAI	GTCTC	1 cut(s)	871
BstMBI	GATC	3 cut(s)	414, 568, 718
BstMWI	GCNNNNNNNGC	6 cut(s)	137, 146, 194, 743, 932, 941
BstNI	CCWGG	5 cut(s)	123, 142, 419, 681, 816
BstNSI	RCATGY	1 cut(s)	43
BstPAI	GACNNNNGTC	2 cut(s)	293, 387
BstSCI	CCNGG	5 cut(s)	121, 140, 417, 679, 814
BstSFI	CTRYAG	2 cut(s)	45, 738
BstV1I	GCAGC	3 cut(s)	181, 832, 886
BstX2I	RGATCY	2 cut(s)	414, 718
BstXI	CCANNNNNNTGG	1 cut(s)	485
BstYI	RGATCY	2 cut(s)	414, 718
BsuI	GTATCC	1 cut(s)	485
BsuRI	GGCC	4 cut(s)	85, 285, 679, 819
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	3 cut(s)	86, 637, 976
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	4 cut(s)	74, 123, 196, 206
Cac8I	GCNNGC	4 cut(s)	17, 45, 328, 886
CaiI	CAGNNNCTG	1 cut(s)	122
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	3 cut(s)	284, 818, 958
Csp6I	GTAC	1 cut(s)	812
CviAII	CATG	6 cut(s)	29, 40, 454, 479, 809, 829
CviQI	GTAC	1 cut(s)	812
DdeI	CTNAG	6 cut(s)	87, 198, 723, 858, 875, 1080
DpnI	GATC	3 cut(s)	416, 570, 720
DpnII	GATC	3 cut(s)	414, 568, 718
Eam1104I	CTCTTC	2 cut(s)	507, 834
EarI	CTCTTC	2 cut(s)	507, 834
Eco130I	CCWWGG	3 cut(s)	28, 437, 552
Eco147I	AGGCCT	1 cut(s)	679
Eco47I	GGWCC	1 cut(s)	958
Eco57I	CTGAAG	2 cut(s)	531, 596
EcoRII	CCWGG	5 cut(s)	121, 140, 417, 679, 814
EcoT14I	CCWWGG	3 cut(s)	28, 437, 552
ErhI	CCWWGG	3 cut(s)	28, 437, 552
FaeI	CATG	6 cut(s)	32, 43, 457, 482, 812, 832
FaqI	GGGAC	2 cut(s)	508, 971
FatI	CATG	6 cut(s)	28, 39, 453, 478, 808, 828
FauI	CCCGC	1 cut(s)	1048
FauNDI	CATATG	1 cut(s)	546
Fnu4HI	GCNGC	3 cut(s)	195, 846, 900
FokI	GGATG	3 cut(s)	93, 644, 983
Fsp4HI	GCNGC	3 cut(s)	195, 846, 900
FspBI	CTAG	2 cut(s)	21, 1038
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	3 cut(s)	195, 846, 900
GsuI	CTGGAG	3 cut(s)	124, 406, 870
HaeII	RGCGCY	1 cut(s)	94
HaeIII	GGCC	4 cut(s)	85, 285, 679, 819
HapII	CCGG	1 cut(s)	535
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	6 cut(s)	32, 43, 457, 482, 812, 832
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HindIII	AAGCTT	1 cut(s)	803
HinfI	GANTC	3 cut(s)	263, 388, 457
HpaII	CCGG	1 cut(s)	535
Hpy188III	TCNNGA	6 cut(s)	247, 275, 380, 392, 461, 860
Hpy99I	CGWCG	2 cut(s)	292, 598
HpyAV	CCTTC	6 cut(s)	5, 458, 485, 571, 1025, 1110
HpyCH4III	ACNGT	4 cut(s)	69, 181, 350, 1107
HpyCH4IV	ACGT	1 cut(s)	290
HpyCH4V	TGCA	8 cut(s)	47, 116, 212, 713, 762, 884, 1024, 1074
HpyF10VI	GCNNNNNNNGC	6 cut(s)	137, 146, 194, 743, 932, 941
HpyF3I	CTNAG	6 cut(s)	87, 198, 723, 858, 875, 1080
HpySE526I	ACGT	1 cut(s)	290
Hsp92II	CATG	6 cut(s)	32, 43, 457, 482, 812, 832
HspAI	GCGC	1 cut(s)	91
Kzo9I	GATC	3 cut(s)	414, 568, 718
LmnI	GCTCC	4 cut(s)	556, 590, 932, 949
Lsp1109I	GCAGC	3 cut(s)	181, 832, 886
LweI	GCATC	5 cut(s)	158, 700, 763, 856, 1083
MaeI	CTAG	2 cut(s)	21, 1038
MaeII	ACGT	1 cut(s)	290
MaeIII	GTNAC	2 cut(s)	175, 647
MalI	GATC	3 cut(s)	416, 570, 720
MboI	GATC	3 cut(s)	414, 568, 718
MboII	GAAGA	4 cut(s)	315, 424, 524, 851
MfeI	CAATTG	1 cut(s)	423
MflI	RGATCY	2 cut(s)	414, 718
MluCI	AATT	5 cut(s)	423, 600, 913, 950, 1026
MlyI	GAGTC	1 cut(s)	397
MmeI	TCCRAC	1 cut(s)	771
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	2 cut(s)	345, 801
MslI	CAYNNNNRTG	1 cut(s)	483
MspI	CCGG	1 cut(s)	535
MspR9I	CCNGG	5 cut(s)	123, 142, 419, 681, 816
MunI	CAATTG	1 cut(s)	423
MvaI	CCWGG	5 cut(s)	123, 142, 419, 681, 816
MwoI	GCNNNNNNNGC	6 cut(s)	137, 146, 194, 743, 932, 941
NcoI	CCATGG	1 cut(s)	28
NdeI	CATATG	1 cut(s)	546
NdeII	GATC	3 cut(s)	414, 568, 718
NlaIII	CATG	6 cut(s)	32, 43, 457, 482, 812, 832
NlaIV	GGNNCC	3 cut(s)	435, 539, 959
NmuCI	GTSAC	1 cut(s)	647
NspI	RCATGY	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	679
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	263, 457
PflMI	CCANNNNNTGG	1 cut(s)	953
PkrI	GCNGC	3 cut(s)	196, 847, 901
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
PshAI	GACNNNNGTC	2 cut(s)	293, 387
Psp6I	CCWGG	5 cut(s)	121, 140, 417, 679, 814
PspGI	CCWGG	5 cut(s)	121, 140, 417, 679, 814
PspN4I	GGNNCC	3 cut(s)	435, 539, 959
PspPI	GGNCC	3 cut(s)	284, 818, 958
PstI	CTGCAG	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	2 cut(s)	414, 718
RsaI	GTAC	1 cut(s)	813
RsaNI	GTAC	1 cut(s)	812
RseI	CAYNNNNRTG	1 cut(s)	483
SaqAI	TTAA	2 cut(s)	345, 801
SatI	GCNGC	3 cut(s)	195, 846, 900
Sau3AI	GATC	3 cut(s)	414, 568, 718
Sau96I	GGNCC	3 cut(s)	284, 818, 958
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	5 cut(s)	123, 142, 419, 681, 816
SfaNI	GCATC	5 cut(s)	158, 700, 763, 856, 1083
SfcI	CTRYAG	2 cut(s)	45, 738
SinI	GGWCC	1 cut(s)	958
SmiMI	CAYNNNNRTG	1 cut(s)	483
Sse9I	AATT	5 cut(s)	423, 600, 913, 950, 1026
SseBI	AGGCCT	1 cut(s)	679
SsiI	CCGC	1 cut(s)	1055
SspMI	CTAG	2 cut(s)	21, 1038
StuI	AGGCCT	1 cut(s)	679
StyD4I	CCNGG	5 cut(s)	121, 140, 417, 679, 814
StyI	CCWWGG	3 cut(s)	28, 437, 552
TaaI	ACNGT	4 cut(s)	69, 181, 350, 1107
TaiI	ACGT	1 cut(s)	293
TaqI	TCGA	2 cut(s)	246, 654
TasI	AATT	5 cut(s)	423, 600, 913, 950, 1026
TfiI	GAWTC	2 cut(s)	263, 457
Tru1I	TTAA	2 cut(s)	345, 801
Tru9I	TTAA	2 cut(s)	345, 801
TscAI	CASTG	4 cut(s)	74, 123, 196, 206
TseFI	GTSAC	1 cut(s)	647
TseI	GCWGC	3 cut(s)	194, 845, 899
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	4 cut(s)	17, 744, 797, 1029
TspGWI	ACGGA	2 cut(s)	424, 742
TspRI	CASTG	4 cut(s)	74, 123, 196, 206
Van91I	CCANNNNNTGG	1 cut(s)	953
VpaK11BI	GGWCC	1 cut(s)	958
XapI	RAATTY	1 cut(s)	913
XceI	RCATGY	1 cut(s)	43
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	2 cut(s)	21, 1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.